Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:58:16 (14930): wrapper (7.7.26015): starting
22:58:16 (14930): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:58:16] Arguments: --nthreads 8
[2025-11-24 22:58:16] Threads: 8
[2025-11-24 22:58:16] Checking for CVMFS
[2025-11-24 22:58:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:58:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:58:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:58:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:58:19] 2.11.2.0 16343 282898 135896 153259 3 85 16729312 25165825 4632 130560 14 139857501 99.871 76447744 2683 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:58:19] CVMFS is ok
[2025-11-24 22:58:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:58:19] Checking for apptainer binary...
[2025-11-24 22:58:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:58:19] Running /usr/bin/apptainer --version
[2025-11-24 22:58:19] apptainer version 1.3.2-1.el7
[2025-11-24 22:58:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:58:28] cg-vwn436.simple-grid.lan
[2025-11-24 22:58:28] apptainer works
[2025-11-24 22:58:29] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:58:29] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:58:29] Starting ATLAS job with PandaID=6894292407
[2025-11-24 22:58:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:20:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:20:07] 2025-11-25 23:19:23,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:20:07] 2025-11-25 23:19:24,262 | INFO     | time since job start (91033s) is within the limit (172800.0s)
[2025-11-26 00:20:07] 2025-11-25 23:19:25,768 | INFO     | monitor loop #6108: job 0:6894292407 is in state 'finished'
[2025-11-26 00:20:07] 2025-11-25 23:19:25,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:20:07] 2025-11-25 23:19:26,269 | INFO     | time since job start (91035s) is within the limit (172800.0s)
[2025-11-26 00:20:07] 2025-11-25 23:19:28,277 | INFO     | monitor loop #6109: job 0:6894292407 is in state 'finished'
[2025-11-26 00:20:07] 2025-11-25 23:19:28,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:20:07] 2025-11-25 23:19:28,283 | INFO     | time since job start (91037s) is within the limit (172800.0s)
[2025-11-26 00:20:07] 2025-11-25 23:19:30,294 | INFO     | time since job start (91039s) is within the limit (172800.0s)
[2025-11-26 00:20:07] 2025-11-25 23:19:30,787 | INFO     | monitor loop #6110: job 0:6894292407 is in state 'finished'
[2025-11-26 00:20:07] 2025-11-25 23:19:30,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:20:07] 2025-11-25 23:19:31,506 | INFO     | PID=18759 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 00:20:07] 2025-11-25 23:19:31,506 | INFO     | .. there are 9 such processes running
[2025-11-26 00:20:07] 2025-11-25 23:19:32,512 | INFO     | time since job start (91041s) is within the limit (172800.0s)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,293 | INFO     | monitor loop #6111: job 0:6894292407 is in state 'finished'
[2025-11-26 00:20:07] 2025-11-25 23:19:33,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,446 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:20:07] 2025-11-25 23:19:33,447 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 00:20:07] 2025-11-25 23:19:33,449 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894292407/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,449 | INFO     | extracted standard info from prmon json
[2025-11-26 00:20:07] 2025-11-25 23:19:33,450 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:20:07] 2025-11-25 23:19:33,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:20:07] 2025-11-25 23:19:33,501 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:20:07] 2025-11-25 23:19:33,504 | INFO     | sum of square deviations: 1011351290221.058
[2025-11-26 00:20:07] 2025-11-25 23:19:33,562 | INFO     | sum of deviations: 3730807629674.3525
[2025-11-26 00:20:07] 2025-11-25 23:19:33,563 | INFO     | mean x: 1764067450.3027647
[2025-11-26 00:20:07] 2025-11-25 23:19:33,563 | INFO     | mean y: 2840119.6183412
[2025-11-26 00:20:07] 2025-11-25 23:19:33,563 | INFO     | intersect: -6504687350.298857
[2025-11-26 00:20:07] 2025-11-25 23:19:33,565 | INFO     | chi2: 25.374295910575906
[2025-11-26 00:20:07] 2025-11-25 23:19:33,567 | INFO     | sum of square deviations: 1001156888320.0437
[2025-11-26 00:20:07] 2025-11-25 23:19:33,629 | INFO     | sum of deviations: 4209400950250.384
[2025-11-26 00:20:07] 2025-11-25 23:19:33,633 | INFO     | mean x: 1764067297.8071718
[2025-11-26 00:20:07] 2025-11-25 23:19:33,634 | INFO     | mean y: 2847277.548714479
[2025-11-26 00:20:07] 2025-11-25 23:19:33,634 | INFO     | intersect: -7414238542.1928005
[2025-11-26 00:20:07] 2025-11-25 23:19:33,636 | INFO     | chi2: 22.307565142780135
[2025-11-26 00:20:07] 2025-11-25 23:19:33,636 | INFO     | current chi2=22.307565142780135 (change=12.085973847721899 %)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,636 | INFO     | right removable region: 1477
[2025-11-26 00:20:07] 2025-11-25 23:19:33,638 | INFO     | sum of square deviations: 1001155709800.0443
[2025-11-26 00:20:07] 2025-11-25 23:19:33,702 | INFO     | sum of deviations: 3119963515983.6133
[2025-11-26 00:20:07] 2025-11-25 23:19:33,703 | INFO     | mean x: 1764067602.8071718
[2025-11-26 00:20:07] 2025-11-25 23:19:33,703 | INFO     | mean y: 2849255.847767253
[2025-11-26 00:20:07] 2025-11-25 23:19:33,703 | INFO     | intersect: -5494623821.128739
[2025-11-26 00:20:07] 2025-11-25 23:19:33,705 | INFO     | chi2: 20.797706236988763
[2025-11-26 00:20:07] 2025-11-25 23:19:33,705 | INFO     | current chi2=20.797706236988763 (change=18.036321834174082 %)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,705 | INFO     | left removable region: 10
[2025-11-26 00:20:07] 2025-11-25 23:19:33,707 | INFO     | sum of square deviations: 978968503721.6068
[2025-11-26 00:20:07] 2025-11-25 23:19:33,786 | INFO     | sum of deviations: 3162444742363.7563
[2025-11-26 00:20:07] 2025-11-25 23:19:33,786 | INFO     | mean x: 1764067572.3169734
[2025-11-26 00:20:07] 2025-11-25 23:19:33,787 | INFO     | mean y: 2866145.5316973417
[2025-11-26 00:20:07] 2025-11-25 23:19:33,787 | INFO     | intersect: -5695750508.671371
[2025-11-26 00:20:07] 2025-11-25 23:19:33,789 | INFO     | chi2: 13.578818956592755
[2025-11-26 00:20:07] 2025-11-25 23:19:33,789 | INFO     | current memory leak: 3.23 B/s (using 1467 data points, chi2=13.58)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,792 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,792 | INFO     | ..............................
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . Timing measurements:
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . get job = 0 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . initial setup = 4 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . payload setup = 162 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . stage-in = 0 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . payload execution = 90586 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . stage-out = 8 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | . log creation = 2 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,793 | INFO     | ..............................
[2025-11-26 00:20:07] 2025-11-25 23:19:33,987 | INFO     | 
[2025-11-26 00:20:07] 2025-11-25 23:19:33,987 | INFO     | job summary report
[2025-11-26 00:20:07] 2025-11-25 23:19:33,987 | INFO     | --------------------------------------------------
[2025-11-26 00:20:07] 2025-11-25 23:19:33,987 | INFO     | PanDA job id: 6894292407
[2025-11-26 00:20:07] 2025-11-25 23:19:33,987 | INFO     | task id: 47533967
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | errors: (none)
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | pilot state: finished 
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | transexitcode: 0
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | exeerrorcode: 0
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | exeerrordiag: 
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | exitcode: 0
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | exitmsg: OK
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | cpuconsumptiontime: 338629 s
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | nevents: 1000
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | neventsw: 0
[2025-11-26 00:20:07] 2025-11-25 23:19:33,988 | INFO     | pid: 25342
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | pgrp: 25342
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | corecount: 8
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | event service: False
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | sizes: {0: 2284032, 1: 2284287, 2: 2284287, 12: 2284315, 23: 2284343, 34: 2284371, 44: 2284527, 55: 2284555, 66: 2284583, 77: 2284611, 87: 2284667, 91: 2285237, 98
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | --------------------------------------------------
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | 
[2025-11-26 00:20:07] 2025-11-25 23:19:33,989 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 00:20:07] 2025-11-25 23:19:34,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,502 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:20:07] 2025-11-25 23:19:34,503 | INFO     | job 6894292407 has completed (purged errors)
[2025-11-26 00:20:07] 2025-11-25 23:19:34,503 | INFO     | overall cleanup function is called
[2025-11-26 00:20:07] 2025-11-25 23:19:35,527 | INFO     | --- collectZombieJob: --- 10, [25342]
[2025-11-26 00:20:07] 2025-11-25 23:19:35,527 | INFO     | zombie collector waiting for pid 25342
[2025-11-26 00:20:07] 2025-11-25 23:19:35,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:20:07] 2025-11-25 23:19:35,527 | INFO     | collected zombie processes
[2025-11-26 00:20:07] 2025-11-25 23:19:35,528 | INFO     | will attempt to kill all subprocesses of pid=25342
[2025-11-26 00:20:07] 2025-11-25 23:19:35,632 | INFO     | process IDs to be killed: [25342] (in reverse order)
[2025-11-26 00:20:07] 2025-11-25 23:19:36,565 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:20:07] 2025-11-25 23:19:36,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:20:07] 2025-11-25 23:19:36,569 | INFO     | did not find any defunct processes belonging to 25342
[2025-11-26 00:20:07] 2025-11-25 23:19:36,572 | INFO     | did not find any defunct processes belonging to 25342
[2025-11-26 00:20:07] 2025-11-25 23:19:36,634 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:20:07] 2025-11-25 23:19:36,635 | INFO     | ready for new job
[2025-11-26 00:20:07] 2025-11-25 23:19:36,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:20:07] 2025-11-25 23:19:36,641 | INFO     | ***************************************
[2025-11-26 00:20:07] 2025-11-25 23:19:36,642 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:20:07] 2025-11-25 23:19:36,642 | INFO     | ***************************************
[2025-11-26 00:20:07] 2025-11-25 23:19:36,642 | INFO     | 
[2025-11-26 00:20:07] 2025-11-25 23:19:36,643 | INFO     | pilot is running in a VM
[2025-11-26 00:20:07] 2025-11-25 23:19:36,643 | INFO     | architecture information:
[2025-11-26 00:20:07] 2025-11-25 23:19:36,655 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:20:07] 2025-11-25 23:19:36,941 | INFO     | cat /etc/os-release:
[2025-11-26 00:20:07] NAME="CentOS Linux"
[2025-11-26 00:20:07] VERSION="7 (Core)"
[2025-11-26 00:20:07] ID="centos"
[2025-11-26 00:20:07] ID_LIKE="rhel fedora"
[2025-11-26 00:20:07] VERSION_ID="7"
[2025-11-26 00:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:20:07] ANSI_COLOR="0;31"
[2025-11-26 00:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:20:07] HOME_URL="https://www.centos.org/"
[2025-11-26 00:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:20:07] 
[2025-11-26 00:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:20:07] 
[2025-11-26 00:20:07] 2025-11-25 23:19:36,942 | INFO     | ***************************************
[2025-11-26 00:20:07] 2025-11-25 23:19:37,445 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 00:20:07] 2025-11-25 23:19:37,587 | INFO     | sufficient remaining disk space (495107178496 B)
[2025-11-26 00:20:07] 2025-11-25 23:19:37,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:20:07] 2025-11-25 23:19:37,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:20:07] 2025-11-25 23:19:37,587 | INFO     | update_server=False
[2025-11-26 00:20:07] 2025-11-25 23:19:37,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:20:07] 2025-11-25 23:19:37,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:20:07] 2025-11-25 23:19:37,588 | INFO     | aborting loop
[2025-11-26 00:20:07] 2025-11-25 23:19:37,893 | INFO     | all data control threads have been joined
[2025-11-26 00:20:07] 2025-11-25 23:19:38,004 | INFO     | all payload control threads have been joined
[2025-11-26 00:20:07] 2025-11-25 23:19:38,228 | INFO     | all job control threads have been joined
[2025-11-26 00:20:07] 2025-11-25 23:19:38,593 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:38,597 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:38,707 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:38,761 | INFO     | [job] validate thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:38,899 | INFO     | [data] control thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:38,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:20:07] 2025-11-25 23:19:39,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:20:07] 2025-11-25 23:19:39,010 | INFO     | [payload] control thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,233 | INFO     | [job] control thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:20:07] 2025-11-25 23:19:39,330 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,429 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,599 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,601 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:39,746 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:40,014 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:40,049 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:40,942 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:43,279 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:20:07] 2025-11-25 23:19:49,036 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:20:07] 2025-11-25 23:19:50,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399962347328)>', '<ExcThread(monitor, started 140399377110784)>']
[2025-11-26 00:20:07] 2025-11-25 23:19:55,793 | INFO     | all workflow threads have been joined
[2025-11-26 00:20:07] 2025-11-25 23:19:55,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:20:07] 2025-11-25 23:19:55,794 | INFO     | traces error code: 0
[2025-11-26 00:20:07] 2025-11-25 23:19:55,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:20:07] 2025-11-25 23:20:05,743 | INFO     | PID=18759 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 00:20:07] 2025-11-25 23:20:05,744 | INFO     | .. there are 9 such processes running
[2025-11-26 00:20:07] 2025-11-25 23:20:05,744 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:20:07] 2025-11-25 23:20:05,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:20:07] 2025-11-25 23:20:05,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:20:07] 2025-11-25 23:20:05,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:20:07] 2025-11-25 23:20:05,745 | INFO     | [monitor] control thread has ended
[2025-11-26 00:20:07] 2025-11-25 23:20:06,134 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:20:07] 2025-11-25 23:20:06,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:20:07] 2025-11-25 23:20:06,349 [wrapper] pilotpid: 18759
[2025-11-26 00:20:07] 2025-11-25 23:20:06,394 [wrapper] Pilot exit status: 0
[2025-11-26 00:20:07] 2025-11-25 23:20:06,621 [wrapper] pandaids: 6894292407
[2025-11-26 00:20:07] 2025-11-25 23:20:06,883 [wrapper] cleanup supervisor_pilot 30368 18760
[2025-11-26 00:20:07] 2025-11-25 23:20:06,985 [wrapper] Test setup, not cleaning
[2025-11-26 00:20:07] 2025-11-25 23:20:07,058 [wrapper] apfmon messages muted
[2025-11-26 00:20:07] 2025-11-25 23:20:07,166 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:20:07] 2025-11-25 23:20:07,226 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:20:07]  *** Error codes and diagnostics ***
[2025-11-26 00:20:07]     "exeErrorCode": 0,
[2025-11-26 00:20:07]     "exeErrorDiag": "",
[2025-11-26 00:20:07]     "pilotErrorCode": 0,
[2025-11-26 00:20:07]     "pilotErrorDiag": "",
[2025-11-26 00:20:07]  *** Listing of results directory ***
[2025-11-26 00:20:07] total 1324252
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc    576529 Nov 21 13:22 pilot3.tar.gz
[2025-11-26 00:20:07] -rwx------. 1 boinc boinc     36292 Nov 21 13:27 runpilot2-wrapper.sh
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc      5112 Nov 21 13:27 queuedata.json
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:20:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:58 run_atlas
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:58 job.xml
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc 408539625 Nov 24 22:58 EVNT.47493127._002452.pool.root.1
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc      6390 Nov 24 22:58 init_data.xml
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:58 start_atlas.sh
[2025-11-26 00:20:07] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:58 shared
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc    590105 Nov 24 22:58 input.tar.gz
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:58 boinc_lockfile
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc      2785 Nov 24 22:58 pandaJob.out
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc    991801 Nov 24 23:02 agis_schedconf.cvmfs.json
[2025-11-26 00:20:07] drwx------. 5 boinc boinc      4096 Nov 24 23:02 pilot3
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc       533 Nov 25 23:53 boinc_task_state.xml
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc 914180552 Nov 26 00:16 HITS.47533967._004232.pool.root.1
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc      1030 Nov 26 00:17 memory_monitor_summary.json
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc   1516240 Nov 26 00:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc   2564643 Nov 26 00:17 log.47533967._004232.job.log.tgz.1
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc        95 Nov 26 00:19 pilot_heartbeat.json
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc      8627 Nov 26 00:19 heartbeat.json
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc        29 Nov 26 00:19 wrapper_checkpoint.txt
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc      8192 Nov 26 00:19 boinc_mmap_file
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc       820 Nov 26 00:20 pilotlog.txt
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc  12137546 Nov 26 00:20 log.47533967._004232.job.log.1
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc       353 Nov 26 00:20 output.list
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc       620 Nov 26 00:20 runtime_log
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc  14725120 Nov 26 00:20 result.tar.gz
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc       662 Nov 26 00:20 SQNMDmdPfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIQJKDmoR2Hem.diag
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc      8817 Nov 26 00:20 runtime_log.err
[2025-11-26 00:20:07] -rw-r--r--. 1 boinc boinc     21527 Nov 26 00:20 stderr.txt
[2025-11-26 00:20:07] HITS file was successfully produced:
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc 914180552 Nov 26 00:16 shared/HITS.pool.root.1
[2025-11-26 00:20:07]  *** Contents of shared directory: ***
[2025-11-26 00:20:07] total 1306700
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc 408539625 Nov 24 22:58 ATLAS.root_0
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:58 start_atlas.sh
[2025-11-26 00:20:07] -rw-r--r--. 2 boinc boinc    590105 Nov 24 22:58 input.tar.gz
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc 914180552 Nov 26 00:16 HITS.pool.root.1
[2025-11-26 00:20:07] -rw-------. 1 boinc boinc  14725120 Nov 26 00:20 result.tar.gz
00:20:09 (14930): run_atlas exited; CPU time 339142.079470
00:20:09 (14930): called boinc_finish(0)

</stderr_txt>
]]>

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