Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:59:13 (13058): wrapper (7.7.26015): starting
21:59:13 (13058): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:59:13] Arguments: --nthreads 8
[2025-11-24 21:59:13] Threads: 8
[2025-11-24 21:59:13] Checking for CVMFS
[2025-11-24 21:59:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:59:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:59:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:59:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:59:16] 2.11.2.0 6427 169806 133856 153258 2 87 24057422 25165825 1027 130560 10 54759087 99.883 31975735 2475 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 21:59:16] CVMFS is ok
[2025-11-24 21:59:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:59:16] Checking for apptainer binary...
[2025-11-24 21:59:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:59:16] Running /usr/bin/apptainer --version
[2025-11-24 21:59:16] apptainer version 1.3.2-1.el7
[2025-11-24 21:59:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:59:33] cg-vwn308.simple-grid.lan
[2025-11-24 21:59:33] apptainer works
[2025-11-24 21:59:33] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:59:33] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:59:33] Starting ATLAS job with PandaID=6894262116
[2025-11-24 21:59:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:54:37]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:54:37] 2025-11-25 21:53:24,597 | INFO     | monitor loop #6008: job 0:6894262116 is in state 'finished'
[2025-11-25 22:54:37] 2025-11-25 21:53:24,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:54:37] 2025-11-25 21:53:26,523 | INFO     | time since job start (89374s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:27,102 | INFO     | monitor loop #6009: job 0:6894262116 is in state 'finished'
[2025-11-25 22:54:37] 2025-11-25 21:53:27,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:54:37] 2025-11-25 21:53:28,533 | INFO     | time since job start (89376s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:29,613 | INFO     | monitor loop #6010: job 0:6894262116 is in state 'finished'
[2025-11-25 22:54:37] 2025-11-25 21:53:29,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:54:37] 2025-11-25 21:53:30,539 | INFO     | time since job start (89378s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:32,126 | INFO     | monitor loop #6011: job 0:6894262116 is in state 'finished'
[2025-11-25 22:54:37] 2025-11-25 21:53:32,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:54:37] 2025-11-25 21:53:32,547 | INFO     | time since job start (89380s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:34,556 | INFO     | time since job start (89382s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:34,637 | INFO     | monitor loop #6012: job 0:6894262116 is in state 'finished'
[2025-11-25 22:54:37] 2025-11-25 21:53:34,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,393 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:54:37] 2025-11-25 21:53:36,394 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-25 22:54:37] 2025-11-25 21:53:36,396 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894262116/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,397 | INFO     | extracted standard info from prmon json
[2025-11-25 22:54:37] 2025-11-25 21:53:36,397 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:54:37] 2025-11-25 21:53:36,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:54:37] 2025-11-25 21:53:36,427 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:54:37] 2025-11-25 21:53:36,430 | INFO     | sum of square deviations: 955144897002.0548
[2025-11-25 22:54:37] 2025-11-25 21:53:36,504 | INFO     | sum of deviations: 3892476523030.4365
[2025-11-25 22:54:37] 2025-11-25 21:53:36,504 | INFO     | mean x: 1764063141.2254295
[2025-11-25 22:54:37] 2025-11-25 21:53:36,504 | INFO     | mean y: 2823837.2639175258
[2025-11-25 22:54:37] 2025-11-25 21:53:36,504 | INFO     | intersect: -7186215630.900186
[2025-11-25 22:54:37] 2025-11-25 21:53:36,506 | INFO     | chi2: 32.66107557827163
[2025-11-25 22:54:37] 2025-11-25 21:53:36,508 | INFO     | sum of square deviations: 945332428912.0238
[2025-11-25 22:54:37] 2025-11-25 21:53:36,564 | INFO     | sum of deviations: 4364423112652.7695
[2025-11-25 22:54:37] 2025-11-25 21:53:36,565 | INFO     | mean x: 1764062988.7296553
[2025-11-25 22:54:37] 2025-11-25 21:53:36,565 | INFO     | mean y: 2831170.4331034482
[2025-11-25 22:54:37] 2025-11-25 21:53:36,565 | INFO     | intersect: -8141517891.037143
[2025-11-25 22:54:37] 2025-11-25 21:53:36,567 | INFO     | chi2: 29.51253852905868
[2025-11-25 22:54:37] 2025-11-25 21:53:36,567 | INFO     | current chi2=29.51253852905868 (change=9.640028668583007 %)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,567 | INFO     | right removable region: 1449
[2025-11-25 22:54:37] 2025-11-25 21:53:36,569 | INFO     | sum of square deviations: 945331341282.0254
[2025-11-25 22:54:37] 2025-11-25 21:53:36,609 | INFO     | time since job start (89384s) is within the limit (172800.0s)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,633 | INFO     | sum of deviations: 3267468912385.5156
[2025-11-25 22:54:37] 2025-11-25 21:53:36,634 | INFO     | mean x: 1764063293.7296553
[2025-11-25 22:54:37] 2025-11-25 21:53:36,634 | INFO     | mean y: 2833549.983448276
[2025-11-25 22:54:37] 2025-11-25 21:53:36,634 | INFO     | intersect: -6094522710.230121
[2025-11-25 22:54:37] 2025-11-25 21:53:36,636 | INFO     | chi2: 27.544280128002853
[2025-11-25 22:54:37] 2025-11-25 21:53:36,636 | INFO     | current chi2=27.544280128002853 (change=15.666340926239478 %)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,636 | INFO     | left removable region: 10
[2025-11-25 22:54:37] 2025-11-25 21:53:36,638 | INFO     | sum of square deviations: 923979896205.7643
[2025-11-25 22:54:37] 2025-11-25 21:53:36,698 | INFO     | sum of deviations: 3255890920541.6997
[2025-11-25 22:54:37] 2025-11-25 21:53:36,699 | INFO     | mean x: 1764063263.239055
[2025-11-25 22:54:37] 2025-11-25 21:53:36,699 | INFO     | mean y: 2851598.250868659
[2025-11-25 22:54:37] 2025-11-25 21:53:36,699 | INFO     | intersect: -6213298326.251535
[2025-11-25 22:54:37] 2025-11-25 21:53:36,701 | INFO     | chi2: 19.398050639547602
[2025-11-25 22:54:37] 2025-11-25 21:53:36,701 | INFO     | current memory leak: 3.52 B/s (using 1439 data points, chi2=19.40)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,703 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | ..............................
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . Timing measurements:
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . get job = 0 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . initial setup = 14 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . payload setup = 181 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . stage-in = 0 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . payload execution = 88871 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . stage-out = 7 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | . log creation = 3 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,704 | INFO     | ..............................
[2025-11-25 22:54:37] 2025-11-25 21:53:36,858 | INFO     | 
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | job summary report
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | --------------------------------------------------
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | PanDA job id: 6894262116
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | task id: 47533967
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | errors: (none)
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:54:37] 2025-11-25 21:53:36,859 | INFO     | pilot state: finished 
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | transexitcode: 0
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | exeerrorcode: 0
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | exeerrordiag: 
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | exitcode: 0
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | exitmsg: OK
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | cpuconsumptiontime: 339230 s
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | nevents: 1000
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | neventsw: 0
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | pid: 23276
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | pgrp: 23276
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | corecount: 8
[2025-11-25 22:54:37] 2025-11-25 21:53:36,860 | INFO     | event service: False
[2025-11-25 22:54:37] 2025-11-25 21:53:36,861 | INFO     | sizes: {0: 2284032, 1: 2284287, 2: 2284287, 13: 2284315, 23: 2284371, 34: 2284399, 45: 2284555, 56: 2284583, 66: 2284611, 77: 2284639, 88: 2284695, 99: 2285003, 10
[2025-11-25 22:54:37] 2025-11-25 21:53:36,861 | INFO     | --------------------------------------------------
[2025-11-25 22:54:37] 2025-11-25 21:53:36,861 | INFO     | 
[2025-11-25 22:54:37] 2025-11-25 21:53:36,861 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-25 22:54:37] 2025-11-25 21:53:37,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,144 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:54:37] 2025-11-25 21:53:37,145 | INFO     | job 6894262116 has completed (purged errors)
[2025-11-25 22:54:37] 2025-11-25 21:53:37,145 | INFO     | overall cleanup function is called
[2025-11-25 22:54:37] 2025-11-25 21:53:38,169 | INFO     | --- collectZombieJob: --- 10, [23276]
[2025-11-25 22:54:37] 2025-11-25 21:53:38,170 | INFO     | zombie collector waiting for pid 23276
[2025-11-25 22:54:37] 2025-11-25 21:53:38,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:54:37] 2025-11-25 21:53:38,170 | INFO     | collected zombie processes
[2025-11-25 22:54:37] 2025-11-25 21:53:38,170 | INFO     | will attempt to kill all subprocesses of pid=23276
[2025-11-25 22:54:37] 2025-11-25 21:53:38,281 | INFO     | process IDs to be killed: [23276] (in reverse order)
[2025-11-25 22:54:37] 2025-11-25 21:53:39,099 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:54:37] 2025-11-25 21:53:39,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:54:37] 2025-11-25 21:53:39,103 | INFO     | did not find any defunct processes belonging to 23276
[2025-11-25 22:54:37] 2025-11-25 21:53:39,107 | INFO     | did not find any defunct processes belonging to 23276
[2025-11-25 22:54:37] 2025-11-25 21:53:39,155 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:54:37] 2025-11-25 21:53:39,155 | INFO     | ready for new job
[2025-11-25 22:54:37] 2025-11-25 21:53:39,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:54:37] 2025-11-25 21:53:39,162 | INFO     | ***************************************
[2025-11-25 22:54:37] 2025-11-25 21:53:39,163 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:54:37] 2025-11-25 21:53:39,163 | INFO     | ***************************************
[2025-11-25 22:54:37] 2025-11-25 21:53:39,163 | INFO     | 
[2025-11-25 22:54:37] 2025-11-25 21:53:39,164 | INFO     | pilot is running in a VM
[2025-11-25 22:54:37] 2025-11-25 21:53:39,164 | INFO     | architecture information:
[2025-11-25 22:54:37] 2025-11-25 21:53:39,166 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:54:37] 2025-11-25 21:53:39,482 | INFO     | cat /etc/os-release:
[2025-11-25 22:54:37] NAME="CentOS Linux"
[2025-11-25 22:54:37] VERSION="7 (Core)"
[2025-11-25 22:54:37] ID="centos"
[2025-11-25 22:54:37] ID_LIKE="rhel fedora"
[2025-11-25 22:54:37] VERSION_ID="7"
[2025-11-25 22:54:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:54:37] ANSI_COLOR="0;31"
[2025-11-25 22:54:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:54:37] HOME_URL="https://www.centos.org/"
[2025-11-25 22:54:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:54:37] 
[2025-11-25 22:54:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:54:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:54:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:54:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:54:37] 
[2025-11-25 22:54:37] 2025-11-25 21:53:39,483 | INFO     | ***************************************
[2025-11-25 22:54:37] 2025-11-25 21:53:39,987 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-25 22:54:37] 2025-11-25 21:53:40,241 | INFO     | sufficient remaining disk space (495236153344 B)
[2025-11-25 22:54:37] 2025-11-25 21:53:40,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:54:37] 2025-11-25 21:53:40,242 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:54:37] 2025-11-25 21:53:40,242 | INFO     | update_server=False
[2025-11-25 22:54:37] 2025-11-25 21:53:40,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:54:37] 2025-11-25 21:53:40,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:54:37] 2025-11-25 21:53:40,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:54:37] 2025-11-25 21:53:40,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:54:37] 2025-11-25 21:53:40,676 | INFO     | aborting loop
[2025-11-25 22:54:37] 2025-11-25 21:53:40,846 | INFO     | all payload control threads have been joined
[2025-11-25 22:54:37] 2025-11-25 21:53:41,249 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:41,262 | INFO     | all data control threads have been joined
[2025-11-25 22:54:37] 2025-11-25 21:53:41,438 | INFO     | all job control threads have been joined
[2025-11-25 22:54:37] 2025-11-25 21:53:41,672 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:41,682 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:41,757 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:41,853 | INFO     | [payload] control thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:41,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:54:37] 2025-11-25 21:53:42,210 | INFO     | [job] validate thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,250 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,264 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,268 | INFO     | [data] control thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,443 | INFO     | [job] control thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,450 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,607 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,617 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,771 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:42,884 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:53:44,256 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:54:37] 2025-11-25 21:54:09,795 | INFO     | PID=16798 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 22:54:37] 2025-11-25 21:54:09,796 | INFO     | .. there are 9 such processes running
[2025-11-25 22:54:37] 2025-11-25 21:54:09,796 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:54:37] 2025-11-25 21:54:09,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:54:37] 2025-11-25 21:54:09,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:54:37] 2025-11-25 21:54:28,071 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:54:37] 2025-11-25 21:54:28,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214306756416)>', '<ExcThread(monitor, started 140213988857600)>']
[2025-11-25 22:54:37] 2025-11-25 21:54:28,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:54:37] 2025-11-25 21:54:28,910 | INFO     | [monitor] control thread has ended
[2025-11-25 22:54:37] 2025-11-25 21:54:33,493 | INFO     | all workflow threads have been joined
[2025-11-25 22:54:37] 2025-11-25 21:54:33,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:54:37] 2025-11-25 21:54:33,494 | INFO     | traces error code: 0
[2025-11-25 22:54:37] 2025-11-25 21:54:33,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:54:37] 2025-11-25 21:54:33,905 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:54:37] 2025-11-25 21:54:33,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:54:37] 2025-11-25 21:54:33,999 [wrapper] pilotpid: 16798
[2025-11-25 22:54:37] 2025-11-25 21:54:34,069 [wrapper] Pilot exit status: 0
[2025-11-25 22:54:37] 2025-11-25 21:54:34,398 [wrapper] pandaids: 6894262116
[2025-11-25 22:54:37] 2025-11-25 21:54:34,879 [wrapper] cleanup supervisor_pilot 20441 16799
[2025-11-25 22:54:37] 2025-11-25 21:54:34,980 [wrapper] Test setup, not cleaning
[2025-11-25 22:54:37] 2025-11-25 21:54:35,035 [wrapper] apfmon messages muted
[2025-11-25 22:54:37] 2025-11-25 21:54:35,084 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:54:37] 2025-11-25 21:54:35,137 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:54:37]  *** Error codes and diagnostics ***
[2025-11-25 22:54:38]     "exeErrorCode": 0,
[2025-11-25 22:54:38]     "exeErrorDiag": "",
[2025-11-25 22:54:38]     "pilotErrorCode": 0,
[2025-11-25 22:54:38]     "pilotErrorDiag": "",
[2025-11-25 22:54:38]  *** Listing of results directory ***
[2025-11-25 22:54:38] total 1339808
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-25 22:54:38] -rwx------. 1 boinc boinc     36292 Nov 21 05:47 runpilot2-wrapper.sh
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc      5112 Nov 21 05:47 queuedata.json
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc       100 Nov 24 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:54:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 21:59 run_atlas
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc       105 Nov 24 21:59 job.xml
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc 412087694 Nov 24 21:59 EVNT.47493127._002199.pool.root.1
[2025-11-25 22:54:38] drwxrwx--x. 2 boinc boinc        68 Nov 24 21:59 shared
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc    590102 Nov 24 21:59 input.tar.gz
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc      6391 Nov 24 21:59 init_data.xml
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:59 start_atlas.sh
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc         0 Nov 24 21:59 boinc_lockfile
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc      2785 Nov 24 21:59 pandaJob.out
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc    991801 Nov 24 22:03 agis_schedconf.cvmfs.json
[2025-11-25 22:54:38] drwx------. 5 boinc boinc      4096 Nov 24 22:03 pilot3
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc       533 Nov 25 22:25 boinc_task_state.xml
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc 927031095 Nov 25 22:50 HITS.47533967._001703.pool.root.1
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc      1032 Nov 25 22:51 memory_monitor_summary.json
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc   1516240 Nov 25 22:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc   2541134 Nov 25 22:52 log.47533967._001703.job.log.tgz.1
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc        95 Nov 25 22:53 pilot_heartbeat.json
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc      7965 Nov 25 22:53 heartbeat.json
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc        29 Nov 25 22:54 wrapper_checkpoint.txt
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc      8192 Nov 25 22:54 boinc_mmap_file
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc      4884 Nov 25 22:54 pilotlog.txt
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc  11928729 Nov 25 22:54 log.47533967._001703.job.log.1
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc       353 Nov 25 22:54 output.list
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc       620 Nov 25 22:54 runtime_log
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc  14489600 Nov 25 22:54 result.tar.gz
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc      8817 Nov 25 22:54 runtime_log.err
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc       662 Nov 25 22:54 dSzLDmSEYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma2IKDmHZSWtn.diag
[2025-11-25 22:54:38] -rw-r--r--. 1 boinc boinc     21452 Nov 25 22:54 stderr.txt
[2025-11-25 22:54:38] HITS file was successfully produced:
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc 927031095 Nov 25 22:50 shared/HITS.pool.root.1
[2025-11-25 22:54:38]  *** Contents of shared directory: ***
[2025-11-25 22:54:38] total 1322484
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc 412087694 Nov 24 21:59 ATLAS.root_0
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc    590102 Nov 24 21:59 input.tar.gz
[2025-11-25 22:54:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:59 start_atlas.sh
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc 927031095 Nov 25 22:50 HITS.pool.root.1
[2025-11-25 22:54:38] -rw-------. 1 boinc boinc  14489600 Nov 25 22:54 result.tar.gz
22:54:39 (13058): run_atlas exited; CPU time 339615.794650
22:54:39 (13058): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN