Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:46 (2798): wrapper (7.7.26015): starting
03:36:46 (2798): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 03:36:46] Arguments: --nthreads 8
[2025-11-22 03:36:46] Threads: 8
[2025-11-22 03:36:46] Checking for CVMFS
[2025-11-22 03:36:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 03:36:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 03:36:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 03:36:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 03:36:47] 2.11.2.0 8539 111723 145060 153165 2 90 13697659 18432000 1845 130560 0 83482885 99.973 4670429 31465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 03:36:47] CVMFS is ok
[2025-11-22 03:36:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 03:36:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 03:36:47] Further information can be found at the LHC@home message board.
[2025-11-22 03:36:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 03:36:47] Checking for apptainer binary...
[2025-11-22 03:36:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 03:36:47] Running /usr/bin/apptainer --version
[2025-11-22 03:36:47] apptainer version 1.3.2-1.el7
[2025-11-22 03:36:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 03:36:48] c-206-1.aglt2.org
[2025-11-22 03:36:48] apptainer works
[2025-11-22 03:36:48] Set ATHENA_PROC_NUMBER=8
[2025-11-22 03:36:48] Set ATHENA_CORE_NUMBER=8
[2025-11-22 03:36:48] Starting ATLAS job with PandaID=6895331049
[2025-11-22 03:36:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:30:14 (17272): wrapper (7.7.26015): starting
08:30:14 (17272): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 08:30:14] Arguments: --nthreads 8
[2025-11-22 08:30:14] Threads: 8
[2025-11-22 08:30:14] This job has been restarted, cleaning up previous attempt
[2025-11-22 08:30:14] Checking for CVMFS
[2025-11-22 08:30:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 08:30:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 08:30:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 08:30:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 08:30:14] 2.11.2.0 8539 112017 144596 153173 1 56 13738644 18432001 1 130560 0 83746062 99.974 4680969 31472 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 08:30:14] CVMFS is ok
[2025-11-22 08:30:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 08:30:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 08:30:14] Further information can be found at the LHC@home message board.
[2025-11-22 08:30:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 08:30:14] Checking for apptainer binary...
[2025-11-22 08:30:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 08:30:14] Running /usr/bin/apptainer --version
[2025-11-22 08:30:14] apptainer version 1.3.2-1.el7
[2025-11-22 08:30:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 08:30:16] c-206-1.aglt2.org
[2025-11-22 08:30:16] apptainer works
[2025-11-22 08:30:16] Set ATHENA_PROC_NUMBER=8
[2025-11-22 08:30:16] Set ATHENA_CORE_NUMBER=8
[2025-11-22 08:30:16] Starting ATLAS job with PandaID=6895331049
[2025-11-22 08:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:38:28]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:38:28] 2025-11-23 08:37:47,218 | INFO     | monitor loop #4914: job 0:6895331049 is in state 'finished'
[2025-11-23 03:38:28] 2025-11-23 08:37:47,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:38:28] 2025-11-23 08:37:47,262 | INFO     | time since job start (68839s) is within the limit (172800.0s)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,120 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 03:38:28] 2025-11-23 08:37:48,123 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-11-23 03:38:28] 2025-11-23 08:37:48,126 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895331049/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,126 | INFO     | extracted standard info from prmon json
[2025-11-23 03:38:28] 2025-11-23 08:37:48,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:38:28] 2025-11-23 08:37:48,127 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:38:28] 2025-11-23 08:37:48,142 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:38:28] 2025-11-23 08:37:48,143 | INFO     | sum of square deviations: 445045723989.1454
[2025-11-23 03:38:28] 2025-11-23 08:37:48,166 | INFO     | sum of deviations: 2260398539516.521
[2025-11-23 03:38:28] 2025-11-23 08:37:48,166 | INFO     | mean x: 1763852629.2677305
[2025-11-23 03:38:28] 2025-11-23 08:37:48,166 | INFO     | mean y: 2921491.39893617
[2025-11-23 03:38:28] 2025-11-23 08:37:48,166 | INFO     | intersect: -8955730827.247759
[2025-11-23 03:38:28] 2025-11-23 08:37:48,167 | INFO     | chi2: 5.480442635066619
[2025-11-23 03:38:28] 2025-11-23 08:37:48,168 | INFO     | sum of square deviations: 439154007876.1803
[2025-11-23 03:38:28] 2025-11-23 08:37:48,195 | INFO     | sum of deviations: 2612796436466.3066
[2025-11-23 03:38:28] 2025-11-23 08:37:48,195 | INFO     | mean x: 1763852476.7711487
[2025-11-23 03:38:28] 2025-11-23 08:37:48,195 | INFO     | mean y: 2930610.892252894
[2025-11-23 03:38:28] 2025-11-23 08:37:48,195 | INFO     | intersect: -10491309184.499344
[2025-11-23 03:38:28] 2025-11-23 08:37:48,196 | INFO     | chi2: 2.724844310127259
[2025-11-23 03:38:28] 2025-11-23 08:37:48,196 | INFO     | current chi2=2.724844310127259 (change=50.28057966171675 %)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,197 | INFO     | sum of square deviations: 433314525300.69855
[2025-11-23 03:38:28] 2025-11-23 08:37:48,220 | INFO     | sum of deviations: 2723767803607.1885
[2025-11-23 03:38:28] 2025-11-23 08:37:48,220 | INFO     | mean x: 1763852324.2745974
[2025-11-23 03:38:28] 2025-11-23 08:37:48,220 | INFO     | mean y: 2933505.256708408
[2025-11-23 03:38:28] 2025-11-23 08:37:48,220 | INFO     | intersect: -11084449655.60755
[2025-11-23 03:38:28] 2025-11-23 08:37:48,221 | INFO     | chi2: 2.2993868928414205
[2025-11-23 03:38:28] 2025-11-23 08:37:48,221 | INFO     | current chi2=2.2993868928414205 (change=15.614008319835648 %)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,222 | INFO     | right removable region: 1117
[2025-11-23 03:38:28] 2025-11-23 08:37:48,223 | INFO     | sum of square deviations: 439153548180.72705
[2025-11-23 03:38:28] 2025-11-23 08:37:48,247 | INFO     | sum of deviations: 1979260984175.3203
[2025-11-23 03:38:28] 2025-11-23 08:37:48,247 | INFO     | mean x: 1763852781.7702582
[2025-11-23 03:38:28] 2025-11-23 08:37:48,247 | INFO     | mean y: 2928757.7880676757
[2025-11-23 03:38:28] 2025-11-23 08:37:48,247 | INFO     | intersect: -7946739432.870061
[2025-11-23 03:38:28] 2025-11-23 08:37:48,248 | INFO     | chi2: 3.5155313362671774
[2025-11-23 03:38:28] 2025-11-23 08:37:48,248 | INFO     | current chi2=3.5155313362671774 (change=35.8531496384426 %)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,249 | INFO     | sum of square deviations: 433313743038.88055
[2025-11-23 03:38:28] 2025-11-23 08:37:48,272 | INFO     | sum of deviations: 1890120838232.1538
[2025-11-23 03:38:28] 2025-11-23 08:37:48,272 | INFO     | mean x: 1763852934.2710197
[2025-11-23 03:38:28] 2025-11-23 08:37:48,273 | INFO     | mean y: 2931085.270125224
[2025-11-23 03:38:28] 2025-11-23 08:37:48,273 | INFO     | intersect: -7691021022.64499
[2025-11-23 03:38:28] 2025-11-23 08:37:48,274 | INFO     | chi2: 3.4343787506251098
[2025-11-23 03:38:28] 2025-11-23 08:37:48,274 | INFO     | current chi2=3.4343787506251098 (change=2.308401714553799 %)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,274 | INFO     | left removable region: 20
[2025-11-23 03:38:28] 2025-11-23 08:37:48,275 | INFO     | sum of square deviations: 409352271572.05505
[2025-11-23 03:38:28] 2025-11-23 08:37:48,296 | INFO     | sum of deviations: 2223417896486.205
[2025-11-23 03:38:28] 2025-11-23 08:37:48,296 | INFO     | mean x: 1763852903.78031
[2025-11-23 03:38:28] 2025-11-23 08:37:48,296 | INFO     | mean y: 2946873.5651777573
[2025-11-23 03:38:28] 2025-11-23 08:37:48,297 | INFO     | intersect: -9577510804.056335
[2025-11-23 03:38:28] 2025-11-23 08:37:48,297 | INFO     | chi2: 0.18115796055670286
[2025-11-23 03:38:28] 2025-11-23 08:37:48,298 | INFO     | current memory leak: 5.43 B/s (using 1097 data points, chi2=0.18)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,298 | INFO     | could have reported an average CPU frequency of 2584 MHz (41 samples)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | ..............................
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . Timing measurements:
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . get job = 0 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . initial setup = 2 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . payload setup = 6 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . stage-in = 0 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . payload execution = 68803 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . stage-out = 3 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | . log creation = 0 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,299 | INFO     | ..............................
[2025-11-23 03:38:28] 2025-11-23 08:37:48,737 | INFO     | 
[2025-11-23 03:38:28] 2025-11-23 08:37:48,743 | INFO     | job summary report
[2025-11-23 03:38:28] 2025-11-23 08:37:48,743 | INFO     | --------------------------------------------------
[2025-11-23 03:38:28] 2025-11-23 08:37:48,743 | INFO     | PanDA job id: 6895331049
[2025-11-23 03:38:28] 2025-11-23 08:37:48,743 | INFO     | task id: 47556137
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | errors: (none)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | pilot state: finished 
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | transexitcode: 0
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | exeerrorcode: 0
[2025-11-23 03:38:28] 2025-11-23 08:37:48,744 | INFO     | exeerrordiag: 
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | exitcode: 0
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | exitmsg: OK
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | cpuconsumptiontime: 537989 s
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | nevents: 1000
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | neventsw: 0
[2025-11-23 03:38:28] 2025-11-23 08:37:48,745 | INFO     | pid: 16398
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | pgrp: 16398
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | corecount: 8
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | event service: False
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | sizes: {0: 2298636, 1: 2298835, 5: 2299097, 11: 2299153, 68814: 2355154, 68818: 2364148, 68820: 2364332, 68824: 2364674}
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | --------------------------------------------------
[2025-11-23 03:38:28] 2025-11-23 08:37:48,746 | INFO     | 
[2025-11-23 03:38:28] 2025-11-23 08:37:48,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 03:38:28] 2025-11-23 08:37:48,765 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,765 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,765 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:38:28] 2025-11-23 08:37:48,769 | INFO     | job 6895331049 has completed (purged errors)
[2025-11-23 03:38:28] 2025-11-23 08:37:48,769 | INFO     | overall cleanup function is called
[2025-11-23 03:38:28] 2025-11-23 08:37:49,785 | INFO     | --- collectZombieJob: --- 10, [16398]
[2025-11-23 03:38:28] 2025-11-23 08:37:49,785 | INFO     | zombie collector waiting for pid 16398
[2025-11-23 03:38:28] 2025-11-23 08:37:49,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:38:28] 2025-11-23 08:37:49,785 | INFO     | collected zombie processes
[2025-11-23 03:38:28] 2025-11-23 08:37:49,785 | INFO     | will attempt to kill all subprocesses of pid=16398
[2025-11-23 03:38:28] 2025-11-23 08:37:49,901 | INFO     | process IDs to be killed: [16398] (in reverse order)
[2025-11-23 03:38:28] 2025-11-23 08:37:49,960 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:38:28] 2025-11-23 08:37:49,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:38:28] 2025-11-23 08:37:49,963 | INFO     | did not find any defunct processes belonging to 16398
[2025-11-23 03:38:28] 2025-11-23 08:37:49,965 | INFO     | did not find any defunct processes belonging to 16398
[2025-11-23 03:38:28] 2025-11-23 08:37:49,967 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:38:28] 2025-11-23 08:37:49,967 | INFO     | ready for new job
[2025-11-23 03:38:28] 2025-11-23 08:37:49,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:38:28] 2025-11-23 08:37:49,971 | INFO     | ***************************************
[2025-11-23 03:38:28] 2025-11-23 08:37:49,971 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:38:28] 2025-11-23 08:37:49,971 | INFO     | ***************************************
[2025-11-23 03:38:28] 2025-11-23 08:37:49,971 | INFO     | 
[2025-11-23 03:38:28] 2025-11-23 08:37:49,972 | INFO     | architecture information:
[2025-11-23 03:38:28] 2025-11-23 08:37:49,972 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:38:28] 2025-11-23 08:37:49,982 | INFO     | cat /etc/os-release:
[2025-11-23 03:38:28] NAME="CentOS Linux"
[2025-11-23 03:38:28] VERSION="7 (Core)"
[2025-11-23 03:38:28] ID="centos"
[2025-11-23 03:38:28] ID_LIKE="rhel fedora"
[2025-11-23 03:38:28] VERSION_ID="7"
[2025-11-23 03:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:38:28] ANSI_COLOR="0;31"
[2025-11-23 03:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:38:28] HOME_URL="https://www.centos.org/"
[2025-11-23 03:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:38:28] 
[2025-11-23 03:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:38:28] 
[2025-11-23 03:38:28] 2025-11-23 08:37:49,982 | INFO     | ***************************************
[2025-11-23 03:38:28] 2025-11-23 08:37:50,486 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 03:38:28] 2025-11-23 08:37:50,503 | INFO     | sufficient remaining disk space (24894242816 B)
[2025-11-23 03:38:28] 2025-11-23 08:37:50,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:38:28] 2025-11-23 08:37:50,504 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:38:28] 2025-11-23 08:37:50,504 | INFO     | update_server=False
[2025-11-23 03:38:28] 2025-11-23 08:37:50,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:38:28] 2025-11-23 08:37:50,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:38:28] 2025-11-23 08:37:50,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:38:28] 2025-11-23 08:37:50,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:38:28] 2025-11-23 08:37:50,727 | INFO     | aborting loop
[2025-11-23 03:38:28] 2025-11-23 08:37:51,004 | INFO     | all payload control threads have been joined
[2025-11-23 03:38:28] 2025-11-23 08:37:51,509 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:51,539 | INFO     | all job control threads have been joined
[2025-11-23 03:38:28] 2025-11-23 08:37:51,606 | INFO     | all data control threads have been joined
[2025-11-23 03:38:28] 2025-11-23 08:37:51,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:51,732 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:51,883 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:51,978 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:51,983 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,009 | INFO     | [payload] control thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,038 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,225 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,510 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,544 | INFO     | [job] control thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,612 | INFO     | [data] control thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,844 | INFO     | [job] validate thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:52,977 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:53,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:38:28] 2025-11-23 08:37:54,392 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:37:54,510 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:38:28] 2025-11-23 08:38:20,456 | INFO     | PID=28391 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 03:38:28] 2025-11-23 08:38:20,457 | INFO     | .. there are 3 such processes running
[2025-11-23 03:38:28] 2025-11-23 08:38:20,457 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:38:28] 2025-11-23 08:38:20,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:38:28] 2025-11-23 08:38:20,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:38:28] 2025-11-23 08:38:23,079 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:38:28] 2025-11-23 08:38:23,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931540301632)>', '<ExcThread(monitor, started 139930940454656)>']
[2025-11-23 03:38:28] 2025-11-23 08:38:23,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:38:28] 2025-11-23 08:38:23,473 | INFO     | [monitor] control thread has ended
[2025-11-23 03:38:28] 2025-11-23 08:38:28,397 | INFO     | all workflow threads have been joined
[2025-11-23 03:38:28] 2025-11-23 08:38:28,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:38:28] 2025-11-23 08:38:28,398 | INFO     | traces error code: 0
[2025-11-23 03:38:28] 2025-11-23 08:38:28,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:38:28] 2025-11-23 08:38:28,502 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:38:28] 2025-11-23 08:38:28,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:38:28] 2025-11-23 08:38:28,507 [wrapper] pilotpid: 28391
[2025-11-23 03:38:28] 2025-11-23 08:38:28,513 [wrapper] Pilot exit status: 0
[2025-11-23 03:38:28] 2025-11-23 08:38:28,523 [wrapper] pandaids: 6895331049 6895331049
[2025-11-23 03:38:28] 2025-11-23 08:38:28,566 [wrapper] cleanup supervisor_pilot 13988 28392
[2025-11-23 03:38:28] 2025-11-23 08:38:28,568 [wrapper] Test setup, not cleaning
[2025-11-23 03:38:28] 2025-11-23 08:38:28,571 [wrapper] apfmon messages muted
[2025-11-23 03:38:28] 2025-11-23 08:38:28,573 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:38:28] 2025-11-23 08:38:28,575 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:38:28]  *** Error codes and diagnostics ***
[2025-11-23 03:38:28]     "exeErrorCode": 0,
[2025-11-23 03:38:28]     "exeErrorDiag": "",
[2025-11-23 03:38:28]     "pilotErrorCode": 0,
[2025-11-23 03:38:28]     "pilotErrorDiag": "",
[2025-11-23 03:38:28]  *** Listing of results directory ***
[2025-11-23 03:38:28] total 1724976
[2025-11-23 03:38:28] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 17:05 pilot3.tar.gz
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 17:18 queuedata.json
[2025-11-23 03:38:28] -rwx------ 1 boincer umatlas     36292 Nov 21 17:19 runpilot2-wrapper.sh
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas       100 Nov 22 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:38:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 03:36 run_atlas
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas       105 Nov 22 03:36 job.xml
[2025-11-23 03:38:28] -rw-r--r-- 3 boincer umatlas 411776205 Nov 22 03:36 EVNT.47483658._000156.pool.root.1
[2025-11-23 03:38:28] -rw-r--r-- 3 boincer umatlas 411776205 Nov 22 03:36 ATLAS.root_0
[2025-11-23 03:38:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 03:36 start_atlas.sh
[2025-11-23 03:38:28] drwxrwx--x 2 boincer umatlas      4096 Nov 22 03:36 shared
[2025-11-23 03:38:28] -rw-r--r-- 2 boincer umatlas    590102 Nov 22 03:36 input.tar.gz
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas         0 Nov 22 03:36 boinc_lockfile
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 08:30 pandaJob.out
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas        57 Nov 22 08:30 setup.sh.local
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas    989768 Nov 22 08:30 agis_schedconf.cvmfs.json
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas       533 Nov 23 03:24 boinc_task_state.xml
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas      5953 Nov 23 03:36 init_data.xml
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas 915220828 Nov 23 03:37 HITS.47556137._001553.pool.root.1
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas        96 Nov 23 03:37 pilot_heartbeat.json
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas      1078 Nov 23 03:37 memory_monitor_summary.json
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas   1526164 Nov 23 03:37 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas   2302645 Nov 23 03:37 log.47556137._001553.job.log.tgz.1
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas      8661 Nov 23 03:37 heartbeat.json
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 03:38 boinc_mmap_file
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas        29 Nov 23 03:38 wrapper_checkpoint.txt
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas      4821 Nov 23 03:38 pilotlog.txt
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas   9533969 Nov 23 03:38 log.47556137._001553.job.log.1
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas       353 Nov 23 03:38 output.list
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas       620 Nov 23 03:38 runtime_log
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas  11857920 Nov 23 03:38 result.tar.gz
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas      9423 Nov 23 03:38 runtime_log.err
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas       792 Nov 23 03:38 b4hNDmceog8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6pHKDmWubV1m.diag
[2025-11-23 03:38:28] -rw-r--r-- 1 boincer umatlas     23448 Nov 23 03:38 stderr.txt
[2025-11-23 03:38:28] HITS file was successfully produced:
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas 915220828 Nov 23 03:37 shared/HITS.pool.root.1
[2025-11-23 03:38:28]  *** Contents of shared directory: ***
[2025-11-23 03:38:28] total 1308080
[2025-11-23 03:38:28] -rw-r--r-- 3 boincer umatlas 411776205 Nov 22 03:36 ATLAS.root_0
[2025-11-23 03:38:28] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 03:36 start_atlas.sh
[2025-11-23 03:38:28] -rw-r--r-- 2 boincer umatlas    590102 Nov 22 03:36 input.tar.gz
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas 915220828 Nov 23 03:37 HITS.pool.root.1
[2025-11-23 03:38:28] -rw------- 1 boincer umatlas  11857920 Nov 23 03:38 result.tar.gz
03:38:30 (17272): run_atlas exited; CPU time 537597.854232
03:38:30 (17272): called boinc_finish(0)

</stderr_txt>
]]>

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