Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:05:19 (1625569): wrapper (7.7.26015): starting
21:05:19 (1625569): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 21:05:19] Arguments: --nthreads 3
[2025-11-27 21:05:19] Threads: 3
[2025-11-27 21:05:19] Checking for CVMFS
[2025-11-27 21:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:05:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:05:19] 2.9.2.0 4064095 13236 91924 153383 2 81 10648050 36864000 0 130560 0 4893375 99.942 654141 5444 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 21:05:19] CVMFS is ok
[2025-11-27 21:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:05:19] Further information can be found at the LHC@home message board.
[2025-11-27 21:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:05:19] Checking for apptainer binary...
[2025-11-27 21:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:05:19] Running /usr/bin/apptainer --version
[2025-11-27 21:05:19] apptainer version 1.4.1-1.1
[2025-11-27 21:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:05:19] thA371a
[2025-11-27 21:05:19] apptainer works
[2025-11-27 21:05:19] Set ATHENA_PROC_NUMBER=3
[2025-11-27 21:05:19] Set ATHENA_CORE_NUMBER=3
[2025-11-27 21:05:19] Starting ATLAS job with PandaID=6894291407
[2025-11-27 21:05:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:21:06]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:21:06] 2025-11-28 04:20:15,661 | INFO     | did not find any defunct processes belonging to 1635742
[2025-11-28 05:21:06] 2025-11-28 04:20:15,662 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:21:06] 2025-11-28 04:20:15,662 | INFO     | ready for new job
[2025-11-28 05:21:06] 2025-11-28 04:20:15,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:21:06] 2025-11-28 04:20:15,663 | INFO     | ***************************************
[2025-11-28 05:21:06] 2025-11-28 04:20:15,663 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:21:06] 2025-11-28 04:20:15,663 | INFO     | ***************************************
[2025-11-28 05:21:06] 2025-11-28 04:20:15,663 | INFO     | 
[2025-11-28 05:21:06] 2025-11-28 04:20:15,663 | INFO     | architecture information:
[2025-11-28 05:21:06] 2025-11-28 04:20:15,664 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:21:06] 2025-11-28 04:20:15,673 | INFO     | cat /etc/os-release:
[2025-11-28 05:21:06] NAME="CentOS Linux"
[2025-11-28 05:21:06] VERSION="7 (Core)"
[2025-11-28 05:21:06] ID="centos"
[2025-11-28 05:21:06] ID_LIKE="rhel fedora"
[2025-11-28 05:21:06] VERSION_ID="7"
[2025-11-28 05:21:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:21:06] ANSI_COLOR="0;31"
[2025-11-28 05:21:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:21:06] HOME_URL="https://www.centos.org/"
[2025-11-28 05:21:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:21:06] 
[2025-11-28 05:21:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:21:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:21:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:21:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:21:06] 
[2025-11-28 05:21:06] 2025-11-28 04:20:15,673 | INFO     | ***************************************
[2025-11-28 05:21:06] 2025-11-28 04:20:16,176 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 05:21:06] 2025-11-28 04:20:16,189 | INFO     | sufficient remaining disk space (243334643712 B)
[2025-11-28 05:21:06] 2025-11-28 04:20:16,190 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:21:06] 2025-11-28 04:20:16,190 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:21:06] 2025-11-28 04:20:16,190 | INFO     | update_server=False
[2025-11-28 05:21:06] 2025-11-28 04:20:16,190 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:21:06] 2025-11-28 04:20:16,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:21:06] 2025-11-28 04:20:16,371 | INFO     | all job control threads have been joined
[2025-11-28 05:21:06] 2025-11-28 04:20:16,663 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 05:21:06] 2025-11-28 04:20:16,663 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 05:21:06] 2025-11-28 04:20:16,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:21:06] 2025-11-28 04:20:16,663 | INFO     | will abort loop
[2025-11-28 05:21:06] 2025-11-28 04:20:17,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:21:06] 2025-11-28 04:20:17,106 | INFO     | all data control threads have been joined
[2025-11-28 05:21:06] 2025-11-28 04:20:17,195 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:17,306 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:17,307 | INFO     | all payload control threads have been joined
[2025-11-28 05:21:06] 2025-11-28 04:20:17,320 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:17,377 | INFO     | [job] control thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:17,669 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:17,931 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,073 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,111 | INFO     | [data] control thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,124 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,312 | INFO     | [payload] control thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,590 | INFO     | [job] validate thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:18,644 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:19,083 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:19,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:21:06] 2025-11-28 04:20:20,172 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:20,197 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:24,251 [wrapper] supervise_pilot (15 min periods counter: 34)
[2025-11-28 05:21:06] 2025-11-28 04:20:26,978 | INFO     | job.realtimelogging is not enabled
[2025-11-28 05:21:06] 2025-11-28 04:20:27,984 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:21:06] 2025-11-28 04:20:47,148 | INFO     | PID=1629299 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 05:21:06] 2025-11-28 04:20:47,148 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:21:06] 2025-11-28 04:20:47,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:21:06] 2025-11-28 04:20:47,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:21:06] 2025-11-28 04:20:59,722 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:21:06] 2025-11-28 04:21:01,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699651266368)>', '<ExcThread(monitor, started 139699171616512)>']
[2025-11-28 05:21:06] 2025-11-28 04:21:01,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:21:06] 2025-11-28 04:21:01,221 | INFO     | [monitor] control thread has ended
[2025-11-28 05:21:06] 2025-11-28 04:21:06,086 | INFO     | all workflow threads have been joined
[2025-11-28 05:21:06] 2025-11-28 04:21:06,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:21:06] 2025-11-28 04:21:06,086 | INFO     | traces error code: 0
[2025-11-28 05:21:06] 2025-11-28 04:21:06,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:21:06] 2025-11-28 04:21:06,137 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:21:06] 2025-11-28 04:21:06,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:21:06] 2025-11-28 04:21:06,142 [wrapper] pilotpid: 1629299
[2025-11-28 05:21:06] 2025-11-28 04:21:06,144 [wrapper] Pilot exit status: 0
[2025-11-28 05:21:06] 2025-11-28 04:21:06,151 [wrapper] pandaids: 6894291407
[2025-11-28 05:21:06] 2025-11-28 04:21:06,167 [wrapper] cleanup supervisor_pilot 1691261 1629300
[2025-11-28 05:21:06] 2025-11-28 04:21:06,169 [wrapper] Test setup, not cleaning
[2025-11-28 05:21:06] 2025-11-28 04:21:06,172 [wrapper] apfmon messages muted
[2025-11-28 05:21:06] 2025-11-28 04:21:06,174 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:21:06] 2025-11-28 04:21:06,176 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:21:06]  *** Error codes and diagnostics ***
[2025-11-28 05:21:06]     "exeErrorCode": 0,
[2025-11-28 05:21:06]     "exeErrorDiag": "",
[2025-11-28 05:21:06]     "pilotErrorCode": 0,
[2025-11-28 05:21:06]     "pilotErrorDiag": "",
[2025-11-28 05:21:06]  *** Listing of results directory ***
[2025-11-28 05:21:06] total 1320324
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc    576529 Nov 21 13:04 pilot3.tar.gz
[2025-11-28 05:21:06] -rwx------ 1 boinc boinc     36292 Nov 21 13:15 runpilot2-wrapper.sh
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc      5112 Nov 21 13:15 queuedata.json
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:21:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:05 run_atlas
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:05 job.xml
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc 410124702 Nov 27 21:05 EVNT.47493127._002442.pool.root.1
[2025-11-28 05:21:06] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:05 shared
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc    590102 Nov 27 21:05 input.tar.gz
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:05 start_atlas.sh
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:05 boinc_setup_complete
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc      6441 Nov 27 21:05 init_data.xml
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:05 boinc_lockfile
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc      2784 Nov 27 21:05 pandaJob.out
[2025-11-28 05:21:06] -rw------- 1 boinc boinc    991191 Nov 27 21:05 agis_schedconf.cvmfs.json
[2025-11-28 05:21:06] drwx------ 5 boinc boinc      4096 Nov 27 21:05 pilot3
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc       532 Nov 28 05:16 boinc_task_state.xml
[2025-11-28 05:21:06] -rw------- 1 boinc boinc 927267558 Nov 28 05:19 HITS.47533967._004140.pool.root.1
[2025-11-28 05:21:06] -rw------- 1 boinc boinc        95 Nov 28 05:19 pilot_heartbeat.json
[2025-11-28 05:21:06] -rw------- 1 boinc boinc      1038 Nov 28 05:20 memory_monitor_summary.json
[2025-11-28 05:21:06] -rw------- 1 boinc boinc   1516240 Nov 28 05:20 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:21:06] -rw------- 1 boinc boinc   1181554 Nov 28 05:20 log.47533967._004140.job.log.tgz.1
[2025-11-28 05:21:06] -rw------- 1 boinc boinc      8569 Nov 28 05:20 heartbeat.json
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc        28 Nov 28 05:20 wrapper_checkpoint.txt
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc      8192 Nov 28 05:20 boinc_mmap_file
[2025-11-28 05:21:06] -rw------- 1 boinc boinc      5010 Nov 28 05:21 pilotlog.txt
[2025-11-28 05:21:06] -rw------- 1 boinc boinc   4178423 Nov 28 05:21 log.47533967._004140.job.log.1
[2025-11-28 05:21:06] -rw------- 1 boinc boinc       353 Nov 28 05:21 output.list
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc       620 Nov 28 05:21 runtime_log
[2025-11-28 05:21:06] -rw------- 1 boinc boinc   5376000 Nov 28 05:21 result.tar.gz
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc      8903 Nov 28 05:21 runtime_log.err
[2025-11-28 05:21:06] -rw------- 1 boinc boinc       666 Nov 28 05:21 UpfNDmbEfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLPJKDmLGFlPo.diag
[2025-11-28 05:21:06] -rw-r--r-- 1 boinc boinc     10291 Nov 28 05:21 stderr.txt
[2025-11-28 05:21:06] HITS file was successfully produced:
[2025-11-28 05:21:06] -rw------- 1 boinc boinc 927267558 Nov 28 05:19 shared/HITS.pool.root.1
[2025-11-28 05:21:06]  *** Contents of shared directory: ***
[2025-11-28 05:21:06] total 1311904
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc 410124702 Nov 27 21:05 ATLAS.root_0
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc    590102 Nov 27 21:05 input.tar.gz
[2025-11-28 05:21:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:05 start_atlas.sh
[2025-11-28 05:21:06] -rw------- 1 boinc boinc 927267558 Nov 28 05:19 HITS.pool.root.1
[2025-11-28 05:21:06] -rw------- 1 boinc boinc   5376000 Nov 28 05:21 result.tar.gz
05:21:28 (1625569): run_atlas exited; CPU time 87758.690210
05:21:28 (1625569): called boinc_finish(0)

</stderr_txt>
]]>

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