Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:59:48 (13423): wrapper (7.7.26015): starting
02:59:48 (13423): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:59:48] Arguments: --nthreads 8
[2025-11-25 02:59:48] Threads: 8
[2025-11-25 02:59:48] Checking for CVMFS
[2025-11-25 02:59:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:59:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:59:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:59:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:59:52] 2.11.2.0 3687 283336 136568 153265 2 87 13871444 25165824 1027 130560 10 145329382 99.882 77139720 2559 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:59:52] CVMFS is ok
[2025-11-25 02:59:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:59:52] Checking for apptainer binary...
[2025-11-25 02:59:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:59:52] Running /usr/bin/apptainer --version
[2025-11-25 02:59:52] apptainer version 1.3.2-1.el7
[2025-11-25 02:59:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:59:59] cg-vwn214.simple-grid.lan
[2025-11-25 02:59:59] apptainer works
[2025-11-25 02:59:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:59:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:59:59] Starting ATLAS job with PandaID=6895330503
[2025-11-25 02:59:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:23:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:23:39] 2025-11-26 02:22:40,760 | INFO     | time since job start (87524s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:41,456 | INFO     | monitor loop #5883: job 0:6895330503 is in state 'finished'
[2025-11-26 03:23:39] 2025-11-26 02:22:41,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:39] 2025-11-26 02:22:42,767 | INFO     | time since job start (87526s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:43,964 | INFO     | monitor loop #5884: job 0:6895330503 is in state 'finished'
[2025-11-26 03:23:39] 2025-11-26 02:22:43,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:39] 2025-11-26 02:22:44,775 | INFO     | time since job start (87528s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:46,468 | INFO     | monitor loop #5885: job 0:6895330503 is in state 'finished'
[2025-11-26 03:23:39] 2025-11-26 02:22:46,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:39] 2025-11-26 02:22:46,782 | INFO     | time since job start (87530s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:48,001 | INFO     | PID=17167 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:23:39] 2025-11-26 02:22:48,001 | INFO     | .. there are 9 such processes running
[2025-11-26 03:23:39] 2025-11-26 02:22:48,977 | INFO     | monitor loop #5886: job 0:6895330503 is in state 'finished'
[2025-11-26 03:23:39] 2025-11-26 02:22:48,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:23:39] 2025-11-26 02:22:49,003 | INFO     | time since job start (87533s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:49,781 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:23:39] 2025-11-26 02:22:49,782 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 03:23:39] 2025-11-26 02:22:49,784 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6895330503/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:23:39] 2025-11-26 02:22:49,785 | INFO     | extracted standard info from prmon json
[2025-11-26 03:23:39] 2025-11-26 02:22:49,785 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:23:39] 2025-11-26 02:22:49,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:23:39] 2025-11-26 02:22:49,828 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:23:39] 2025-11-26 02:22:49,830 | INFO     | sum of square deviations: 895384518458.6394
[2025-11-26 03:23:39] 2025-11-26 02:22:49,929 | INFO     | sum of deviations: 3932384336219.127
[2025-11-26 03:23:39] 2025-11-26 02:22:49,930 | INFO     | mean x: 1764080211.7745786
[2025-11-26 03:23:39] 2025-11-26 02:22:49,930 | INFO     | mean y: 2834819.9536516853
[2025-11-26 03:23:39] 2025-11-26 02:22:49,930 | INFO     | intersect: -7744720838.656854
[2025-11-26 03:23:39] 2025-11-26 02:22:49,932 | INFO     | chi2: 25.56669838358911
[2025-11-26 03:23:39] 2025-11-26 02:22:49,934 | INFO     | sum of square deviations: 885986458595.4885
[2025-11-26 03:23:39] 2025-11-26 02:22:50,016 | INFO     | sum of deviations: 4412429257833.553
[2025-11-26 03:23:39] 2025-11-26 02:22:50,017 | INFO     | mean x: 1764080059.2790697
[2025-11-26 03:23:39] 2025-11-26 02:22:50,017 | INFO     | mean y: 2842608.36222692
[2025-11-26 03:23:39] 2025-11-26 02:22:50,017 | INFO     | intersect: -8782707544.473202
[2025-11-26 03:23:39] 2025-11-26 02:22:50,019 | INFO     | chi2: 22.298933874239356
[2025-11-26 03:23:39] 2025-11-26 02:22:50,019 | INFO     | current chi2=22.298933874239356 (change=12.781331638219207 %)
[2025-11-26 03:23:39] 2025-11-26 02:22:50,019 | INFO     | right removable region: 1418
[2025-11-26 03:23:39] 2025-11-26 02:22:50,021 | INFO     | sum of square deviations: 885985351445.4875
[2025-11-26 03:23:39] 2025-11-26 02:22:50,087 | INFO     | sum of deviations: 3318316731700.6045
[2025-11-26 03:23:39] 2025-11-26 02:22:50,087 | INFO     | mean x: 1764080364.2790697
[2025-11-26 03:23:39] 2025-11-26 02:22:50,088 | INFO     | mean y: 2844783.3974630022
[2025-11-26 03:23:39] 2025-11-26 02:22:50,088 | INFO     | intersect: -6604236676.02089
[2025-11-26 03:23:39] 2025-11-26 02:22:50,089 | INFO     | chi2: 20.448371142755953
[2025-11-26 03:23:39] 2025-11-26 02:22:50,090 | INFO     | current chi2=20.448371142755953 (change=20.01950804926199 %)
[2025-11-26 03:23:39] 2025-11-26 02:22:50,090 | INFO     | left removable region: 10
[2025-11-26 03:23:39] 2025-11-26 02:22:50,092 | INFO     | sum of square deviations: 865540509504.3364
[2025-11-26 03:23:39] 2025-11-26 02:22:50,158 | INFO     | sum of deviations: 3377675412883.7334
[2025-11-26 03:23:39] 2025-11-26 02:22:50,159 | INFO     | mean x: 1764080333.7890625
[2025-11-26 03:23:39] 2025-11-26 02:22:50,159 | INFO     | mean y: 2863412.1370738638
[2025-11-26 03:23:39] 2025-11-26 02:22:50,159 | INFO     | intersect: -6881263563.275385
[2025-11-26 03:23:39] 2025-11-26 02:22:50,161 | INFO     | chi2: 12.377020708279368
[2025-11-26 03:23:39] 2025-11-26 02:22:50,161 | INFO     | current memory leak: 3.90 B/s (using 1408 data points, chi2=12.38)
[2025-11-26 03:23:39] 2025-11-26 02:22:50,162 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | ..............................
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . Timing measurements:
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . get job = 0 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . initial setup = 11 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . payload setup = 176 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . stage-in = 0 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . payload execution = 87005 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . stage-out = 5 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | . log creation = 2 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,163 | INFO     | ..............................
[2025-11-26 03:23:39] 2025-11-26 02:22:50,792 | INFO     | 
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | job summary report
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | --------------------------------------------------
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | PanDA job id: 6895330503
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | task id: 47556137
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | errors: (none)
[2025-11-26 03:23:39] 2025-11-26 02:22:50,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | pilot state: finished 
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | transexitcode: 0
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | exeerrorcode: 0
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | exeerrordiag: 
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | exitcode: 0
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | exitmsg: OK
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | cpuconsumptiontime: 334490 s
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | nevents: 1000
[2025-11-26 03:23:39] 2025-11-26 02:22:50,794 | INFO     | neventsw: 0
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | pid: 23639
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | pgrp: 23639
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | corecount: 8
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | event service: False
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | sizes: {0: 2283482, 1: 2284168, 2: 2284367, 13: 2284367, 23: 2284423, 34: 2284451, 45: 2284607, 55: 2284635, 66: 2284663, 77: 2284691, 88: 2284747, 98: 2285055, 10
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | --------------------------------------------------
[2025-11-26 03:23:39] 2025-11-26 02:22:50,795 | INFO     | 
[2025-11-26 03:23:39] 2025-11-26 02:22:50,796 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-26 03:23:39] 2025-11-26 02:22:51,045 | INFO     | time since job start (87535s) is within the limit (172800.0s)
[2025-11-26 03:23:39] 2025-11-26 02:22:51,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | job 6895330503 has completed (purged errors)
[2025-11-26 03:23:39] 2025-11-26 02:22:51,370 | INFO     | overall cleanup function is called
[2025-11-26 03:23:39] 2025-11-26 02:22:52,393 | INFO     | --- collectZombieJob: --- 10, [23639]
[2025-11-26 03:23:39] 2025-11-26 02:22:52,394 | INFO     | zombie collector waiting for pid 23639
[2025-11-26 03:23:39] 2025-11-26 02:22:52,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:23:39] 2025-11-26 02:22:52,394 | INFO     | collected zombie processes
[2025-11-26 03:23:39] 2025-11-26 02:22:52,394 | INFO     | will attempt to kill all subprocesses of pid=23639
[2025-11-26 03:23:39] 2025-11-26 02:22:52,524 | INFO     | process IDs to be killed: [23639] (in reverse order)
[2025-11-26 03:23:39] 2025-11-26 02:22:53,301 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:23:39] 2025-11-26 02:22:53,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:23:39] 2025-11-26 02:22:53,310 | INFO     | did not find any defunct processes belonging to 23639
[2025-11-26 03:23:39] 2025-11-26 02:22:53,317 | INFO     | did not find any defunct processes belonging to 23639
[2025-11-26 03:23:39] 2025-11-26 02:22:53,355 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:23:39] 2025-11-26 02:22:53,355 | INFO     | ready for new job
[2025-11-26 03:23:39] 2025-11-26 02:22:53,355 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:23:39] 2025-11-26 02:22:53,361 | INFO     | ***************************************
[2025-11-26 03:23:39] 2025-11-26 02:22:53,361 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:23:39] 2025-11-26 02:22:53,361 | INFO     | ***************************************
[2025-11-26 03:23:39] 2025-11-26 02:22:53,361 | INFO     | 
[2025-11-26 03:23:39] 2025-11-26 02:22:53,362 | INFO     | pilot is running in a VM
[2025-11-26 03:23:39] 2025-11-26 02:22:53,362 | INFO     | architecture information:
[2025-11-26 03:23:39] 2025-11-26 02:22:53,369 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:23:39] 2025-11-26 02:22:53,488 | INFO     | cat /etc/os-release:
[2025-11-26 03:23:39] NAME="CentOS Linux"
[2025-11-26 03:23:39] VERSION="7 (Core)"
[2025-11-26 03:23:39] ID="centos"
[2025-11-26 03:23:39] ID_LIKE="rhel fedora"
[2025-11-26 03:23:39] VERSION_ID="7"
[2025-11-26 03:23:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:23:39] ANSI_COLOR="0;31"
[2025-11-26 03:23:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:23:39] HOME_URL="https://www.centos.org/"
[2025-11-26 03:23:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:23:39] 
[2025-11-26 03:23:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:23:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:23:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:23:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:23:39] 
[2025-11-26 03:23:39] 2025-11-26 02:22:53,488 | INFO     | ***************************************
[2025-11-26 03:23:39] 2025-11-26 02:22:53,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-26 03:23:39] 2025-11-26 02:22:54,216 | INFO     | sufficient remaining disk space (495762538496 B)
[2025-11-26 03:23:39] 2025-11-26 02:22:54,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:23:39] 2025-11-26 02:22:54,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:23:39] 2025-11-26 02:22:54,217 | INFO     | update_server=False
[2025-11-26 03:23:39] 2025-11-26 02:22:54,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:23:39] 2025-11-26 02:22:54,577 | INFO     | all data control threads have been joined
[2025-11-26 03:23:39] 2025-11-26 02:22:54,628 | INFO     | all payload control threads have been joined
[2025-11-26 03:23:39] 2025-11-26 02:22:54,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:23:39] 2025-11-26 02:22:55,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:23:39] 2025-11-26 02:22:55,014 | INFO     | aborting loop
[2025-11-26 03:23:39] 2025-11-26 02:22:55,223 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,311 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:23:39] 2025-11-26 02:22:55,420 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,583 | INFO     | [data] control thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,634 | INFO     | [payload] control thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,638 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,764 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:55,864 | INFO     | all job control threads have been joined
[2025-11-26 03:23:39] 2025-11-26 02:22:56,020 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,322 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,686 | INFO     | [job] validate thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,696 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,871 | INFO     | [job] control thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:56,993 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:22:57,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:23:39] 2025-11-26 02:23:01,403 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:23:39] 2025-11-26 02:23:24,249 | INFO     | PID=17167 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:23:39] 2025-11-26 02:23:24,249 | INFO     | .. there are 9 such processes running
[2025-11-26 03:23:39] 2025-11-26 02:23:24,249 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:23:39] 2025-11-26 02:23:24,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:23:39] 2025-11-26 02:23:24,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:23:39] 2025-11-26 02:23:29,017 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:23:39] 2025-11-26 02:23:29,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853593630528)>', '<ExcThread(monitor, started 139853144495872)>']
[2025-11-26 03:23:39] 2025-11-26 02:23:30,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:23:39] 2025-11-26 02:23:30,286 | INFO     | [monitor] control thread has ended
[2025-11-26 03:23:39] 2025-11-26 02:23:34,729 | INFO     | all workflow threads have been joined
[2025-11-26 03:23:39] 2025-11-26 02:23:34,729 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:23:39] 2025-11-26 02:23:34,729 | INFO     | traces error code: 0
[2025-11-26 03:23:39] 2025-11-26 02:23:34,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:23:39] 2025-11-26 02:23:35,151 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:23:39] 2025-11-26 02:23:35,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:23:39] 2025-11-26 02:23:35,413 [wrapper] pilotpid: 17167
[2025-11-26 03:23:39] 2025-11-26 02:23:35,490 [wrapper] Pilot exit status: 0
[2025-11-26 03:23:39] 2025-11-26 02:23:35,904 [wrapper] pandaids: 6895330503
[2025-11-26 03:23:39] 2025-11-26 02:23:36,295 [wrapper] cleanup supervisor_pilot 19018 17168
[2025-11-26 03:23:39] 2025-11-26 02:23:36,305 [wrapper] Test setup, not cleaning
[2025-11-26 03:23:39] 2025-11-26 02:23:36,320 [wrapper] apfmon messages muted
[2025-11-26 03:23:39] 2025-11-26 02:23:36,340 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:23:39] 2025-11-26 02:23:36,355 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:23:39]  *** Error codes and diagnostics ***
[2025-11-26 03:23:39]     "exeErrorCode": 0,
[2025-11-26 03:23:39]     "exeErrorDiag": "",
[2025-11-26 03:23:39]     "pilotErrorCode": 0,
[2025-11-26 03:23:39]     "pilotErrorDiag": "",
[2025-11-26 03:23:39]  *** Listing of results directory ***
[2025-11-26 03:23:39] total 1313532
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc    576529 Nov 21 22:26 pilot3.tar.gz
[2025-11-26 03:23:39] -rwx------. 1 boinc boinc     36292 Nov 21 22:35 runpilot2-wrapper.sh
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc      5112 Nov 21 22:35 queuedata.json
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:23:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:59 run_atlas
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:59 job.xml
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc      6392 Nov 25 02:59 init_data.xml
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc 409478900 Nov 25 02:59 EVNT.47483658._000143.pool.root.1
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:59 start_atlas.sh
[2025-11-26 03:23:39] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:59 shared
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc    590096 Nov 25 02:59 input.tar.gz
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:59 boinc_lockfile
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc      2786 Nov 25 02:59 pandaJob.out
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc    991801 Nov 25 03:03 agis_schedconf.cvmfs.json
[2025-11-26 03:23:39] drwx------. 5 boinc boinc      4096 Nov 25 03:03 pilot3
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:01 boinc_task_state.xml
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc 903305309 Nov 26 03:19 HITS.47556137._001423.pool.root.1
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc      1033 Nov 26 03:20 memory_monitor_summary.json
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc   1516240 Nov 26 03:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc   2515581 Nov 26 03:21 log.47556137._001423.job.log.tgz.1
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc        95 Nov 26 03:22 pilot_heartbeat.json
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc      8629 Nov 26 03:22 heartbeat.json
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc        29 Nov 26 03:23 wrapper_checkpoint.txt
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc      8192 Nov 26 03:23 boinc_mmap_file
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc      4885 Nov 26 03:23 pilotlog.txt
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc  11666326 Nov 26 03:23 log.47556137._001423.job.log.1
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc       353 Nov 26 03:23 output.list
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc       620 Nov 26 03:23 runtime_log
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc  14202880 Nov 26 03:23 result.tar.gz
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc       662 Nov 26 03:23 wABNDmXyng8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6iJKDmmSn9lm.diag
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc      8833 Nov 26 03:23 runtime_log.err
[2025-11-26 03:23:39] -rw-r--r--. 1 boinc boinc     21509 Nov 26 03:23 stderr.txt
[2025-11-26 03:23:39] HITS file was successfully produced:
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc 903305309 Nov 26 03:19 shared/HITS.pool.root.1
[2025-11-26 03:23:39]  *** Contents of shared directory: ***
[2025-11-26 03:23:39] total 1296488
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc 409478900 Nov 25 02:59 ATLAS.root_0
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:59 start_atlas.sh
[2025-11-26 03:23:39] -rw-r--r--. 2 boinc boinc    590096 Nov 25 02:59 input.tar.gz
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc 903305309 Nov 26 03:19 HITS.pool.root.1
[2025-11-26 03:23:39] -rw-------. 1 boinc boinc  14202880 Nov 26 03:23 result.tar.gz
03:23:41 (13423): run_atlas exited; CPU time 334922.763382
03:23:41 (13423): called boinc_finish(0)

</stderr_txt>
]]>

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