Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:35:18 (6121): wrapper (7.7.26015): starting
02:35:18 (6121): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:35:18] Arguments: --nthreads 8
[2025-11-25 02:35:18] Threads: 8
[2025-11-25 02:35:18] Checking for CVMFS
[2025-11-25 02:35:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:35:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:35:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:35:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:35:22] 2.11.2.0 27053 170082 133708 153265 3 84 16171566 25165824 1060 130560 12 58400803 99.898 31654578 2245 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:35:22] CVMFS is ok
[2025-11-25 02:35:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:35:22] Checking for apptainer binary...
[2025-11-25 02:35:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:35:22] Running /usr/bin/apptainer --version
[2025-11-25 02:35:22] apptainer version 1.3.2-1.el7
[2025-11-25 02:35:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:35:38] cg-vwn373.simple-grid.lan
[2025-11-25 02:35:38] apptainer works
[2025-11-25 02:35:38] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:35:38] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:35:38] Starting ATLAS job with PandaID=6894239123
[2025-11-25 02:35:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:47:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:47:37] 2025-11-26 00:46:21,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:37] 2025-11-26 00:46:23,051 | INFO     | time since job start (83181s) is within the limit (172800.0s)
[2025-11-26 01:47:37] 2025-11-26 00:46:24,151 | INFO     | monitor loop #5631: job 0:6894239123 is in state 'finished'
[2025-11-26 01:47:37] 2025-11-26 00:46:24,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:37] 2025-11-26 00:46:25,060 | INFO     | time since job start (83183s) is within the limit (172800.0s)
[2025-11-26 01:47:37] 2025-11-26 00:46:26,656 | INFO     | monitor loop #5632: job 0:6894239123 is in state 'finished'
[2025-11-26 01:47:37] 2025-11-26 00:46:26,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:37] 2025-11-26 00:46:27,067 | INFO     | time since job start (83185s) is within the limit (172800.0s)
[2025-11-26 01:47:37] 2025-11-26 00:46:28,316 | INFO     | PID=9873 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 01:47:37] 2025-11-26 00:46:28,316 | INFO     | .. there are 9 such processes running
[2025-11-26 01:47:37] 2025-11-26 00:46:29,164 | INFO     | monitor loop #5633: job 0:6894239123 is in state 'finished'
[2025-11-26 01:47:37] 2025-11-26 00:46:29,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:37] 2025-11-26 00:46:29,316 | INFO     | time since job start (83187s) is within the limit (172800.0s)
[2025-11-26 01:47:37] 2025-11-26 00:46:31,326 | INFO     | time since job start (83189s) is within the limit (172800.0s)
[2025-11-26 01:47:37] 2025-11-26 00:46:31,674 | INFO     | monitor loop #5634: job 0:6894239123 is in state 'finished'
[2025-11-26 01:47:37] 2025-11-26 00:46:31,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,022 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 01:47:37] 2025-11-26 00:46:32,023 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 01:47:37] 2025-11-26 00:46:32,025 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6894239123/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,026 | INFO     | extracted standard info from prmon json
[2025-11-26 01:47:37] 2025-11-26 00:46:32,026 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:47:37] 2025-11-26 00:46:32,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:47:37] 2025-11-26 00:46:32,055 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:47:37] 2025-11-26 00:46:32,057 | INFO     | sum of square deviations: 768022542164.7936
[2025-11-26 01:47:37] 2025-11-26 00:46:32,109 | INFO     | sum of deviations: 1325352238494.6987
[2025-11-26 01:47:37] 2025-11-26 00:46:32,110 | INFO     | mean x: 1764076609.226164
[2025-11-26 01:47:37] 2025-11-26 00:46:32,110 | INFO     | mean y: 2867604.765705839
[2025-11-26 01:47:37] 2025-11-26 00:46:32,110 | INFO     | intersect: -3041343671.017874
[2025-11-26 01:47:37] 2025-11-26 00:46:32,112 | INFO     | chi2: 17.52165925577761
[2025-11-26 01:47:37] 2025-11-26 00:46:32,114 | INFO     | sum of square deviations: 759539856537.2479
[2025-11-26 01:47:37] 2025-11-26 00:46:32,174 | INFO     | sum of deviations: 1774727068915.0798
[2025-11-26 01:47:37] 2025-11-26 00:46:32,174 | INFO     | mean x: 1764076456.7307122
[2025-11-26 01:47:37] 2025-11-26 00:46:32,174 | INFO     | mean y: 2875682.5704747774
[2025-11-26 01:47:37] 2025-11-26 00:46:32,174 | INFO     | intersect: -4119033408.1110153
[2025-11-26 01:47:37] 2025-11-26 00:46:32,176 | INFO     | chi2: 14.274919236821791
[2025-11-26 01:47:37] 2025-11-26 00:46:32,176 | INFO     | current chi2=14.274919236821791 (change=18.52986621621029 %)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,176 | INFO     | right removable region: 1347
[2025-11-26 01:47:37] 2025-11-26 00:46:32,178 | INFO     | sum of square deviations: 759538844547.2478
[2025-11-26 01:47:37] 2025-11-26 00:46:32,250 | INFO     | sum of deviations: 923339869969.4255
[2025-11-26 01:47:37] 2025-11-26 00:46:32,251 | INFO     | mean x: 1764076761.7307122
[2025-11-26 01:47:37] 2025-11-26 00:46:32,251 | INFO     | mean y: 2874827.516320475
[2025-11-26 01:47:37] 2025-11-26 00:46:32,251 | INFO     | intersect: -2141640123.2146785
[2025-11-26 01:47:37] 2025-11-26 00:46:32,254 | INFO     | chi2: 15.19395255233093
[2025-11-26 01:47:37] 2025-11-26 00:46:32,255 | INFO     | current chi2=15.19395255233093 (change=13.284739016250068 %)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,255 | INFO     | left removable region: 10
[2025-11-26 01:47:37] 2025-11-26 00:46:32,257 | INFO     | sum of square deviations: 741096460529.4165
[2025-11-26 01:47:37] 2025-11-26 00:46:32,315 | INFO     | sum of deviations: 1383094374295.4512
[2025-11-26 01:47:37] 2025-11-26 00:46:32,316 | INFO     | mean x: 1764076731.2393417
[2025-11-26 01:47:37] 2025-11-26 00:46:32,316 | INFO     | mean y: 2886352.1892296188
[2025-11-26 01:47:37] 2025-11-26 00:46:32,316 | INFO     | intersect: -3289376845.316347
[2025-11-26 01:47:37] 2025-11-26 00:46:32,318 | INFO     | chi2: 11.116517449005919
[2025-11-26 01:47:37] 2025-11-26 00:46:32,318 | INFO     | current memory leak: 1.87 B/s (using 1337 data points, chi2=11.12)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,320 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,320 | INFO     | ..............................
[2025-11-26 01:47:37] 2025-11-26 00:46:32,320 | INFO     | . Timing measurements:
[2025-11-26 01:47:37] 2025-11-26 00:46:32,320 | INFO     | . get job = 0 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . initial setup = 12 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . payload setup = 199 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . stage-in = 0 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . payload execution = 82652 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . stage-out = 5 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | . log creation = 2 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,321 | INFO     | ..............................
[2025-11-26 01:47:37] 2025-11-26 00:46:32,446 | INFO     | 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | job summary report
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | --------------------------------------------------
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | PanDA job id: 6894239123
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | task id: 47533967
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | errors: (none)
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | pilot state: finished 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | transexitcode: 0
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | exeerrorcode: 0
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | exeerrordiag: 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | exitcode: 0
[2025-11-26 01:47:37] 2025-11-26 00:46:32,447 | INFO     | exitmsg: OK
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | cpuconsumptiontime: 337377 s
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | nevents: 1000
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | neventsw: 0
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | pid: 16334
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | pgrp: 16334
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | corecount: 8
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | event service: False
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | sizes: {0: 2284031, 1: 2284286, 12: 2284286, 23: 2284314, 34: 2284342, 44: 2284370, 55: 2284526, 66: 2284554, 76: 2284582, 87: 2284638, 98: 2284666, 109: 2284974, 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | --------------------------------------------------
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | 
[2025-11-26 01:47:37] 2025-11-26 00:46:32,448 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-26 01:47:37] 2025-11-26 00:46:33,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | job 6894239123 has completed (purged errors)
[2025-11-26 01:47:37] 2025-11-26 00:46:33,007 | INFO     | overall cleanup function is called
[2025-11-26 01:47:37] 2025-11-26 00:46:34,031 | INFO     | --- collectZombieJob: --- 10, [16334]
[2025-11-26 01:47:37] 2025-11-26 00:46:34,032 | INFO     | zombie collector waiting for pid 16334
[2025-11-26 01:47:37] 2025-11-26 00:46:34,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:47:37] 2025-11-26 00:46:34,032 | INFO     | collected zombie processes
[2025-11-26 01:47:37] 2025-11-26 00:46:34,032 | INFO     | will attempt to kill all subprocesses of pid=16334
[2025-11-26 01:47:37] 2025-11-26 00:46:34,145 | INFO     | process IDs to be killed: [16334] (in reverse order)
[2025-11-26 01:47:37] 2025-11-26 00:46:35,086 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:47:37] 2025-11-26 00:46:35,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:47:37] 2025-11-26 00:46:35,090 | INFO     | did not find any defunct processes belonging to 16334
[2025-11-26 01:47:37] 2025-11-26 00:46:35,093 | INFO     | did not find any defunct processes belonging to 16334
[2025-11-26 01:47:37] 2025-11-26 00:46:35,144 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:47:37] 2025-11-26 00:46:35,144 | INFO     | ready for new job
[2025-11-26 01:47:37] 2025-11-26 00:46:35,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:47:37] 2025-11-26 00:46:35,150 | INFO     | ***************************************
[2025-11-26 01:47:37] 2025-11-26 00:46:35,150 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:47:37] 2025-11-26 00:46:35,150 | INFO     | ***************************************
[2025-11-26 01:47:37] 2025-11-26 00:46:35,151 | INFO     | 
[2025-11-26 01:47:37] 2025-11-26 00:46:35,151 | INFO     | pilot is running in a VM
[2025-11-26 01:47:37] 2025-11-26 00:46:35,151 | INFO     | architecture information:
[2025-11-26 01:47:37] 2025-11-26 00:46:35,163 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:47:37] 2025-11-26 00:46:35,309 | INFO     | cat /etc/os-release:
[2025-11-26 01:47:37] NAME="CentOS Linux"
[2025-11-26 01:47:37] VERSION="7 (Core)"
[2025-11-26 01:47:37] ID="centos"
[2025-11-26 01:47:37] ID_LIKE="rhel fedora"
[2025-11-26 01:47:37] VERSION_ID="7"
[2025-11-26 01:47:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:47:37] ANSI_COLOR="0;31"
[2025-11-26 01:47:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:47:37] HOME_URL="https://www.centos.org/"
[2025-11-26 01:47:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:47:37] 
[2025-11-26 01:47:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:47:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:47:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:47:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:47:37] 
[2025-11-26 01:47:37] 2025-11-26 00:46:35,309 | INFO     | ***************************************
[2025-11-26 01:47:37] 2025-11-26 00:46:35,813 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-26 01:47:37] 2025-11-26 00:46:36,039 | INFO     | sufficient remaining disk space (495224619008 B)
[2025-11-26 01:47:37] 2025-11-26 00:46:36,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:47:37] 2025-11-26 00:46:36,040 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:47:37] 2025-11-26 00:46:36,040 | INFO     | update_server=False
[2025-11-26 01:47:37] 2025-11-26 00:46:36,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:47:37] 2025-11-26 00:46:36,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:47:37] 2025-11-26 00:46:36,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:47:37] 2025-11-26 00:46:36,049 | INFO     | aborting loop
[2025-11-26 01:47:37] 2025-11-26 00:46:36,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:47:37] 2025-11-26 00:46:36,488 | INFO     | all data control threads have been joined
[2025-11-26 01:47:37] 2025-11-26 00:46:36,877 | INFO     | all payload control threads have been joined
[2025-11-26 01:47:37] 2025-11-26 00:46:37,046 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:37,055 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:37,246 | INFO     | all job control threads have been joined
[2025-11-26 01:47:37] 2025-11-26 00:46:37,453 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:37,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:47:37] 2025-11-26 00:46:37,495 | INFO     | [data] control thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:37,883 | INFO     | [payload] control thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:37,958 | INFO     | [job] validate thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,044 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,048 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,170 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,227 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,243 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,251 | INFO     | [job] control thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,444 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,467 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:38,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:46:40,186 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:47:37] 2025-11-26 00:47:04,528 | INFO     | PID=9873 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 01:47:37] 2025-11-26 00:47:04,528 | INFO     | .. there are 9 such processes running
[2025-11-26 01:47:37] 2025-11-26 00:47:04,530 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:47:37] 2025-11-26 00:47:04,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:47:37] 2025-11-26 00:47:04,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:47:37] 2025-11-26 00:47:26,226 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:47:37] 2025-11-26 00:47:27,730 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682137163584)>', '<ExcThread(monitor, started 140681561491200)>']
[2025-11-26 01:47:37] 2025-11-26 00:47:28,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:47:37] 2025-11-26 00:47:28,672 | INFO     | [monitor] control thread has ended
[2025-11-26 01:47:37] 2025-11-26 00:47:32,757 | INFO     | all workflow threads have been joined
[2025-11-26 01:47:37] 2025-11-26 00:47:32,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:47:37] 2025-11-26 00:47:32,758 | INFO     | traces error code: 0
[2025-11-26 01:47:37] 2025-11-26 00:47:32,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:47:37] 2025-11-26 00:47:33,253 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:47:37] 2025-11-26 00:47:33,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:47:37] 2025-11-26 00:47:33,396 [wrapper] pilotpid: 9873
[2025-11-26 01:47:37] 2025-11-26 00:47:33,459 [wrapper] Pilot exit status: 0
[2025-11-26 01:47:37] 2025-11-26 00:47:33,819 [wrapper] pandaids: 6894239123
[2025-11-26 01:47:37] 2025-11-26 00:47:34,334 [wrapper] cleanup supervisor_pilot 21727 9874
[2025-11-26 01:47:37] 2025-11-26 00:47:34,430 [wrapper] Test setup, not cleaning
[2025-11-26 01:47:37] 2025-11-26 00:47:34,539 [wrapper] apfmon messages muted
[2025-11-26 01:47:37] 2025-11-26 00:47:34,639 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:47:37] 2025-11-26 00:47:34,741 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:47:37]  *** Error codes and diagnostics ***
[2025-11-26 01:47:37]     "exeErrorCode": 0,
[2025-11-26 01:47:37]     "exeErrorDiag": "",
[2025-11-26 01:47:37]     "pilotErrorCode": 0,
[2025-11-26 01:47:37]     "pilotErrorDiag": "",
[2025-11-26 01:47:37]  *** Listing of results directory ***
[2025-11-26 01:47:37] total 1330136
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-26 01:47:37] -rwx------. 1 boinc boinc     36292 Nov 21 01:35 runpilot2-wrapper.sh
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc      5112 Nov 21 01:35 queuedata.json
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:47:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:35 run_atlas
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:35 job.xml
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc      6393 Nov 25 02:35 init_data.xml
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc 411831843 Nov 25 02:35 EVNT.47493127._002048.pool.root.1
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:35 start_atlas.sh
[2025-11-26 01:47:37] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:35 shared
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc    590101 Nov 25 02:35 input.tar.gz
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:35 boinc_lockfile
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc      2784 Nov 25 02:35 pandaJob.out
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc    991801 Nov 25 02:39 agis_schedconf.cvmfs.json
[2025-11-26 01:47:37] drwx------. 5 boinc boinc      4096 Nov 25 02:40 pilot3
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:18 boinc_task_state.xml
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc 919305149 Nov 26 01:43 HITS.47533967._000193.pool.root.1
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc      1032 Nov 26 01:44 memory_monitor_summary.json
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc   1516240 Nov 26 01:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc   2438252 Nov 26 01:44 log.47533967._000193.job.log.tgz.1
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc      8637 Nov 26 01:46 heartbeat.json
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc        95 Nov 26 01:47 pilot_heartbeat.json
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc      8192 Nov 26 01:47 boinc_mmap_file
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc        29 Nov 26 01:47 wrapper_checkpoint.txt
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc      4884 Nov 26 01:47 pilotlog.txt
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc  11068870 Nov 26 01:47 log.47533967._000193.job.log.1
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc       353 Nov 26 01:47 output.list
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc       620 Nov 26 01:47 runtime_log
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc  13527040 Nov 26 01:47 result.tar.gz
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc       662 Nov 26 01:47 xH8MDmPIUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjjIKDmlRKSam.diag
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc      8833 Nov 26 01:47 runtime_log.err
[2025-11-26 01:47:37] -rw-r--r--. 1 boinc boinc     21524 Nov 26 01:47 stderr.txt
[2025-11-26 01:47:37] HITS file was successfully produced:
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc 919305149 Nov 26 01:43 shared/HITS.pool.root.1
[2025-11-26 01:47:37]  *** Contents of shared directory: ***
[2025-11-26 01:47:37] total 1313748
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc 411831843 Nov 25 02:35 ATLAS.root_0
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:35 start_atlas.sh
[2025-11-26 01:47:37] -rw-r--r--. 2 boinc boinc    590101 Nov 25 02:35 input.tar.gz
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc 919305149 Nov 26 01:43 HITS.pool.root.1
[2025-11-26 01:47:37] -rw-------. 1 boinc boinc  13527040 Nov 26 01:47 result.tar.gz
01:47:39 (6121): run_atlas exited; CPU time 337669.416314
01:47:39 (6121): called boinc_finish(0)

</stderr_txt>
]]>

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