Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:51 (27204): wrapper (7.7.26015): starting
02:49:51 (27204): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:49:51] Arguments: --nthreads 8
[2025-11-25 02:49:51] Threads: 8
[2025-11-25 02:49:51] Checking for CVMFS
[2025-11-25 02:49:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:49:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:49:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:49:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:49:55] 2.11.2.0 32446 170097 135588 153265 3 85 13034908 25165824 1027 130560 12 58509219 99.897 28637592 2346 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:49:55] CVMFS is ok
[2025-11-25 02:49:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:49:55] Checking for apptainer binary...
[2025-11-25 02:49:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:49:55] Running /usr/bin/apptainer --version
[2025-11-25 02:49:55] apptainer version 1.3.2-1.el7
[2025-11-25 02:49:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:50:05] cg-vwn269.simple-grid.lan
[2025-11-25 02:50:05] apptainer works
[2025-11-25 02:50:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:50:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:50:05] Starting ATLAS job with PandaID=6893887149
[2025-11-25 02:50:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:46:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:46:55] 2025-11-26 02:46:15,251 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 03:46:55] 2025-11-26 02:46:15,398 | INFO     | monitor loop #5987: job 0:6893887149 is in state 'finished'
[2025-11-26 03:46:55] 2025-11-26 02:46:15,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:46:55] 2025-11-26 02:46:15,803 | INFO     | time since job start (89478s) is within the limit (172800.0s)
[2025-11-26 03:46:55] 2025-11-26 02:46:17,815 | INFO     | time since job start (89480s) is within the limit (172800.0s)
[2025-11-26 03:46:55] 2025-11-26 02:46:17,902 | INFO     | monitor loop #5988: job 0:6893887149 is in state 'finished'
[2025-11-26 03:46:55] 2025-11-26 02:46:17,903 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:46:55] 2025-11-26 02:46:19,822 | INFO     | time since job start (89482s) is within the limit (172800.0s)
[2025-11-26 03:46:55] 2025-11-26 02:46:20,414 | INFO     | monitor loop #5989: job 0:6893887149 is in state 'finished'
[2025-11-26 03:46:55] 2025-11-26 02:46:20,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:46:55] 2025-11-26 02:46:20,959 | INFO     | PID=30925 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:46:55] 2025-11-26 02:46:20,959 | INFO     | .. there are 9 such processes running
[2025-11-26 03:46:55] 2025-11-26 02:46:21,960 | INFO     | time since job start (89484s) is within the limit (172800.0s)
[2025-11-26 03:46:55] 2025-11-26 02:46:22,920 | INFO     | monitor loop #5990: job 0:6893887149 is in state 'finished'
[2025-11-26 03:46:55] 2025-11-26 02:46:22,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,325 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:46:55] 2025-11-26 02:46:23,326 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 03:46:55] 2025-11-26 02:46:23,327 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6893887149/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,328 | INFO     | extracted standard info from prmon json
[2025-11-26 03:46:55] 2025-11-26 02:46:23,328 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:46:55] 2025-11-26 02:46:23,328 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:46:55] 2025-11-26 02:46:23,356 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:46:55] 2025-11-26 02:46:23,358 | INFO     | sum of square deviations: 961069237445.6115
[2025-11-26 03:46:55] 2025-11-26 02:46:23,420 | INFO     | sum of deviations: 5385463368737.479
[2025-11-26 03:46:55] 2025-11-26 02:46:23,420 | INFO     | mean x: 1764080691.7469137
[2025-11-26 03:46:55] 2025-11-26 02:46:23,420 | INFO     | mean y: 2851272.4945130316
[2025-11-26 03:46:55] 2025-11-26 02:46:23,420 | INFO     | intersect: -9882380274.559057
[2025-11-26 03:46:55] 2025-11-26 02:46:23,422 | INFO     | chi2: 22.858323378945467
[2025-11-26 03:46:55] 2025-11-26 02:46:23,424 | INFO     | sum of square deviations: 951216202525.3093
[2025-11-26 03:46:55] 2025-11-26 02:46:23,490 | INFO     | sum of deviations: 5886402012372.536
[2025-11-26 03:46:55] 2025-11-26 02:46:23,490 | INFO     | mean x: 1764080539.2512045
[2025-11-26 03:46:55] 2025-11-26 02:46:23,490 | INFO     | mean y: 2859025.549208534
[2025-11-26 03:46:55] 2025-11-26 02:46:23,490 | INFO     | intersect: -10913783488.179659
[2025-11-26 03:46:55] 2025-11-26 02:46:23,492 | INFO     | chi2: 19.630333504991974
[2025-11-26 03:46:55] 2025-11-26 02:46:23,492 | INFO     | current chi2=19.630333504991974 (change=14.121726342041155 %)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,492 | INFO     | right removable region: 1452
[2025-11-26 03:46:55] 2025-11-26 02:46:23,494 | INFO     | sum of square deviations: 951215093545.3097
[2025-11-26 03:46:55] 2025-11-26 02:46:23,559 | INFO     | sum of deviations: 4766900355867.457
[2025-11-26 03:46:55] 2025-11-26 02:46:23,560 | INFO     | mean x: 1764080844.2512045
[2025-11-26 03:46:55] 2025-11-26 02:46:23,560 | INFO     | mean y: 2860845.020646937
[2025-11-26 03:46:55] 2025-11-26 02:46:23,560 | INFO     | intersect: -8837618728.214249
[2025-11-26 03:46:55] 2025-11-26 02:46:23,562 | INFO     | chi2: 17.839797305223925
[2025-11-26 03:46:55] 2025-11-26 02:46:23,562 | INFO     | current chi2=17.839797305223925 (change=21.9549176487023 %)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,562 | INFO     | left removable region: 10
[2025-11-26 03:46:55] 2025-11-26 02:46:23,564 | INFO     | sum of square deviations: 929774871264.4564
[2025-11-26 03:46:55] 2025-11-26 02:46:23,634 | INFO     | sum of deviations: 4805726430673.113
[2025-11-26 03:46:55] 2025-11-26 02:46:23,635 | INFO     | mean x: 1764080813.7607489
[2025-11-26 03:46:55] 2025-11-26 02:46:23,635 | INFO     | mean y: 2879326.977115118
[2025-11-26 03:46:55] 2025-11-26 02:46:23,635 | INFO     | intersect: -9115123379.424326
[2025-11-26 03:46:55] 2025-11-26 02:46:23,637 | INFO     | chi2: 9.648912754527391
[2025-11-26 03:46:55] 2025-11-26 02:46:23,637 | INFO     | current memory leak: 5.17 B/s (using 1442 data points, chi2=9.65)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,639 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,639 | INFO     | ..............................
[2025-11-26 03:46:55] 2025-11-26 02:46:23,639 | INFO     | . Timing measurements:
[2025-11-26 03:46:55] 2025-11-26 02:46:23,640 | INFO     | . get job = 0 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,640 | INFO     | . initial setup = 11 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,640 | INFO     | . payload setup = 195 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,640 | INFO     | . stage-in = 0 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,641 | INFO     | . payload execution = 89081 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,641 | INFO     | . stage-out = 3 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,641 | INFO     | . log creation = 1 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,641 | INFO     | ..............................
[2025-11-26 03:46:55] 2025-11-26 02:46:23,798 | INFO     | 
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | job summary report
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | --------------------------------------------------
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | PanDA job id: 6893887149
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | task id: 47523449
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | errors: (none)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | pilot state: finished 
[2025-11-26 03:46:55] 2025-11-26 02:46:23,799 | INFO     | transexitcode: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | exeerrorcode: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | exeerrordiag: 
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | exitcode: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | exitmsg: OK
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | cpuconsumptiontime: 348203 s
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | nevents: 1000
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | neventsw: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:23,800 | INFO     | pid: 5032
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | pgrp: 5032
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | corecount: 8
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | event service: False
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | sizes: {0: 2283482, 1: 2284084, 2: 2284196, 3: 2284395, 14: 2284395, 24: 2284423, 35: 2284579, 46: 2284607, 56: 2284635, 67: 2284663, 78: 2284691, 89: 2285027, 92:
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | --------------------------------------------------
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | 
[2025-11-26 03:46:55] 2025-11-26 02:46:23,801 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-26 03:46:55] 2025-11-26 02:46:23,844 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,845 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,846 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:46:55] 2025-11-26 02:46:23,847 | INFO     | job 6893887149 has completed (purged errors)
[2025-11-26 03:46:55] 2025-11-26 02:46:23,847 | INFO     | overall cleanup function is called
[2025-11-26 03:46:55] 2025-11-26 02:46:24,864 | INFO     | --- collectZombieJob: --- 10, [5032]
[2025-11-26 03:46:55] 2025-11-26 02:46:24,864 | INFO     | zombie collector waiting for pid 5032
[2025-11-26 03:46:55] 2025-11-26 02:46:24,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:46:55] 2025-11-26 02:46:24,864 | INFO     | collected zombie processes
[2025-11-26 03:46:55] 2025-11-26 02:46:24,864 | INFO     | will attempt to kill all subprocesses of pid=5032
[2025-11-26 03:46:55] 2025-11-26 02:46:24,963 | INFO     | process IDs to be killed: [5032] (in reverse order)
[2025-11-26 03:46:55] 2025-11-26 02:46:25,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:46:55] 2025-11-26 02:46:25,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:46:55] 2025-11-26 02:46:25,046 | INFO     | did not find any defunct processes belonging to 5032
[2025-11-26 03:46:55] 2025-11-26 02:46:25,048 | INFO     | did not find any defunct processes belonging to 5032
[2025-11-26 03:46:55] 2025-11-26 02:46:25,050 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:46:55] 2025-11-26 02:46:25,051 | INFO     | ready for new job
[2025-11-26 03:46:55] 2025-11-26 02:46:25,051 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:46:55] 2025-11-26 02:46:25,056 | INFO     | ***************************************
[2025-11-26 03:46:55] 2025-11-26 02:46:25,056 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:46:55] 2025-11-26 02:46:25,057 | INFO     | ***************************************
[2025-11-26 03:46:55] 2025-11-26 02:46:25,057 | INFO     | 
[2025-11-26 03:46:55] 2025-11-26 02:46:25,057 | INFO     | pilot is running in a VM
[2025-11-26 03:46:55] 2025-11-26 02:46:25,057 | INFO     | architecture information:
[2025-11-26 03:46:55] 2025-11-26 02:46:25,058 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:46:55] 2025-11-26 02:46:25,081 | INFO     | cat /etc/os-release:
[2025-11-26 03:46:55] NAME="CentOS Linux"
[2025-11-26 03:46:55] VERSION="7 (Core)"
[2025-11-26 03:46:55] ID="centos"
[2025-11-26 03:46:55] ID_LIKE="rhel fedora"
[2025-11-26 03:46:55] VERSION_ID="7"
[2025-11-26 03:46:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:46:55] ANSI_COLOR="0;31"
[2025-11-26 03:46:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:46:55] HOME_URL="https://www.centos.org/"
[2025-11-26 03:46:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:46:55] 
[2025-11-26 03:46:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:46:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:46:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:46:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:46:55] 
[2025-11-26 03:46:55] 2025-11-26 02:46:25,081 | INFO     | ***************************************
[2025-11-26 03:46:55] 2025-11-26 02:46:25,585 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-26 03:46:55] 2025-11-26 02:46:25,647 | INFO     | sufficient remaining disk space (495760441344 B)
[2025-11-26 03:46:55] 2025-11-26 02:46:25,647 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:46:55] 2025-11-26 02:46:25,647 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:46:55] 2025-11-26 02:46:25,647 | INFO     | update_server=False
[2025-11-26 03:46:55] 2025-11-26 02:46:25,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:46:55] 2025-11-26 02:46:25,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:46:55] 2025-11-26 02:46:25,978 | INFO     | all payload control threads have been joined
[2025-11-26 03:46:55] 2025-11-26 02:46:26,044 | INFO     | all data control threads have been joined
[2025-11-26 03:46:55] 2025-11-26 02:46:26,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:46:55] 2025-11-26 02:46:26,459 | INFO     | aborting loop
[2025-11-26 03:46:55] 2025-11-26 02:46:26,579 | INFO     | all job control threads have been joined
[2025-11-26 03:46:55] 2025-11-26 02:46:26,650 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:26,658 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:26,985 | INFO     | [payload] control thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,000 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:46:55] 2025-11-26 02:46:27,049 | INFO     | [data] control thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,198 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,334 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,379 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,465 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,484 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:46:55] 2025-11-26 02:46:27,559 | INFO     | [job] validate thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,582 | INFO     | [job] control thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:27,591 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:28,109 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:29,050 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:31,509 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:46:55] 2025-11-26 02:46:32,912 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:46:55] 2025-11-26 02:46:33,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098515973952)>', '<ExcThread(monitor, started 140097798268672)>']
[2025-11-26 03:46:55] 2025-11-26 02:46:38,154 | INFO     | all workflow threads have been joined
[2025-11-26 03:46:55] 2025-11-26 02:46:38,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:46:55] 2025-11-26 02:46:38,155 | INFO     | traces error code: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:38,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:46:55] 2025-11-26 02:46:54,006 | INFO     | 89498s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 03:46:55] 2025-11-26 02:46:55,126 | INFO     | PID=30925 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:46:55] 2025-11-26 02:46:55,126 | INFO     | .. there are 8 such processes running
[2025-11-26 03:46:55] 2025-11-26 02:46:55,128 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:46:55] 2025-11-26 02:46:55,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:46:55] 2025-11-26 02:46:55,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:46:55] 2025-11-26 02:46:55,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:46:55] 2025-11-26 02:46:55,129 | INFO     | [monitor] control thread has ended
[2025-11-26 03:46:55] 2025-11-26 02:46:55,292 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:46:55] 2025-11-26 02:46:55,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:46:55] 2025-11-26 02:46:55,302 [wrapper] pilotpid: 30925
[2025-11-26 03:46:55] 2025-11-26 02:46:55,305 [wrapper] Pilot exit status: 0
[2025-11-26 03:46:55] 2025-11-26 02:46:55,328 [wrapper] pandaids: 6893887149
[2025-11-26 03:46:55] 2025-11-26 02:46:55,367 [wrapper] cleanup supervisor_pilot 25779 30926
[2025-11-26 03:46:55] 2025-11-26 02:46:55,375 [wrapper] Test setup, not cleaning
[2025-11-26 03:46:55] 2025-11-26 02:46:55,379 [wrapper] apfmon messages muted
[2025-11-26 03:46:55] 2025-11-26 02:46:55,382 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:46:55] 2025-11-26 02:46:55,388 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:46:55]  *** Error codes and diagnostics ***
[2025-11-26 03:46:55]     "exeErrorCode": 0,
[2025-11-26 03:46:55]     "exeErrorDiag": "",
[2025-11-26 03:46:55]     "pilotErrorCode": 0,
[2025-11-26 03:46:55]     "pilotErrorDiag": "",
[2025-11-26 03:46:55]  *** Listing of results directory ***
[2025-11-26 03:46:55] total 1345284
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc    576529 Nov 21 00:03 pilot3.tar.gz
[2025-11-26 03:46:55] -rwx------. 1 boinc boinc     36292 Nov 21 00:10 runpilot2-wrapper.sh
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc      5112 Nov 21 00:10 queuedata.json
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:46:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:49 run_atlas
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:49 job.xml
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc 411861878 Nov 25 02:49 EVNT.47493127._000967.pool.root.1
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:49 start_atlas.sh
[2025-11-26 03:46:55] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:49 shared
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc    590102 Nov 25 02:49 input.tar.gz
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc      6392 Nov 25 02:49 init_data.xml
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:49 boinc_lockfile
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc      2786 Nov 25 02:50 pandaJob.out
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc    991801 Nov 25 02:54 agis_schedconf.cvmfs.json
[2025-11-26 03:46:55] drwx------. 5 boinc boinc      4096 Nov 25 02:54 pilot3
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:29 boinc_task_state.xml
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc 932822243 Nov 26 03:45 HITS.47523449._009664.pool.root.1
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc      1032 Nov 26 03:46 memory_monitor_summary.json
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc   1516240 Nov 26 03:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc   2545442 Nov 26 03:46 log.47523449._009664.job.log.tgz.1
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc      8628 Nov 26 03:46 heartbeat.json
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc        29 Nov 26 03:46 wrapper_checkpoint.txt
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc      8192 Nov 26 03:46 boinc_mmap_file
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc        95 Nov 26 03:46 pilot_heartbeat.json
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc       936 Nov 26 03:46 pilotlog.txt
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc  11946646 Nov 26 03:46 log.47523449._009664.job.log.1
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc       353 Nov 26 03:46 output.list
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc       620 Nov 26 03:46 runtime_log
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc  14510080 Nov 26 03:46 result.tar.gz
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc      8833 Nov 26 03:46 runtime_log.err
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc       662 Nov 26 03:46 lk1MDmuySg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyeIKDmQmxrEm.diag
[2025-11-26 03:46:55] -rw-r--r--. 1 boinc boinc     21617 Nov 26 03:46 stderr.txt
[2025-11-26 03:46:55] HITS file was successfully produced:
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc 932822243 Nov 26 03:45 shared/HITS.pool.root.1
[2025-11-26 03:46:55]  *** Contents of shared directory: ***
[2025-11-26 03:46:55] total 1327940
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc 411861878 Nov 25 02:49 ATLAS.root_0
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:49 start_atlas.sh
[2025-11-26 03:46:55] -rw-r--r--. 2 boinc boinc    590102 Nov 25 02:49 input.tar.gz
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc 932822243 Nov 26 03:45 HITS.pool.root.1
[2025-11-26 03:46:55] -rw-------. 1 boinc boinc  14510080 Nov 26 03:46 result.tar.gz
03:46:57 (27204): run_atlas exited; CPU time 348657.029532
03:46:57 (27204): called boinc_finish(0)

</stderr_txt>
]]>

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