Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:42:52 (23687): wrapper (7.7.26015): starting
03:42:52 (23687): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 03:42:52] Arguments: --nthreads 8
[2025-11-25 03:42:52] Threads: 8
[2025-11-25 03:42:52] Checking for CVMFS
[2025-11-25 03:42:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:42:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:42:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:42:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:42:55] 2.11.2.0 17493 85701 124076 153266 0 85 18546158 25165825 1027 130560 11 24396814 99.852 17279948 1701 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 03:42:55] CVMFS is ok
[2025-11-25 03:42:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:42:55] Checking for apptainer binary...
[2025-11-25 03:42:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 03:42:55] Running /usr/bin/apptainer --version
[2025-11-25 03:42:55] apptainer version 1.3.2-1.el7
[2025-11-25 03:42:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:43:08] cg-vwn341.simple-grid.lan
[2025-11-25 03:43:08] apptainer works
[2025-11-25 03:43:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 03:43:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 03:43:08] Starting ATLAS job with PandaID=6894292410
[2025-11-25 03:43:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:37:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:37:05] 2025-11-26 03:36:11,297 | INFO     | PID=27419 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 04:37:05] 2025-11-26 03:36:11,297 | INFO     | .. there are 9 such processes running
[2025-11-26 04:37:05] 2025-11-26 03:36:12,299 | INFO     | time since job start (89274s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:12,962 | INFO     | monitor loop #6011: job 0:6894292410 is in state 'finished'
[2025-11-26 04:37:05] 2025-11-26 03:36:12,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:37:05] 2025-11-26 03:36:14,312 | INFO     | time since job start (89276s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:15,467 | INFO     | monitor loop #6012: job 0:6894292410 is in state 'finished'
[2025-11-26 04:37:05] 2025-11-26 03:36:15,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:37:05] 2025-11-26 03:36:16,320 | INFO     | time since job start (89278s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:17,979 | INFO     | monitor loop #6013: job 0:6894292410 is in state 'finished'
[2025-11-26 04:37:05] 2025-11-26 03:36:17,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:37:05] 2025-11-26 03:36:18,325 | INFO     | time since job start (89280s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:20,332 | INFO     | time since job start (89282s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:20,493 | INFO     | monitor loop #6014: job 0:6894292410 is in state 'finished'
[2025-11-26 04:37:05] 2025-11-26 03:36:20,494 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:37:05] 2025-11-26 03:36:21,998 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 04:37:05] 2025-11-26 03:36:21,999 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 04:37:05] 2025-11-26 03:36:22,001 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6894292410/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,002 | INFO     | extracted standard info from prmon json
[2025-11-26 04:37:05] 2025-11-26 03:36:22,002 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:37:05] 2025-11-26 03:36:22,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:37:05] 2025-11-26 03:36:22,028 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:37:05] 2025-11-26 03:36:22,030 | INFO     | sum of square deviations: 951211863223.182
[2025-11-26 04:37:05] 2025-11-26 03:36:22,105 | INFO     | sum of deviations: 4260887092287.0713
[2025-11-26 04:37:05] 2025-11-26 03:36:22,105 | INFO     | mean x: 1764083773.259463
[2025-11-26 04:37:05] 2025-11-26 03:36:22,105 | INFO     | mean y: 2830987.7770130765
[2025-11-26 04:37:05] 2025-11-26 03:36:22,105 | INFO     | intersect: -7899259040.541646
[2025-11-26 04:37:05] 2025-11-26 03:36:22,107 | INFO     | chi2: 29.6900213059131
[2025-11-26 04:37:05] 2025-11-26 03:36:22,109 | INFO     | sum of square deviations: 941426414625.2247
[2025-11-26 04:37:05] 2025-11-26 03:36:22,165 | INFO     | sum of deviations: 4744265339144.651
[2025-11-26 04:37:05] 2025-11-26 03:36:22,166 | INFO     | mean x: 1764083620.763812
[2025-11-26 04:37:05] 2025-11-26 03:36:22,166 | INFO     | mean y: 2838519.642265193
[2025-11-26 04:37:05] 2025-11-26 03:36:22,166 | INFO     | intersect: -8887161428.653538
[2025-11-26 04:37:05] 2025-11-26 03:36:22,168 | INFO     | chi2: 26.497093923160175
[2025-11-26 04:37:05] 2025-11-26 03:36:22,168 | INFO     | current chi2=26.497093923160175 (change=10.75421047985916 %)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,168 | INFO     | right removable region: 1447
[2025-11-26 04:37:05] 2025-11-26 03:36:22,170 | INFO     | sum of square deviations: 941425298325.2229
[2025-11-26 04:37:05] 2025-11-26 03:36:22,234 | INFO     | sum of deviations: 3642291741700.0186
[2025-11-26 04:37:05] 2025-11-26 03:36:22,235 | INFO     | mean x: 1764083925.763812
[2025-11-26 04:37:05] 2025-11-26 03:36:22,235 | INFO     | mean y: 2840627.099447514
[2025-11-26 04:37:05] 2025-11-26 03:36:22,235 | INFO     | intersect: -6822245044.494229
[2025-11-26 04:37:05] 2025-11-26 03:36:22,237 | INFO     | chi2: 24.62545122276514
[2025-11-26 04:37:05] 2025-11-26 03:36:22,237 | INFO     | current chi2=24.62545122276514 (change=17.058155772152624 %)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,237 | INFO     | left removable region: 10
[2025-11-26 04:37:05] 2025-11-26 03:36:22,239 | INFO     | sum of square deviations: 920132940013.5216
[2025-11-26 04:37:05] 2025-11-26 03:36:22,302 | INFO     | sum of deviations: 3670820321547.7275
[2025-11-26 04:37:05] 2025-11-26 03:36:22,302 | INFO     | mean x: 1764083895.2734864
[2025-11-26 04:37:05] 2025-11-26 03:36:22,302 | INFO     | mean y: 2858933.8378566457
[2025-11-26 04:37:05] 2025-11-26 03:36:22,302 | INFO     | intersect: -7034857824.340398
[2025-11-26 04:37:05] 2025-11-26 03:36:22,304 | INFO     | chi2: 16.41704649302735
[2025-11-26 04:37:05] 2025-11-26 03:36:22,304 | INFO     | current memory leak: 3.99 B/s (using 1437 data points, chi2=16.42)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | ..............................
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | . Timing measurements:
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | . get job = 0 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | . initial setup = 13 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,306 | INFO     | . payload setup = 203 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,307 | INFO     | . stage-in = 0 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,307 | INFO     | . payload execution = 88753 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,307 | INFO     | . stage-out = 5 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,307 | INFO     | . log creation = 2 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,307 | INFO     | ..............................
[2025-11-26 04:37:05] 2025-11-26 03:36:22,349 | INFO     | time since job start (89284s) is within the limit (172800.0s)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | 
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | job summary report
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | --------------------------------------------------
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | PanDA job id: 6894292410
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | task id: 47533967
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | errors: (none)
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:37:05] 2025-11-26 03:36:22,437 | INFO     | pilot state: finished 
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | transexitcode: 0
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | exeerrorcode: 0
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | exeerrordiag: 
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | exitcode: 0
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | exitmsg: OK
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | cpuconsumptiontime: 340494 s
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | nevents: 1000
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | neventsw: 0
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | pid: 1496
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | pgrp: 1496
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | corecount: 8
[2025-11-26 04:37:05] 2025-11-26 03:36:22,438 | INFO     | event service: False
[2025-11-26 04:37:05] 2025-11-26 03:36:22,439 | INFO     | sizes: {0: 2283431, 1: 2284117, 2: 2284316, 13: 2284316, 23: 2284372, 34: 2284400, 45: 2284556, 56: 2284584, 66: 2284612, 77: 2284640, 88: 2284696, 99: 2285004, 10
[2025-11-26 04:37:05] 2025-11-26 03:36:22,439 | INFO     | --------------------------------------------------
[2025-11-26 04:37:05] 2025-11-26 03:36:22,439 | INFO     | 
[2025-11-26 04:37:05] 2025-11-26 03:36:22,439 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-26 04:37:05] 2025-11-26 03:36:23,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,011 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,011 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:37:05] 2025-11-26 03:36:23,013 | INFO     | job 6894292410 has completed (purged errors)
[2025-11-26 04:37:05] 2025-11-26 03:36:23,014 | INFO     | overall cleanup function is called
[2025-11-26 04:37:05] 2025-11-26 03:36:24,038 | INFO     | --- collectZombieJob: --- 10, [1496]
[2025-11-26 04:37:05] 2025-11-26 03:36:24,039 | INFO     | zombie collector waiting for pid 1496
[2025-11-26 04:37:05] 2025-11-26 03:36:24,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:37:05] 2025-11-26 03:36:24,039 | INFO     | collected zombie processes
[2025-11-26 04:37:05] 2025-11-26 03:36:24,039 | INFO     | will attempt to kill all subprocesses of pid=1496
[2025-11-26 04:37:05] 2025-11-26 03:36:24,139 | INFO     | process IDs to be killed: [1496] (in reverse order)
[2025-11-26 04:37:05] 2025-11-26 03:36:25,058 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:37:05] 2025-11-26 03:36:25,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:37:05] 2025-11-26 03:36:25,061 | INFO     | did not find any defunct processes belonging to 1496
[2025-11-26 04:37:05] 2025-11-26 03:36:25,064 | INFO     | did not find any defunct processes belonging to 1496
[2025-11-26 04:37:05] 2025-11-26 03:36:25,103 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:37:05] 2025-11-26 03:36:25,103 | INFO     | ready for new job
[2025-11-26 04:37:05] 2025-11-26 03:36:25,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:37:05] 2025-11-26 03:36:25,109 | INFO     | ***************************************
[2025-11-26 04:37:05] 2025-11-26 03:36:25,109 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:37:05] 2025-11-26 03:36:25,109 | INFO     | ***************************************
[2025-11-26 04:37:05] 2025-11-26 03:36:25,109 | INFO     | 
[2025-11-26 04:37:05] 2025-11-26 03:36:25,109 | INFO     | pilot is running in a VM
[2025-11-26 04:37:05] 2025-11-26 03:36:25,110 | INFO     | architecture information:
[2025-11-26 04:37:05] 2025-11-26 03:36:25,119 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:37:05] 2025-11-26 03:36:25,304 | INFO     | cat /etc/os-release:
[2025-11-26 04:37:05] NAME="CentOS Linux"
[2025-11-26 04:37:05] VERSION="7 (Core)"
[2025-11-26 04:37:05] ID="centos"
[2025-11-26 04:37:05] ID_LIKE="rhel fedora"
[2025-11-26 04:37:05] VERSION_ID="7"
[2025-11-26 04:37:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:37:05] ANSI_COLOR="0;31"
[2025-11-26 04:37:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:37:05] HOME_URL="https://www.centos.org/"
[2025-11-26 04:37:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:37:05] 
[2025-11-26 04:37:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:37:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:37:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:37:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:37:05] 
[2025-11-26 04:37:05] 2025-11-26 03:36:25,304 | INFO     | ***************************************
[2025-11-26 04:37:05] 2025-11-26 03:36:25,808 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-26 04:37:05] 2025-11-26 03:36:26,087 | INFO     | sufficient remaining disk space (495779315712 B)
[2025-11-26 04:37:05] 2025-11-26 03:36:26,088 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:37:05] 2025-11-26 03:36:26,088 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:37:05] 2025-11-26 03:36:26,088 | INFO     | update_server=False
[2025-11-26 04:37:05] 2025-11-26 03:36:26,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:37:05] 2025-11-26 03:36:26,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:37:05] 2025-11-26 03:36:26,464 | INFO     | all job control threads have been joined
[2025-11-26 04:37:05] 2025-11-26 03:36:26,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:37:05] 2025-11-26 03:36:26,513 | INFO     | aborting loop
[2025-11-26 04:37:05] 2025-11-26 03:36:26,660 | INFO     | all payload control threads have been joined
[2025-11-26 04:37:05] 2025-11-26 03:36:26,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:37:05] 2025-11-26 03:36:26,879 | INFO     | all data control threads have been joined
[2025-11-26 04:37:05] 2025-11-26 03:36:27,094 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,120 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:37:05] 2025-11-26 03:36:27,470 | INFO     | [job] control thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,519 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,667 | INFO     | [payload] control thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,885 | INFO     | [data] control thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,896 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:27,910 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,112 | INFO     | [job] validate thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,280 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,377 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,388 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,457 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:28,824 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:30,096 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:37:05] 2025-11-26 03:36:54,067 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:37:05] 2025-11-26 03:36:55,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140711189075776)>', '<ExcThread(monitor, started 140710745454336)>']
[2025-11-26 04:37:05] 2025-11-26 03:36:55,533 | INFO     | PID=27419 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 04:37:05] 2025-11-26 03:36:55,534 | INFO     | .. there are 9 such processes running
[2025-11-26 04:37:05] 2025-11-26 03:36:55,534 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:37:05] 2025-11-26 03:36:55,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:37:05] 2025-11-26 03:36:55,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:37:05] 2025-11-26 03:36:55,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:37:05] 2025-11-26 03:36:55,535 | INFO     | [monitor] control thread has ended
[2025-11-26 04:37:05] 2025-11-26 03:37:00,265 | INFO     | all workflow threads have been joined
[2025-11-26 04:37:05] 2025-11-26 03:37:00,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:37:05] 2025-11-26 03:37:00,266 | INFO     | traces error code: 0
[2025-11-26 04:37:05] 2025-11-26 03:37:00,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:37:05] 2025-11-26 03:37:00,534 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:37:05] 2025-11-26 03:37:00,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:37:05] 2025-11-26 03:37:00,660 [wrapper] pilotpid: 27419
[2025-11-26 04:37:05] 2025-11-26 03:37:00,771 [wrapper] Pilot exit status: 0
[2025-11-26 04:37:05] 2025-11-26 03:37:01,181 [wrapper] pandaids: 6894292410
[2025-11-26 04:37:05] 2025-11-26 03:37:01,761 [wrapper] cleanup supervisor_pilot 25238 27420
[2025-11-26 04:37:05] 2025-11-26 03:37:01,866 [wrapper] Test setup, not cleaning
[2025-11-26 04:37:05] 2025-11-26 03:37:01,975 [wrapper] apfmon messages muted
[2025-11-26 04:37:05] 2025-11-26 03:37:02,032 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:37:05] 2025-11-26 03:37:02,149 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:37:05]  *** Error codes and diagnostics ***
[2025-11-26 04:37:05]     "exeErrorCode": 0,
[2025-11-26 04:37:05]     "exeErrorDiag": "",
[2025-11-26 04:37:05]     "pilotErrorCode": 0,
[2025-11-26 04:37:05]     "pilotErrorDiag": "",
[2025-11-26 04:37:05]  *** Listing of results directory ***
[2025-11-26 04:37:05] total 1322516
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc    576529 Nov 21 13:22 pilot3.tar.gz
[2025-11-26 04:37:05] -rwx------. 1 boinc boinc     36292 Nov 21 13:27 runpilot2-wrapper.sh
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc      5112 Nov 21 13:27 queuedata.json
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc       100 Nov 25 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:37:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 03:42 run_atlas
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc       105 Nov 25 03:42 job.xml
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc 408539625 Nov 25 03:42 EVNT.47493127._002452.pool.root.1
[2025-11-26 04:37:05] drwxrwx--x. 2 boinc boinc        68 Nov 25 03:42 shared
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc    590102 Nov 25 03:42 input.tar.gz
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc      6393 Nov 25 03:42 init_data.xml
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 03:42 start_atlas.sh
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc         0 Nov 25 03:42 boinc_lockfile
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc      2785 Nov 25 03:43 pandaJob.out
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc    991801 Nov 25 03:48 agis_schedconf.cvmfs.json
[2025-11-26 04:37:05] drwx------. 5 boinc boinc      4096 Nov 25 03:48 pilot3
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc       533 Nov 26 04:13 boinc_task_state.xml
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc 912830971 Nov 26 04:33 HITS.47533967._004235.pool.root.1
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc      1033 Nov 26 04:34 memory_monitor_summary.json
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc   1516240 Nov 26 04:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc   2543432 Nov 26 04:34 log.47533967._004235.job.log.tgz.1
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc      8644 Nov 26 04:36 heartbeat.json
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc      8192 Nov 26 04:36 boinc_mmap_file
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc        29 Nov 26 04:36 wrapper_checkpoint.txt
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc        95 Nov 26 04:36 pilot_heartbeat.json
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc      4885 Nov 26 04:37 pilotlog.txt
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc  11943557 Nov 26 04:37 log.47533967._004235.job.log.1
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc       353 Nov 26 04:37 output.list
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc       620 Nov 26 04:37 runtime_log
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc  14510080 Nov 26 04:37 result.tar.gz
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc      8833 Nov 26 04:37 runtime_log.err
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc       662 Nov 26 04:37 oqQMDmdPfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLQJKDm6gUOZn.diag
[2025-11-26 04:37:05] -rw-r--r--. 1 boinc boinc     21494 Nov 26 04:37 stderr.txt
[2025-11-26 04:37:05] HITS file was successfully produced:
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc 912830971 Nov 26 04:33 shared/HITS.pool.root.1
[2025-11-26 04:37:05]  *** Contents of shared directory: ***
[2025-11-26 04:37:05] total 1305176
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc 408539625 Nov 25 03:42 ATLAS.root_0
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc    590102 Nov 25 03:42 input.tar.gz
[2025-11-26 04:37:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 03:42 start_atlas.sh
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc 912830971 Nov 26 04:33 HITS.pool.root.1
[2025-11-26 04:37:05] -rw-------. 1 boinc boinc  14510080 Nov 26 04:37 result.tar.gz
04:37:06 (23687): run_atlas exited; CPU time 341020.987617
04:37:06 (23687): called boinc_finish(0)

</stderr_txt>
]]>

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