Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:28:34 (22564): wrapper (7.7.26015): starting
21:28:34 (22564): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 21:28:34] Arguments: --nthreads 12
[2025-11-22 21:28:34] Threads: 12
[2025-11-22 21:28:34] Checking for CVMFS
[2025-11-22 21:28:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 21:28:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 21:28:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 21:28:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 21:28:38] 2.13.3.0 5957 1681 115092 153185 3 89 4745628 102400000 1668 130560 29 5532426 99.995 67225 11 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 21:28:38] CVMFS is ok
[2025-11-22 21:28:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 21:28:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 21:28:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 21:28:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 21:28:38] Further information can be found at the LHC@home message board.
[2025-11-22 21:28:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 21:28:38] Checking for apptainer binary...
[2025-11-22 21:28:38] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 21:28:38] apptainer is not installed, using version from CVMFS
[2025-11-22 21:28:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 21:28:38] crocidura-russula
[2025-11-22 21:28:38] apptainer works
[2025-11-22 21:28:38] Set ATHENA_PROC_NUMBER=12
[2025-11-22 21:28:38] Set ATHENA_CORE_NUMBER=12
[2025-11-22 21:28:38] Starting ATLAS job with PandaID=6894292391
[2025-11-22 21:28:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:20:18]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:20:18] 2025-11-23 01:19:24,015 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:20:18] 2025-11-23 01:19:24,218 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | job 6894292391 has state=finished
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | preparing for final server update for job 6894292391 in state='finished'
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | this job has now completed (state=finished)
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | log transfer has been attempted: DONE
[2025-11-23 01:20:18] 2025-11-23 01:19:24,445 | INFO     | job 6894292391 has finished - writing final server update
[2025-11-23 01:20:18] 2025-11-23 01:19:24,446 | INFO     | total number of processed events: 1000 (read)
[2025-11-23 01:20:18] 2025-11-23 01:19:24,446 | INFO     | executing command: lscpu
[2025-11-23 01:20:18] 2025-11-23 01:19:24,465 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-23 01:20:18] 2025-11-23 01:19:24,567 | INFO     | time since job start (13832s) is within the limit (172800.0s)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,058 | INFO     | monitor loop #1027: job 0:6894292391 is in state 'finished'
[2025-11-23 01:20:18] 2025-11-23 01:19:26,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,428 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:20:18] 2025-11-23 01:19:26,432 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4392.968833333335
[2025-11-23 01:20:18] 2025-11-23 01:19:26,436 | INFO     | using path: /virtma/boinc/slots/1/PanDA_Pilot-6894292391/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,436 | INFO     | extracted standard info from prmon json
[2025-11-23 01:20:18] 2025-11-23 01:19:26,436 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:20:18] 2025-11-23 01:19:26,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:20:18] 2025-11-23 01:19:26,438 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:20:18] 2025-11-23 01:19:26,438 | INFO     | sum of square deviations: 3627000098.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,438 | INFO     | sum of deviations: 359060137360.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | mean x: 1763853843.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | mean y: 2835308.898678414
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | intersect: -174612435173.1105
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | chi2: 36.958301543663765
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | sum of square deviations: 3392567795.5
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | sum of deviations: 437601570182.5
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | mean x: 1763853690.5
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | mean y: 2886361.0135135134
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | intersect: -227513611779.07422
[2025-11-23 01:20:18] 2025-11-23 01:19:26,439 | INFO     | chi2: 31.555555034166186
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | current chi2=31.555555034166186 (change=14.618492419394855 %)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | right removable region: 221
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | sum of square deviations: 3392567795.5
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | sum of deviations: 280713221276.50006
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | mean x: 1763853995.5
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | mean y: 2886225.490990991
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | intersect: -145944716529.85983
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | chi2: 33.46578784152057
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | current chi2=33.46578784152057 (change=9.449876093513174 %)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,440 | INFO     | left removable region: 10
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | sum of square deviations: 2912836010.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | sum of deviations: 301402838540.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | mean x: 1763853965.0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | mean y: 3002584.511848341
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | intersect: -182510049985.52756
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | chi2: 24.511890295469183
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | current memory leak: 103.47 B/s (using 211 data points, chi2=24.51)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | could have reported an average CPU frequency of 4227 MHz (11 samples)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,441 | INFO     | ..............................
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . Timing measurements:
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . get job = 0 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . initial setup = 8 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . payload setup = 2 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . stage-in = 0 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . payload execution = 13802 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . stage-out = 9 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | . log creation = 0 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,442 | INFO     | ..............................
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | 
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | job summary report
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | --------------------------------------------------
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | PanDA job id: 6894292391
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | task id: 47533967
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | errors: (none)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | pilot state: finished 
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | transexitcode: 0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | exeerrorcode: 0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | exeerrordiag: 
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | exitcode: 0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,472 | INFO     | exitmsg: OK
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | cpuconsumptiontime: 124735 s
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | nevents: 1000
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | neventsw: 0
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | pid: 33263
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | pgrp: 33263
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | corecount: 12
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | event service: False
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | sizes: {0: 2298755, 3: 2299017, 11: 2299045, 13809: 2330464, 13819: 2339512, 13822: 2339702}
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | --------------------------------------------------
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | 
[2025-11-23 01:20:18] 2025-11-23 01:19:26,473 | INFO     | executing command: ls -lF /virtma/boinc/slots/1
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | job 6894292391 has completed (purged errors)
[2025-11-23 01:20:18] 2025-11-23 01:19:26,487 | INFO     | overall cleanup function is called
[2025-11-23 01:20:18] 2025-11-23 01:19:27,498 | INFO     | --- collectZombieJob: --- 10, [33263]
[2025-11-23 01:20:18] 2025-11-23 01:19:27,498 | INFO     | zombie collector waiting for pid 33263
[2025-11-23 01:20:18] 2025-11-23 01:19:27,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:20:18] 2025-11-23 01:19:27,498 | INFO     | collected zombie processes
[2025-11-23 01:20:18] 2025-11-23 01:19:27,498 | INFO     | will attempt to kill all subprocesses of pid=33263
[2025-11-23 01:20:18] 2025-11-23 01:19:27,581 | INFO     | process IDs to be killed: [33263] (in reverse order)
[2025-11-23 01:20:18] 2025-11-23 01:19:27,616 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:20:18] 2025-11-23 01:19:27,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:20:18] 2025-11-23 01:19:27,620 | INFO     | did not find any defunct processes belonging to 33263
[2025-11-23 01:20:18] 2025-11-23 01:19:27,624 | INFO     | did not find any defunct processes belonging to 33263
[2025-11-23 01:20:18] 2025-11-23 01:19:27,625 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:20:18] 2025-11-23 01:19:27,625 | INFO     | ready for new job
[2025-11-23 01:20:18] 2025-11-23 01:19:27,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:20:18] 2025-11-23 01:19:27,626 | INFO     | ***************************************
[2025-11-23 01:20:18] 2025-11-23 01:19:27,626 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:20:18] 2025-11-23 01:19:27,626 | INFO     | ***************************************
[2025-11-23 01:20:18] 2025-11-23 01:19:27,626 | INFO     | 
[2025-11-23 01:20:18] 2025-11-23 01:19:27,628 | INFO     | architecture information:
[2025-11-23 01:20:18] 2025-11-23 01:19:27,628 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:20:18] 2025-11-23 01:19:27,637 | INFO     | cat /etc/os-release:
[2025-11-23 01:20:18] NAME="CentOS Linux"
[2025-11-23 01:20:18] VERSION="7 (Core)"
[2025-11-23 01:20:18] ID="centos"
[2025-11-23 01:20:18] ID_LIKE="rhel fedora"
[2025-11-23 01:20:18] VERSION_ID="7"
[2025-11-23 01:20:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:20:18] ANSI_COLOR="0;31"
[2025-11-23 01:20:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:20:18] HOME_URL="https://www.centos.org/"
[2025-11-23 01:20:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:20:18] 
[2025-11-23 01:20:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:20:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:20:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:20:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:20:18] 
[2025-11-23 01:20:18] 2025-11-23 01:19:27,637 | INFO     | ***************************************
[2025-11-23 01:20:18] 2025-11-23 01:19:28,138 | INFO     | executing command: df -mP /virtma/boinc/slots/1
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | INFO     | sufficient remaining disk space (962413461504 B)
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | INFO     | update_server=False
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:20:18] 2025-11-23 01:19:28,148 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:20:18] 2025-11-23 01:19:28,168 | INFO     | all job control threads have been joined
[2025-11-23 01:20:18] 2025-11-23 01:19:28,561 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 01:20:18] 2025-11-23 01:19:28,561 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 01:20:18] 2025-11-23 01:19:28,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:20:18] 2025-11-23 01:19:28,561 | INFO     | will abort loop
[2025-11-23 01:20:18] 2025-11-23 01:19:29,113 | INFO     | all data control threads have been joined
[2025-11-23 01:20:18] 2025-11-23 01:19:29,153 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,154 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,174 | INFO     | [job] control thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,538 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,567 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:20:18] 2025-11-23 01:19:29,618 | INFO     | all payload control threads have been joined
[2025-11-23 01:20:18] 2025-11-23 01:19:29,770 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,778 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,866 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:29,870 | INFO     | [job] validate thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:30,118 | INFO     | [data] control thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:30,244 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:30,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:20:18] 2025-11-23 01:19:30,474 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:30,622 | INFO     | [payload] control thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:31,583 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:34,258 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:20:18] 2025-11-23 01:19:57,732 | INFO     | PID=26473 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:20:18] 2025-11-23 01:19:57,732 | INFO     | .. there are 3 such processes running
[2025-11-23 01:20:18] 2025-11-23 01:19:57,733 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:20:18] 2025-11-23 01:19:57,733 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:20:18] 2025-11-23 01:19:57,733 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:20:18] 2025-11-23 01:20:12,171 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:20:18] 2025-11-23 01:20:13,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021186045760)>', '<ExcThread(monitor, started 140020790830848)>']
[2025-11-23 01:20:18] 2025-11-23 01:20:13,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:20:18] 2025-11-23 01:20:13,806 | INFO     | [monitor] control thread has ended
[2025-11-23 01:20:18] 2025-11-23 01:20:18,750 | INFO     | all workflow threads have been joined
[2025-11-23 01:20:18] 2025-11-23 01:20:18,750 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:20:18] 2025-11-23 01:20:18,750 | INFO     | traces error code: 0
[2025-11-23 01:20:18] 2025-11-23 01:20:18,750 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:20:18] 2025-11-23 01:20:18,810 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:20:18] 2025-11-23 01:20:18,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:20:18] 2025-11-23 01:20:18,813 [wrapper] pilotpid: 26473
[2025-11-23 01:20:18] 2025-11-23 01:20:18,814 [wrapper] Pilot exit status: 0
[2025-11-23 01:20:18] 2025-11-23 01:20:18,820 [wrapper] pandaids: 6894292391
[2025-11-23 01:20:18] 2025-11-23 01:20:18,842 [wrapper] cleanup supervisor_pilot 16110 26474
[2025-11-23 01:20:18] 2025-11-23 01:20:18,844 [wrapper] Test setup, not cleaning
[2025-11-23 01:20:18] 2025-11-23 01:20:18,845 [wrapper] apfmon messages muted
[2025-11-23 01:20:18] 2025-11-23 01:20:18,847 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:20:18] 2025-11-23 01:20:18,848 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:20:18]  *** Error codes and diagnostics ***
[2025-11-23 01:20:18]     "exeErrorCode": 0,
[2025-11-23 01:20:18]     "exeErrorDiag": "",
[2025-11-23 01:20:18]     "pilotErrorCode": 0,
[2025-11-23 01:20:18]     "pilotErrorDiag": "",
[2025-11-23 01:20:18]  *** Listing of results directory ***
[2025-11-23 01:20:18] total 1298496
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc    576529 Nov 21 12:22 pilot3.tar.gz
[2025-11-23 01:20:18] -rwx------ 1 boinc boinc     36292 Nov 21 12:27 runpilot2-wrapper.sh
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:27 queuedata.json
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc       100 Nov 22 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:20:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 21:28 run_atlas
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc       105 Nov 22 21:28 job.xml
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc     15847 Nov 22 21:28 start_atlas.sh
[2025-11-23 01:20:18] drwxrwx--x 2 boinc boinc        68 Nov 22 21:28 shared
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc    590105 Nov 22 21:28 input.tar.gz
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc      8919 Nov 22 21:28 init_data.xml
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc 411610691 Nov 22 21:28 EVNT.47493127._002450.pool.root.1
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc         0 Nov 22 21:28 boinc_setup_complete
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc         0 Nov 22 21:28 boinc_lockfile
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc      2785 Nov 22 21:28 pandaJob.out
[2025-11-23 01:20:18] -rw------- 1 boinc boinc    989768 Nov 22 21:28 agis_schedconf.cvmfs.json
[2025-11-23 01:20:18] drwx------ 5 boinc boinc      4096 Nov 22 21:28 pilot3
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc       532 Nov 23 01:00 boinc_task_state.xml
[2025-11-23 01:20:18] -rw------- 1 boinc boinc 906253934 Nov 23 01:18 HITS.47533967._004216.pool.root.1
[2025-11-23 01:20:18] -rw------- 1 boinc boinc      1051 Nov 23 01:19 memory_monitor_summary.json
[2025-11-23 01:20:18] -rw------- 1 boinc boinc   1526164 Nov 23 01:19 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:20:18] -rw------- 1 boinc boinc   1955901 Nov 23 01:19 log.47533967._004216.job.log.tgz.1
[2025-11-23 01:20:18] -rw------- 1 boinc boinc      8640 Nov 23 01:19 heartbeat.json
[2025-11-23 01:20:18] -rw------- 1 boinc boinc        95 Nov 23 01:19 pilot_heartbeat.json
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc      8192 Nov 23 01:20 boinc_mmap_file
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc        29 Nov 23 01:20 wrapper_checkpoint.txt
[2025-11-23 01:20:18] -rw------- 1 boinc boinc      5007 Nov 23 01:20 pilotlog.txt
[2025-11-23 01:20:18] -rw------- 1 boinc boinc   1986296 Nov 23 01:20 log.47533967._004216.job.log.1
[2025-11-23 01:20:18] -rw------- 1 boinc boinc       353 Nov 23 01:20 output.list
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc       620 Nov 23 01:20 runtime_log
[2025-11-23 01:20:18] -rw------- 1 boinc boinc   3962880 Nov 23 01:20 result.tar.gz
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc      8814 Nov 23 01:20 runtime_log.err
[2025-11-23 01:20:18] -rw------- 1 boinc boinc       664 Nov 23 01:20 Kq3LDmdPfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4PJKDmWI1Aan.diag
[2025-11-23 01:20:18] -rw-r--r-- 1 boinc boinc     22107 Nov 23 01:20 stderr.txt
[2025-11-23 01:20:18] HITS file was successfully produced:
[2025-11-23 01:20:18] -rw------- 1 boinc boinc 906253934 Nov 23 01:18 shared/HITS.pool.root.1
[2025-11-23 01:20:18]  *** Contents of shared directory: ***
[2025-11-23 01:20:18] total 1291448
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc     15847 Nov 22 21:28 start_atlas.sh
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc    590105 Nov 22 21:28 input.tar.gz
[2025-11-23 01:20:18] -rw-r--r-- 2 boinc boinc 411610691 Nov 22 21:28 ATLAS.root_0
[2025-11-23 01:20:18] -rw------- 1 boinc boinc 906253934 Nov 23 01:18 HITS.pool.root.1
[2025-11-23 01:20:18] -rw------- 1 boinc boinc   3962880 Nov 23 01:20 result.tar.gz
01:20:20 (22564): run_atlas exited; CPU time 124740.876718
01:20:20 (22564): called boinc_finish(0)

</stderr_txt>
]]>

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