Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:31:19 (764229): wrapper (7.7.26015): starting
04:31:19 (764229): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 04:31:19] Arguments: --nthreads 8
[2025-11-22 04:31:19] Threads: 8
[2025-11-22 04:31:19] Checking for CVMFS
[2025-11-22 04:31:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:31:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:31:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:31:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:31:22] 2.13.2.0 1657905 24321 248852 153166 1 455 31436033 40960000 27071 16776704 0 317670707 99.711 220326405 46361 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 04:31:22] CVMFS is ok
[2025-11-22 04:31:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:31:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:31:22] Further information can be found at the LHC@home message board.
[2025-11-22 04:31:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:31:22] Checking for apptainer binary...
[2025-11-22 04:31:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 04:31:22] Running /usr/bin/apptainer --version
[2025-11-22 04:31:22] apptainer version 1.4.4-1.el9
[2025-11-22 04:31:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:31:23] c-208-39.aglt2.org
[2025-11-22 04:31:23] apptainer works
[2025-11-22 04:31:23] Set ATHENA_PROC_NUMBER=8
[2025-11-22 04:31:23] Set ATHENA_CORE_NUMBER=8
[2025-11-22 04:31:23] Starting ATLAS job with PandaID=6893881982
[2025-11-22 04:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:00:35]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:00:35] 2025-11-22 19:59:24,534 | INFO     | time since job start (37582s) is within the limit (172800.0s)
[2025-11-22 15:00:35] 2025-11-22 19:59:24,999 | INFO     | monitor loop #2257: job 0:6893881982 is in state 'finished'
[2025-11-22 15:00:35] 2025-11-22 19:59:24,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:00:35] 2025-11-22 19:59:26,936 | INFO     | PID=791084 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 15:00:35] 2025-11-22 19:59:26,937 | INFO     | .. there are 32 such processes running
[2025-11-22 15:00:35] 2025-11-22 19:59:27,504 | INFO     | monitor loop #2258: job 0:6893881982 is in state 'finished'
[2025-11-22 15:00:35] 2025-11-22 19:59:27,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:00:35] 2025-11-22 19:59:27,937 | INFO     | time since job start (37585s) is within the limit (172800.0s)
[2025-11-22 15:00:35] 2025-11-22 19:59:29,944 | INFO     | time since job start (37587s) is within the limit (172800.0s)
[2025-11-22 15:00:35] 2025-11-22 19:59:30,009 | INFO     | monitor loop #2259: job 0:6893881982 is in state 'finished'
[2025-11-22 15:00:35] 2025-11-22 19:59:30,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:00:35] 2025-11-22 19:59:31,951 | INFO     | time since job start (37589s) is within the limit (172800.0s)
[2025-11-22 15:00:35] 2025-11-22 19:59:32,514 | INFO     | monitor loop #2260: job 0:6893881982 is in state 'finished'
[2025-11-22 15:00:35] 2025-11-22 19:59:32,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:00:35] 2025-11-22 19:59:33,958 | INFO     | time since job start (37591s) is within the limit (172800.0s)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,439 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 15:00:35] 2025-11-22 19:59:34,447 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3759.80128125
[2025-11-22 15:00:35] 2025-11-22 19:59:34,472 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893881982/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,472 | INFO     | extracted standard info from prmon json
[2025-11-22 15:00:35] 2025-11-22 19:59:34,472 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:00:35] 2025-11-22 19:59:34,477 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:00:35] 2025-11-22 19:59:34,486 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:00:35] 2025-11-22 19:59:34,487 | INFO     | sum of square deviations: 71430421758.23508
[2025-11-22 15:00:35] 2025-11-22 19:59:34,494 | INFO     | sum of deviations: 254464827343.7231
[2025-11-22 15:00:35] 2025-11-22 19:59:34,494 | INFO     | mean x: 1763822834.314845
[2025-11-22 15:00:35] 2025-11-22 19:59:34,495 | INFO     | mean y: 2745412.975530179
[2025-11-22 15:00:35] 2025-11-22 19:59:34,495 | INFO     | intersect: -6280724038.149452
[2025-11-22 15:00:35] 2025-11-22 19:59:34,495 | INFO     | chi2: 27.422065234550526
[2025-11-22 15:00:35] 2025-11-22 19:59:34,495 | INFO     | sum of square deviations: 69697090889.51938
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | sum of deviations: 441233448534.74286
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | mean x: 1763822681.8256578
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | mean y: 2761837.0164473685
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | intersect: -11163522932.88007
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | chi2: 24.196925025097503
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | current chi2=24.196925025097503 (change=11.761113475105795 %)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,504 | INFO     | right removable region: 607
[2025-11-22 15:00:35] 2025-11-22 19:59:34,509 | INFO     | sum of square deviations: 69696599229.5194
[2025-11-22 15:00:35] 2025-11-22 19:59:34,517 | INFO     | sum of deviations: 3647498932.3132553
[2025-11-22 15:00:35] 2025-11-22 19:59:34,517 | INFO     | mean x: 1763822986.8256578
[2025-11-22 15:00:35] 2025-11-22 19:59:34,517 | INFO     | mean y: 2767473.53125
[2025-11-22 15:00:35] 2025-11-22 19:59:34,517 | INFO     | intersect: -89540365.47893935
[2025-11-22 15:00:35] 2025-11-22 19:59:34,518 | INFO     | chi2: 22.591569660796434
[2025-11-22 15:00:35] 2025-11-22 19:59:34,518 | INFO     | current chi2=22.591569660796434 (change=17.61536023066524 %)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,518 | INFO     | left removable region: 10
[2025-11-22 15:00:35] 2025-11-22 19:59:34,518 | INFO     | sum of square deviations: 65981996401.8327
[2025-11-22 15:00:35] 2025-11-22 19:59:34,526 | INFO     | sum of deviations: 10438817420.531242
[2025-11-22 15:00:35] 2025-11-22 19:59:34,527 | INFO     | mean x: 1763822956.3500838
[2025-11-22 15:00:35] 2025-11-22 19:59:34,527 | INFO     | mean y: 2807041.380234506
[2025-11-22 15:00:35] 2025-11-22 19:59:34,527 | INFO     | intersect: -276242196.40501016
[2025-11-22 15:00:35] 2025-11-22 19:59:34,527 | INFO     | chi2: 15.275933134174542
[2025-11-22 15:00:35] 2025-11-22 19:59:34,527 | INFO     | current memory leak: 0.16 B/s (using 597 data points, chi2=15.28)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | could have reported an average CPU frequency of 3732 MHz (24 samples)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | ..............................
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . Timing measurements:
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . get job = 0 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . initial setup = 5 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . payload setup = 57 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . stage-in = 0 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . payload execution = 37410 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . stage-out = 4 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | . log creation = 1 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,528 | INFO     | ..............................
[2025-11-22 15:00:35] 2025-11-22 19:59:34,634 | INFO     | 
[2025-11-22 15:00:35] 2025-11-22 19:59:34,634 | INFO     | job summary report
[2025-11-22 15:00:35] 2025-11-22 19:59:34,634 | INFO     | --------------------------------------------------
[2025-11-22 15:00:35] 2025-11-22 19:59:34,634 | INFO     | PanDA job id: 6893881982
[2025-11-22 15:00:35] 2025-11-22 19:59:34,634 | INFO     | task id: 47523449
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | errors: (none)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | pilot state: finished 
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | transexitcode: 0
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | exeerrorcode: 0
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | exeerrordiag: 
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | exitcode: 0
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | exitmsg: OK
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | cpuconsumptiontime: 139879 s
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | nevents: 1000
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | neventsw: 0
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | pid: 826651
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | pgrp: 826651
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | corecount: 8
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | event service: False
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | sizes: {0: 2298807, 1: 2298807, 12: 2298835, 23: 2298863, 33: 2298891, 35: 2299209, 44: 2299365, 37471: 2341388, 37472: 2341387, 37477: 2350493, 37502: 2350683}
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | --------------------------------------------------
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | 
[2025-11-22 15:00:35] 2025-11-22 19:59:34,635 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 15:00:35] 2025-11-22 19:59:34,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | job 6893881982 has completed (purged errors)
[2025-11-22 15:00:35] 2025-11-22 19:59:34,706 | INFO     | overall cleanup function is called
[2025-11-22 15:00:35] 2025-11-22 19:59:35,725 | INFO     | --- collectZombieJob: --- 10, [826651]
[2025-11-22 15:00:35] 2025-11-22 19:59:35,725 | INFO     | zombie collector waiting for pid 826651
[2025-11-22 15:00:35] 2025-11-22 19:59:35,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:00:35] 2025-11-22 19:59:35,725 | INFO     | collected zombie processes
[2025-11-22 15:00:35] 2025-11-22 19:59:35,725 | INFO     | will attempt to kill all subprocesses of pid=826651
[2025-11-22 15:00:35] 2025-11-22 19:59:36,229 | INFO     | process IDs to be killed: [826651] (in reverse order)
[2025-11-22 15:00:35] 2025-11-22 19:59:36,494 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:00:35] 2025-11-22 19:59:36,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:00:35] 2025-11-22 19:59:36,550 | INFO     | did not find any defunct processes belonging to 826651
[2025-11-22 15:00:35] 2025-11-22 19:59:36,628 | INFO     | did not find any defunct processes belonging to 826651
[2025-11-22 15:00:35] 2025-11-22 19:59:36,660 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:00:35] 2025-11-22 19:59:36,660 | INFO     | ready for new job
[2025-11-22 15:00:35] 2025-11-22 19:59:36,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:00:35] 2025-11-22 19:59:36,662 | INFO     | ***************************************
[2025-11-22 15:00:35] 2025-11-22 19:59:36,662 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:00:35] 2025-11-22 19:59:36,662 | INFO     | ***************************************
[2025-11-22 15:00:35] 2025-11-22 19:59:36,662 | INFO     | 
[2025-11-22 15:00:35] 2025-11-22 19:59:36,680 | INFO     | architecture information:
[2025-11-22 15:00:35] 2025-11-22 19:59:36,687 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:00:35] 2025-11-22 19:59:36,703 | INFO     | cat /etc/os-release:
[2025-11-22 15:00:35] NAME="CentOS Linux"
[2025-11-22 15:00:35] VERSION="7 (Core)"
[2025-11-22 15:00:35] ID="centos"
[2025-11-22 15:00:35] ID_LIKE="rhel fedora"
[2025-11-22 15:00:35] VERSION_ID="7"
[2025-11-22 15:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:00:35] ANSI_COLOR="0;31"
[2025-11-22 15:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:00:35] HOME_URL="https://www.centos.org/"
[2025-11-22 15:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:00:35] 
[2025-11-22 15:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:00:35] 
[2025-11-22 15:00:35] 2025-11-22 19:59:36,704 | INFO     | ***************************************
[2025-11-22 15:00:35] 2025-11-22 19:59:37,207 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 15:00:35] 2025-11-22 19:59:37,318 | INFO     | sufficient remaining disk space (162247213056 B)
[2025-11-22 15:00:35] 2025-11-22 19:59:37,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:00:35] 2025-11-22 19:59:37,318 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:00:35] 2025-11-22 19:59:37,318 | INFO     | update_server=False
[2025-11-22 15:00:35] 2025-11-22 19:59:37,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:00:35] 2025-11-22 19:59:37,551 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 15:00:35] 2025-11-22 19:59:37,551 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 15:00:35] 2025-11-22 19:59:37,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:00:35] 2025-11-22 19:59:37,551 | INFO     | will abort loop
[2025-11-22 15:00:35] 2025-11-22 19:59:37,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:00:35] 2025-11-22 19:59:37,710 | INFO     | all payload control threads have been joined
[2025-11-22 15:00:35] 2025-11-22 19:59:38,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:00:35] 2025-11-22 19:59:38,324 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,382 | INFO     | all data control threads have been joined
[2025-11-22 15:00:35] 2025-11-22 19:59:38,454 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,487 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,556 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,622 | INFO     | [job] validate thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,716 | INFO     | [payload] control thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,779 | INFO     | all job control threads have been joined
[2025-11-22 15:00:35] 2025-11-22 19:59:38,813 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:38,860 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:39,385 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:39,396 | INFO     | [data] control thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:39,558 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:39,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:00:35] 2025-11-22 19:59:39,784 | INFO     | [job] control thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:39,822 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:40,654 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:00:35] 2025-11-22 19:59:42,082 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:00:35] 2025-11-22 20:00:08,110 | INFO     | PID=791084 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 15:00:35] 2025-11-22 20:00:08,110 | INFO     | .. there are 32 such processes running
[2025-11-22 15:00:35] 2025-11-22 20:00:08,110 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:00:35] 2025-11-22 20:00:08,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:00:35] 2025-11-22 20:00:08,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:00:35] 2025-11-22 20:00:08,710 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:00:35] 2025-11-22 20:00:09,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140679343503168)>', '<ExcThread(monitor, started 140678768097024)>']
[2025-11-22 15:00:35] 2025-11-22 20:00:10,122 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:00:35] 2025-11-22 20:00:10,122 | INFO     | [monitor] control thread has ended
[2025-11-22 15:00:35] 2025-11-22 20:00:14,291 | INFO     | all workflow threads have been joined
[2025-11-22 15:00:35] 2025-11-22 20:00:14,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:00:35] 2025-11-22 20:00:14,291 | INFO     | traces error code: 0
[2025-11-22 15:00:35] 2025-11-22 20:00:14,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:00:35] 2025-11-22 20:00:14,805 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:00:35] 2025-11-22 20:00:14,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:00:35] 2025-11-22 20:00:14,853 [wrapper] pilotpid: 791084
[2025-11-22 15:00:35] 2025-11-22 20:00:14,882 [wrapper] Pilot exit status: 0
[2025-11-22 15:00:35] 2025-11-22 20:00:14,923 [wrapper] pandaids: 6893881982
[2025-11-22 15:00:35] 2025-11-22 20:00:15,206 [wrapper] cleanup supervisor_pilot 2095794 791085
[2025-11-22 15:00:35] 2025-11-22 20:00:15,226 [wrapper] Test setup, not cleaning
[2025-11-22 15:00:35] 2025-11-22 20:00:15,233 [wrapper] apfmon messages muted
[2025-11-22 15:00:35] 2025-11-22 20:00:15,256 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:00:35] 2025-11-22 20:00:15,281 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:00:35]  *** Error codes and diagnostics ***
[2025-11-22 15:00:35]     "exeErrorCode": 0,
[2025-11-22 15:00:35]     "exeErrorDiag": "",
[2025-11-22 15:00:35]     "pilotErrorCode": 0,
[2025-11-22 15:00:35]     "pilotErrorDiag": "",
[2025-11-22 15:00:35]  *** Listing of results directory ***
[2025-11-22 15:00:35] total 1318044
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-22 15:00:35] -rwx------. 1 boincer umatlas     36292 Nov 20 15:33 runpilot2-wrapper.sh
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 15:33 queuedata.json
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas       100 Nov 22 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:00:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 04:31 run_atlas
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas       105 Nov 22 04:31 job.xml
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas 410655749 Nov 22 04:31 EVNT.47493127._000885.pool.root.1
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 04:31 start_atlas.sh
[2025-11-22 15:00:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 04:31 shared
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 04:31 input.tar.gz
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas         0 Nov 22 04:31 boinc_lockfile
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 04:31 pandaJob.out
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas        57 Nov 22 04:31 setup.sh.local
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas    989768 Nov 22 04:32 agis_schedconf.cvmfs.json
[2025-11-22 15:00:35] drwx------. 5 boincer umatlas      4096 Nov 22 04:33 pilot3
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas       533 Nov 22 14:33 boinc_task_state.xml
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas      7175 Nov 22 14:55 init_data.xml
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas 921925751 Nov 22 14:57 HITS.47523449._008850.pool.root.1
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas      1075 Nov 22 14:59 memory_monitor_summary.json
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas   1526164 Nov 22 14:59 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas   1847167 Nov 22 14:59 log.47523449._008850.job.log.tgz.1
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas        95 Nov 22 14:59 pilot_heartbeat.json
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas      8642 Nov 22 14:59 heartbeat.json
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas      5010 Nov 22 15:00 pilotlog.txt
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas   4735947 Nov 22 15:00 log.47523449._008850.job.log.1
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas       353 Nov 22 15:00 output.list
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas       620 Nov 22 15:00 runtime_log
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas   6604800 Nov 22 15:00 result.tar.gz
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 15:00 runtime_log.err
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas       666 Nov 22 15:00 9dbLDmTWQg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmm4GKDmfDOYUn.diag
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas        29 Nov 22 15:00 wrapper_checkpoint.txt
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 15:00 boinc_mmap_file
[2025-11-22 15:00:35] -rw-r--r--. 1 boincer umatlas     21847 Nov 22 15:00 stderr.txt
[2025-11-22 15:00:35] HITS file was successfully produced:
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas 921925751 Nov 22 14:57 shared/HITS.pool.root.1
[2025-11-22 15:00:35]  *** Contents of shared directory: ***
[2025-11-22 15:00:35] total 1308408
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas 410655749 Nov 22 04:31 ATLAS.root_0
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 04:31 start_atlas.sh
[2025-11-22 15:00:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 22 04:31 input.tar.gz
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas 921925751 Nov 22 14:57 HITS.pool.root.1
[2025-11-22 15:00:35] -rw-------. 1 boincer umatlas   6604800 Nov 22 15:00 result.tar.gz
15:00:36 (764229): run_atlas exited; CPU time 140242.574132
15:00:36 (764229): called boinc_finish(0)

</stderr_txt>
]]>

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