Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:12 (2807): wrapper (7.7.26015): starting
21:27:12 (2807): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 21:27:12] Arguments: --nthreads 12
[2025-11-22 21:27:12] Threads: 12
[2025-11-22 21:27:12] Checking for CVMFS
[2025-11-22 21:27:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 21:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 21:27:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 21:27:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 21:27:12] 2.13.3.0 5957 1679 108296 153185 1 81 4745628 102400000 1740 130560 29 5467767 99.995 67225 11 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 21:27:12] CVMFS is ok
[2025-11-22 21:27:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 21:27:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 21:27:12] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 21:27:12] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 21:27:12] Further information can be found at the LHC@home message board.
[2025-11-22 21:27:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 21:27:12] Checking for apptainer binary...
[2025-11-22 21:27:12] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 21:27:12] apptainer is not installed, using version from CVMFS
[2025-11-22 21:27:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 21:27:13] crocidura-russula
[2025-11-22 21:27:13] apptainer works
[2025-11-22 21:27:13] Set ATHENA_PROC_NUMBER=12
[2025-11-22 21:27:13] Set ATHENA_CORE_NUMBER=12
[2025-11-22 21:27:13] Starting ATLAS job with PandaID=6894292075
[2025-11-22 21:27:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:18:53]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:18:53] 2025-11-23 01:18:09,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:18:53] 2025-11-23 01:18:09,915 | INFO     | time since job start (13848s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:11,020 | INFO     | PID=6746 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 01:18:53] 2025-11-23 01:18:11,020 | INFO     | .. there are 3 such processes running
[2025-11-23 01:18:53] 2025-11-23 01:18:12,021 | INFO     | time since job start (13851s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:12,038 | INFO     | monitor loop #1033: job 0:6894292075 is in state 'finished'
[2025-11-23 01:18:53] 2025-11-23 01:18:12,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:18:53] 2025-11-23 01:18:14,022 | INFO     | time since job start (13853s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:14,541 | INFO     | monitor loop #1034: job 0:6894292075 is in state 'finished'
[2025-11-23 01:18:53] 2025-11-23 01:18:14,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:18:53] 2025-11-23 01:18:16,026 | INFO     | time since job start (13855s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:17,044 | INFO     | monitor loop #1035: job 0:6894292075 is in state 'finished'
[2025-11-23 01:18:53] 2025-11-23 01:18:17,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:18:53] 2025-11-23 01:18:18,031 | INFO     | time since job start (13857s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:19,546 | INFO     | monitor loop #1036: job 0:6894292075 is in state 'finished'
[2025-11-23 01:18:53] 2025-11-23 01:18:19,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,037 | INFO     | time since job start (13859s) is within the limit (172800.0s)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,894 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:18:53] 2025-11-23 01:18:20,897 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3947.2283958333333
[2025-11-23 01:18:53] 2025-11-23 01:18:20,900 | INFO     | using path: /virtma/boinc/slots/2/PanDA_Pilot-6894292075/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,901 | INFO     | extracted standard info from prmon json
[2025-11-23 01:18:53] 2025-11-23 01:18:20,901 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:18:53] 2025-11-23 01:18:20,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:18:53] 2025-11-23 01:18:20,902 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:18:53] 2025-11-23 01:18:20,902 | INFO     | sum of square deviations: 3579276412.5
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | sum of deviations: 374541971214.9998
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | mean x: 1763853722.5
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | mean y: 2855544.0265486725
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | intersect: -184569994949.69464
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | chi2: 37.37511063021744
[2025-11-23 01:18:53] 2025-11-23 01:18:20,903 | INFO     | sum of square deviations: 3346927870.0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | sum of deviations: 447971062144.0001
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | mean x: 1763853570.0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | mean y: 2903752.5656108595
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | intersect: -236080868563.50357
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | chi2: 32.291615316956396
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | current chi2=32.291615316956396 (change=13.601284992989656 %)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | right removable region: 220
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | sum of square deviations: 3346927870.0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | sum of deviations: 296576749303.00006
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | mean x: 1763853875.0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | mean y: 2906669.619909502
[2025-11-23 01:18:53] 2025-11-23 01:18:20,904 | INFO     | intersect: -156295068312.73315
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | chi2: 34.001715954867414
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | current chi2=34.001715954867414 (change=9.025778435081524 %)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | left removable region: 10
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | sum of square deviations: 2871616632.5
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | sum of deviations: 311885907346.99994
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | mean x: 1763853844.5
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | mean y: 3020847.8857142855
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | intersect: -191568914797.45383
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | chi2: 25.39711783493763
[2025-11-23 01:18:53] 2025-11-23 01:18:20,905 | INFO     | current memory leak: 108.61 B/s (using 210 data points, chi2=25.40)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | could have reported an average CPU frequency of 4187 MHz (11 samples)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | ..............................
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . Timing measurements:
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . get job = 0 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . initial setup = 3 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . payload setup = 2 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . stage-in = 0 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . payload execution = 13784 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . stage-out = 11 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | . log creation = 0 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,906 | INFO     | ..............................
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | 
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | job summary report
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | --------------------------------------------------
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | PanDA job id: 6894292075
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | task id: 47533967
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | errors: (none)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | pilot state: finished 
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | transexitcode: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | exeerrorcode: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | exeerrordiag: 
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | exitcode: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | exitmsg: OK
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | cpuconsumptiontime: 122812 s
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | nevents: 1000
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | neventsw: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:20,935 | INFO     | pid: 13556
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | pgrp: 13556
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | corecount: 12
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | event service: False
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | sizes: {0: 2298521, 1: 2298776, 3: 2299038, 11: 2299066, 13790: 2330455, 13791: 2330454, 13803: 2339630, 13806: 2339686, 13847: 2339932}
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | --------------------------------------------------
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | 
[2025-11-23 01:18:53] 2025-11-23 01:18:20,936 | INFO     | executing command: ls -lF /virtma/boinc/slots/2
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | job 6894292075 has completed (purged errors)
[2025-11-23 01:18:53] 2025-11-23 01:18:20,949 | INFO     | overall cleanup function is called
[2025-11-23 01:18:53] 2025-11-23 01:18:21,963 | INFO     | --- collectZombieJob: --- 10, [13556]
[2025-11-23 01:18:53] 2025-11-23 01:18:21,963 | INFO     | zombie collector waiting for pid 13556
[2025-11-23 01:18:53] 2025-11-23 01:18:21,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:18:53] 2025-11-23 01:18:21,964 | INFO     | collected zombie processes
[2025-11-23 01:18:53] 2025-11-23 01:18:21,964 | INFO     | will attempt to kill all subprocesses of pid=13556
[2025-11-23 01:18:53] 2025-11-23 01:18:22,092 | INFO     | process IDs to be killed: [13556] (in reverse order)
[2025-11-23 01:18:53] 2025-11-23 01:18:22,133 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:18:53] 2025-11-23 01:18:22,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:18:53] 2025-11-23 01:18:22,136 | INFO     | did not find any defunct processes belonging to 13556
[2025-11-23 01:18:53] 2025-11-23 01:18:22,138 | INFO     | did not find any defunct processes belonging to 13556
[2025-11-23 01:18:53] 2025-11-23 01:18:22,138 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:18:53] 2025-11-23 01:18:22,138 | INFO     | ready for new job
[2025-11-23 01:18:53] 2025-11-23 01:18:22,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:18:53] 2025-11-23 01:18:22,139 | INFO     | ***************************************
[2025-11-23 01:18:53] 2025-11-23 01:18:22,139 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:18:53] 2025-11-23 01:18:22,139 | INFO     | ***************************************
[2025-11-23 01:18:53] 2025-11-23 01:18:22,139 | INFO     | 
[2025-11-23 01:18:53] 2025-11-23 01:18:22,141 | INFO     | architecture information:
[2025-11-23 01:18:53] 2025-11-23 01:18:22,141 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:18:53] 2025-11-23 01:18:22,149 | INFO     | cat /etc/os-release:
[2025-11-23 01:18:53] NAME="CentOS Linux"
[2025-11-23 01:18:53] VERSION="7 (Core)"
[2025-11-23 01:18:53] ID="centos"
[2025-11-23 01:18:53] ID_LIKE="rhel fedora"
[2025-11-23 01:18:53] VERSION_ID="7"
[2025-11-23 01:18:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:18:53] ANSI_COLOR="0;31"
[2025-11-23 01:18:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:18:53] HOME_URL="https://www.centos.org/"
[2025-11-23 01:18:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:18:53] 
[2025-11-23 01:18:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:18:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:18:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:18:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:18:53] 
[2025-11-23 01:18:53] 2025-11-23 01:18:22,149 | INFO     | ***************************************
[2025-11-23 01:18:53] 2025-11-23 01:18:22,652 | INFO     | executing command: df -mP /virtma/boinc/slots/2
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | INFO     | sufficient remaining disk space (961859813376 B)
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | INFO     | update_server=False
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:18:53] 2025-11-23 01:18:22,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:18:53] 2025-11-23 01:18:22,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:18:53] 2025-11-23 01:18:22,774 | INFO     | all job control threads have been joined
[2025-11-23 01:18:53] 2025-11-23 01:18:23,052 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:18:53] 2025-11-23 01:18:23,052 | INFO     | aborting loop
[2025-11-23 01:18:53] 2025-11-23 01:18:23,072 | INFO     | all data control threads have been joined
[2025-11-23 01:18:53] 2025-11-23 01:18:23,126 | INFO     | all payload control threads have been joined
[2025-11-23 01:18:53] 2025-11-23 01:18:23,666 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:23,668 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:23,775 | INFO     | [job] control thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:23,786 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:23,858 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,057 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,076 | INFO     | [data] control thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,130 | INFO     | [payload] control thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,243 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,541 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,562 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,718 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,854 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:24,894 | INFO     | [job] validate thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:26,668 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:18:53] 2025-11-23 01:18:42,342 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:18:53] 2025-11-23 01:18:42,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624448288576)>', '<ExcThread(monitor, started 140623898191616)>']
[2025-11-23 01:18:53] 2025-11-23 01:18:47,394 | INFO     | all workflow threads have been joined
[2025-11-23 01:18:53] 2025-11-23 01:18:47,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:18:53] 2025-11-23 01:18:47,394 | INFO     | traces error code: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:47,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:18:53] 2025-11-23 01:18:53,182 | INFO     | PID=6746 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 01:18:53] 2025-11-23 01:18:53,182 | INFO     | .. there are 3 such processes running
[2025-11-23 01:18:53] 2025-11-23 01:18:53,183 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:18:53] 2025-11-23 01:18:53,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:18:53] 2025-11-23 01:18:53,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:18:53] 2025-11-23 01:18:53,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:18:53] 2025-11-23 01:18:53,183 | INFO     | [monitor] control thread has ended
[2025-11-23 01:18:53] 2025-11-23 01:18:53,261 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:18:53] 2025-11-23 01:18:53,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:18:53] 2025-11-23 01:18:53,265 [wrapper] pilotpid: 6746
[2025-11-23 01:18:53] 2025-11-23 01:18:53,266 [wrapper] Pilot exit status: 0
[2025-11-23 01:18:53] 2025-11-23 01:18:53,271 [wrapper] pandaids: 6894292075
[2025-11-23 01:18:53] 2025-11-23 01:18:53,299 [wrapper] cleanup supervisor_pilot 16077 6747
[2025-11-23 01:18:53] 2025-11-23 01:18:53,301 [wrapper] Test setup, not cleaning
[2025-11-23 01:18:53] 2025-11-23 01:18:53,302 [wrapper] apfmon messages muted
[2025-11-23 01:18:53] 2025-11-23 01:18:53,303 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:18:53] 2025-11-23 01:18:53,304 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:18:53]  *** Error codes and diagnostics ***
[2025-11-23 01:18:53]     "exeErrorCode": 0,
[2025-11-23 01:18:53]     "exeErrorDiag": "",
[2025-11-23 01:18:53]     "pilotErrorCode": 0,
[2025-11-23 01:18:53]     "pilotErrorDiag": "",
[2025-11-23 01:18:53]  *** Listing of results directory ***
[2025-11-23 01:18:53] total 1297696
[2025-11-23 01:18:53] -rwx------ 1 boinc boinc     36292 Nov 21 12:22 runpilot2-wrapper.sh
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:22 queuedata.json
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc    576529 Nov 21 12:22 pilot3.tar.gz
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc       100 Nov 22 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:18:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 21:27 run_atlas
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc       105 Nov 22 21:27 job.xml
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc 411610691 Nov 22 21:27 EVNT.47493127._002450.pool.root.1
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc     15847 Nov 22 21:27 start_atlas.sh
[2025-11-23 01:18:53] drwxrwx--x 2 boinc boinc        68 Nov 22 21:27 shared
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc    590092 Nov 22 21:27 input.tar.gz
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc      8919 Nov 22 21:27 init_data.xml
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc         0 Nov 22 21:27 boinc_setup_complete
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc         0 Nov 22 21:27 boinc_lockfile
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc      2781 Nov 22 21:27 pandaJob.out
[2025-11-23 01:18:53] -rw------- 1 boinc boinc    989768 Nov 22 21:27 agis_schedconf.cvmfs.json
[2025-11-23 01:18:53] drwx------ 5 boinc boinc      4096 Nov 22 21:27 pilot3
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc       532 Nov 23 00:56 boinc_task_state.xml
[2025-11-23 01:18:53] -rw------- 1 boinc boinc 905434345 Nov 23 01:17 HITS.47533967._004211.pool.root.1
[2025-11-23 01:18:53] -rw------- 1 boinc boinc      1041 Nov 23 01:17 memory_monitor_summary.json
[2025-11-23 01:18:53] -rw------- 1 boinc boinc   1526164 Nov 23 01:17 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:18:53] -rw------- 1 boinc boinc   1961680 Nov 23 01:17 log.47533967._004211.job.log.tgz.1
[2025-11-23 01:18:53] -rw------- 1 boinc boinc      8633 Nov 23 01:18 heartbeat.json
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc      8192 Nov 23 01:18 boinc_mmap_file
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc        29 Nov 23 01:18 wrapper_checkpoint.txt
[2025-11-23 01:18:53] -rw------- 1 boinc boinc       819 Nov 23 01:18 pilotlog.txt
[2025-11-23 01:18:53] -rw------- 1 boinc boinc        95 Nov 23 01:18 pilot_heartbeat.json
[2025-11-23 01:18:53] -rw------- 1 boinc boinc   1985017 Nov 23 01:18 log.47533967._004211.job.log.1
[2025-11-23 01:18:53] -rw------- 1 boinc boinc       353 Nov 23 01:18 output.list
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc       620 Nov 23 01:18 runtime_log
[2025-11-23 01:18:53] -rw------- 1 boinc boinc   3962880 Nov 23 01:18 result.tar.gz
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc      8814 Nov 23 01:18 runtime_log.err
[2025-11-23 01:18:53] -rw------- 1 boinc boinc       663 Nov 23 01:18 iqGLDmdKfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdPJKDmMS4tgn.diag
[2025-11-23 01:18:53] -rw-r--r-- 1 boinc boinc     22100 Nov 23 01:18 stderr.txt
[2025-11-23 01:18:53] HITS file was successfully produced:
[2025-11-23 01:18:53] -rw------- 1 boinc boinc 905434345 Nov 23 01:17 shared/HITS.pool.root.1
[2025-11-23 01:18:53]  *** Contents of shared directory: ***
[2025-11-23 01:18:53] total 1290648
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc 411610691 Nov 22 21:27 ATLAS.root_0
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc     15847 Nov 22 21:27 start_atlas.sh
[2025-11-23 01:18:53] -rw-r--r-- 2 boinc boinc    590092 Nov 22 21:27 input.tar.gz
[2025-11-23 01:18:53] -rw------- 1 boinc boinc 905434345 Nov 23 01:17 HITS.pool.root.1
[2025-11-23 01:18:53] -rw------- 1 boinc boinc   3962880 Nov 23 01:18 result.tar.gz
01:18:55 (2807): run_atlas exited; CPU time 122804.460199
01:18:55 (2807): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN