Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:38:16 (8347): wrapper (7.7.26015): starting
04:38:16 (8347): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:38:16] Arguments: --nthreads 8
[2025-11-25 04:38:16] Threads: 8
[2025-11-25 04:38:16] Checking for CVMFS
[2025-11-25 04:38:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:38:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:38:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:38:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:38:19] 2.11.2.0 16837 283419 138328 153268 1 180 19943002 25165825 4632 130560 11 120804753 99.869 74091626 3407 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 04:38:19] CVMFS is ok
[2025-11-25 04:38:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:38:19] Checking for apptainer binary...
[2025-11-25 04:38:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:38:19] Running /usr/bin/apptainer --version
[2025-11-25 04:38:19] apptainer version 1.3.2-1.el7
[2025-11-25 04:38:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:38:42] cg-vwn322.simple-grid.lan
[2025-11-25 04:38:42] apptainer works
[2025-11-25 04:38:42] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:38:42] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:38:42] Starting ATLAS job with PandaID=6891478762
[2025-11-25 04:38:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:21:47]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:21:47] 2025-11-26 05:20:50,434 | INFO     | time since job start (92273s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:20:52,411 | INFO     | monitor loop #6196: job 0:6891478762 is in state 'finished'
[2025-11-26 06:21:47] 2025-11-26 05:20:52,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:21:47] 2025-11-26 05:20:52,442 | INFO     | time since job start (92275s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:20:54,455 | INFO     | time since job start (92277s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:20:54,916 | INFO     | monitor loop #6197: job 0:6891478762 is in state 'finished'
[2025-11-26 06:21:47] 2025-11-26 05:20:54,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:21:47] 2025-11-26 05:20:55,674 | INFO     | PID=12163 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:21:47] 2025-11-26 05:20:55,674 | INFO     | .. there are 9 such processes running
[2025-11-26 06:21:47] 2025-11-26 05:20:56,675 | INFO     | time since job start (92279s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:20:57,422 | INFO     | monitor loop #6198: job 0:6891478762 is in state 'finished'
[2025-11-26 06:21:47] 2025-11-26 05:20:57,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:21:47] 2025-11-26 05:20:58,682 | INFO     | time since job start (92281s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:20:59,927 | INFO     | monitor loop #6199: job 0:6891478762 is in state 'finished'
[2025-11-26 06:21:47] 2025-11-26 05:20:59,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:21:47] 2025-11-26 05:21:00,687 | INFO     | time since job start (92283s) is within the limit (172800.0s)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,213 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:21:47] 2025-11-26 05:21:01,214 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 06:21:47] 2025-11-26 05:21:01,216 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891478762/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,217 | INFO     | extracted standard info from prmon json
[2025-11-26 06:21:47] 2025-11-26 05:21:01,217 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:21:47] 2025-11-26 05:21:01,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:21:47] 2025-11-26 05:21:01,269 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:21:47] 2025-11-26 05:21:01,271 | INFO     | sum of square deviations: 1052822114828.42
[2025-11-26 06:21:47] 2025-11-26 05:21:01,365 | INFO     | sum of deviations: 4630383509957.29
[2025-11-26 06:21:47] 2025-11-26 05:21:01,365 | INFO     | mean x: 1764088511.253493
[2025-11-26 06:21:47] 2025-11-26 05:21:01,365 | INFO     | mean y: 2834681.5635395874
[2025-11-26 06:21:47] 2025-11-26 05:21:01,365 | INFO     | intersect: -7755746979.636175
[2025-11-26 06:21:47] 2025-11-26 05:21:01,367 | INFO     | chi2: 25.256760122054956
[2025-11-26 06:21:47] 2025-11-26 05:21:01,369 | INFO     | sum of square deviations: 1042350390763.037
[2025-11-26 06:21:47] 2025-11-26 05:21:01,442 | INFO     | sum of deviations: 5140454858801.654
[2025-11-26 06:21:47] 2025-11-26 05:21:01,443 | INFO     | mean x: 1764088358.7576768
[2025-11-26 06:21:47] 2025-11-26 05:21:01,443 | INFO     | mean y: 2842108.8998664888
[2025-11-26 06:21:47] 2025-11-26 05:21:01,443 | INFO     | intersect: -8696935485.5548
[2025-11-26 06:21:47] 2025-11-26 05:21:01,445 | INFO     | chi2: 21.928526091586924
[2025-11-26 06:21:47] 2025-11-26 05:21:01,445 | INFO     | current chi2=21.928526091586924 (change=13.17759686667697 %)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,445 | INFO     | right removable region: 1497
[2025-11-26 06:21:47] 2025-11-26 05:21:01,448 | INFO     | sum of square deviations: 1042349241523.0366
[2025-11-26 06:21:47] 2025-11-26 05:21:01,532 | INFO     | sum of deviations: 4004527722938.9507
[2025-11-26 06:21:47] 2025-11-26 05:21:01,532 | INFO     | mean x: 1764088663.7576768
[2025-11-26 06:21:47] 2025-11-26 05:21:01,532 | INFO     | mean y: 2843794.481975968
[2025-11-26 06:21:47] 2025-11-26 05:21:01,532 | INFO     | intersect: -6774483494.995234
[2025-11-26 06:21:47] 2025-11-26 05:21:01,534 | INFO     | chi2: 20.527061068578213
[2025-11-26 06:21:47] 2025-11-26 05:21:01,535 | INFO     | current chi2=20.527061068578213 (change=18.72646780751039 %)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,535 | INFO     | left removable region: 10
[2025-11-26 06:21:47] 2025-11-26 05:21:01,537 | INFO     | sum of square deviations: 1019555230443.0083
[2025-11-26 06:21:47] 2025-11-26 05:21:01,605 | INFO     | sum of deviations: 4106840641005.814
[2025-11-26 06:21:47] 2025-11-26 05:21:01,605 | INFO     | mean x: 1764088633.2669804
[2025-11-26 06:21:47] 2025-11-26 05:21:01,606 | INFO     | mean y: 2860948.4034969737
[2025-11-26 06:21:47] 2025-11-26 05:21:01,606 | INFO     | intersect: -7103012943.577102
[2025-11-26 06:21:47] 2025-11-26 05:21:01,608 | INFO     | chi2: 12.913824318758657
[2025-11-26 06:21:47] 2025-11-26 05:21:01,608 | INFO     | current memory leak: 4.03 B/s (using 1487 data points, chi2=12.91)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,609 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | ..............................
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . Timing measurements:
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . get job = 0 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . initial setup = 8 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . payload setup = 162 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . stage-in = 0 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . payload execution = 91813 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . stage-out = 5 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,610 | INFO     | . log creation = 2 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,611 | INFO     | ..............................
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | 
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | job summary report
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | --------------------------------------------------
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | PanDA job id: 6891478762
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | task id: 47493049
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | errors: (none)
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:21:47] 2025-11-26 05:21:01,972 | INFO     | pilot state: finished 
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | transexitcode: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | exeerrorcode: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | exeerrordiag: 
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | exitcode: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | exitmsg: OK
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | cpuconsumptiontime: 339978 s
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | nevents: 1000
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | neventsw: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | pid: 18762
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | pgrp: 18762
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | corecount: 8
[2025-11-26 06:21:47] 2025-11-26 05:21:01,973 | INFO     | event service: False
[2025-11-26 06:21:47] 2025-11-26 05:21:01,974 | INFO     | sizes: {0: 2283463, 1: 2284148, 2: 2284347, 12: 2284347, 23: 2284375, 34: 2284403, 45: 2284559, 56: 2284587, 66: 2284615, 77: 2284643, 88: 2284699, 98: 2285007, 10
[2025-11-26 06:21:47] 2025-11-26 05:21:01,974 | INFO     | --------------------------------------------------
[2025-11-26 06:21:47] 2025-11-26 05:21:01,974 | INFO     | 
[2025-11-26 06:21:47] 2025-11-26 05:21:01,974 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-26 06:21:47] 2025-11-26 05:21:02,593 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:21:47] 2025-11-26 05:21:02,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:21:47] 2025-11-26 05:21:02,596 | INFO     | job 6891478762 has completed (purged errors)
[2025-11-26 06:21:47] 2025-11-26 05:21:02,596 | INFO     | overall cleanup function is called
[2025-11-26 06:21:47] 2025-11-26 05:21:03,617 | INFO     | --- collectZombieJob: --- 10, [18762]
[2025-11-26 06:21:47] 2025-11-26 05:21:03,617 | INFO     | zombie collector waiting for pid 18762
[2025-11-26 06:21:47] 2025-11-26 05:21:03,617 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:21:47] 2025-11-26 05:21:03,617 | INFO     | collected zombie processes
[2025-11-26 06:21:47] 2025-11-26 05:21:03,617 | INFO     | will attempt to kill all subprocesses of pid=18762
[2025-11-26 06:21:47] 2025-11-26 05:21:03,729 | INFO     | process IDs to be killed: [18762] (in reverse order)
[2025-11-26 06:21:47] 2025-11-26 05:21:04,471 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:21:47] 2025-11-26 05:21:04,471 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:21:47] 2025-11-26 05:21:04,482 | INFO     | did not find any defunct processes belonging to 18762
[2025-11-26 06:21:47] 2025-11-26 05:21:04,492 | INFO     | did not find any defunct processes belonging to 18762
[2025-11-26 06:21:47] 2025-11-26 05:21:04,549 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:21:47] 2025-11-26 05:21:04,549 | INFO     | ready for new job
[2025-11-26 06:21:47] 2025-11-26 05:21:04,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:21:47] 2025-11-26 05:21:04,555 | INFO     | ***************************************
[2025-11-26 06:21:47] 2025-11-26 05:21:04,555 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:21:47] 2025-11-26 05:21:04,556 | INFO     | ***************************************
[2025-11-26 06:21:47] 2025-11-26 05:21:04,556 | INFO     | 
[2025-11-26 06:21:47] 2025-11-26 05:21:04,556 | INFO     | pilot is running in a VM
[2025-11-26 06:21:47] 2025-11-26 05:21:04,556 | INFO     | architecture information:
[2025-11-26 06:21:47] 2025-11-26 05:21:04,567 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:21:47] 2025-11-26 05:21:04,835 | INFO     | cat /etc/os-release:
[2025-11-26 06:21:47] NAME="CentOS Linux"
[2025-11-26 06:21:47] VERSION="7 (Core)"
[2025-11-26 06:21:47] ID="centos"
[2025-11-26 06:21:47] ID_LIKE="rhel fedora"
[2025-11-26 06:21:47] VERSION_ID="7"
[2025-11-26 06:21:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:21:47] ANSI_COLOR="0;31"
[2025-11-26 06:21:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:21:47] HOME_URL="https://www.centos.org/"
[2025-11-26 06:21:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:21:47] 
[2025-11-26 06:21:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:21:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:21:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:21:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:21:47] 
[2025-11-26 06:21:47] 2025-11-26 05:21:04,835 | INFO     | ***************************************
[2025-11-26 06:21:47] 2025-11-26 05:21:05,339 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-26 06:21:47] 2025-11-26 05:21:05,542 | INFO     | sufficient remaining disk space (495517171712 B)
[2025-11-26 06:21:47] 2025-11-26 05:21:05,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:21:47] 2025-11-26 05:21:05,542 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:21:47] 2025-11-26 05:21:05,542 | INFO     | update_server=False
[2025-11-26 06:21:47] 2025-11-26 05:21:05,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:21:47] 2025-11-26 05:21:05,694 | INFO     | all payload control threads have been joined
[2025-11-26 06:21:47] 2025-11-26 05:21:05,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:21:47] 2025-11-26 05:21:05,944 | INFO     | aborting loop
[2025-11-26 06:21:47] 2025-11-26 05:21:06,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:21:47] 2025-11-26 05:21:06,212 | INFO     | all data control threads have been joined
[2025-11-26 06:21:47] 2025-11-26 05:21:06,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:21:47] 2025-11-26 05:21:06,549 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:06,564 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:06,700 | INFO     | [payload] control thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:06,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:21:47] 2025-11-26 05:21:06,950 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,080 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,103 | INFO     | all job control threads have been joined
[2025-11-26 06:21:47] 2025-11-26 05:21:07,111 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,218 | INFO     | [data] control thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,528 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,770 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:07,781 | INFO     | [job] validate thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:08,008 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:08,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:08,109 | INFO     | [job] control thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:08,113 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:10,300 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:21:47] 2025-11-26 05:21:33,894 | INFO     | PID=12163 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:21:47] 2025-11-26 05:21:33,894 | INFO     | .. there are 9 such processes running
[2025-11-26 06:21:47] 2025-11-26 05:21:33,894 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:21:47] 2025-11-26 05:21:33,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:21:47] 2025-11-26 05:21:33,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:21:47] 2025-11-26 05:21:37,669 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:21:47] 2025-11-26 05:21:38,913 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337938630464)>', '<ExcThread(monitor, started 140337469167360)>']
[2025-11-26 06:21:47] 2025-11-26 05:21:38,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:21:47] 2025-11-26 05:21:38,924 | INFO     | [monitor] control thread has ended
[2025-11-26 06:21:47] 2025-11-26 05:21:43,939 | INFO     | all workflow threads have been joined
[2025-11-26 06:21:47] 2025-11-26 05:21:43,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:21:47] 2025-11-26 05:21:43,939 | INFO     | traces error code: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:43,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:21:47] 2025-11-26 05:21:44,187 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:21:47] 2025-11-26 05:21:44,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:21:47] 2025-11-26 05:21:44,400 [wrapper] pilotpid: 12163
[2025-11-26 06:21:47] 2025-11-26 05:21:44,512 [wrapper] Pilot exit status: 0
[2025-11-26 06:21:47] 2025-11-26 05:21:44,944 [wrapper] pandaids: 6891478762
[2025-11-26 06:21:47] 2025-11-26 05:21:46,107 [wrapper] cleanup supervisor_pilot 21626 12164
[2025-11-26 06:21:47] 2025-11-26 05:21:46,201 [wrapper] Test setup, not cleaning
[2025-11-26 06:21:47] 2025-11-26 05:21:46,312 [wrapper] apfmon messages muted
[2025-11-26 06:21:47] 2025-11-26 05:21:46,425 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:21:47] 2025-11-26 05:21:46,497 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:21:47]  *** Error codes and diagnostics ***
[2025-11-26 06:21:47]     "exeErrorCode": 0,
[2025-11-26 06:21:47]     "exeErrorDiag": "",
[2025-11-26 06:21:47]     "pilotErrorCode": 0,
[2025-11-26 06:21:47]     "pilotErrorDiag": "",
[2025-11-26 06:21:47]  *** Listing of results directory ***
[2025-11-26 06:21:47] total 1338212
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc    576529 Nov 18 13:21 pilot3.tar.gz
[2025-11-26 06:21:47] -rwx------. 1 boinc boinc     36292 Nov 18 13:54 runpilot2-wrapper.sh
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc      5112 Nov 18 13:54 queuedata.json
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc       100 Nov 25 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:21:47] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 04:38 run_atlas
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc       105 Nov 25 04:38 job.xml
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc      6390 Nov 25 04:38 init_data.xml
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc 411251585 Nov 25 04:38 EVNT.47493047._000002.pool.root.1
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc     15120 Nov 25 04:38 start_atlas.sh
[2025-11-26 06:21:47] drwxrwx--x. 2 boinc boinc        68 Nov 25 04:38 shared
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc    590091 Nov 25 04:38 input.tar.gz
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc         0 Nov 25 04:38 boinc_lockfile
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc      2769 Nov 25 04:38 pandaJob.out
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc    991801 Nov 25 04:42 agis_schedconf.cvmfs.json
[2025-11-26 06:21:47] drwx------. 5 boinc boinc      4096 Nov 25 04:42 pilot3
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc       533 Nov 26 05:57 boinc_task_state.xml
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc 925309064 Nov 26 06:18 HITS.47493049._000020.pool.root.1
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc      1031 Nov 26 06:19 memory_monitor_summary.json
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc   1516240 Nov 26 06:19 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc   2582837 Nov 26 06:19 log.47493049._000020.job.log.tgz.1
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc      8637 Nov 26 06:21 heartbeat.json
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc        95 Nov 26 06:21 pilot_heartbeat.json
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc      4884 Nov 26 06:21 pilotlog.txt
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc  12345572 Nov 26 06:21 log.47493049._000020.job.log.1
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc        29 Nov 26 06:21 wrapper_checkpoint.txt
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc      8192 Nov 26 06:21 boinc_mmap_file
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc       353 Nov 26 06:21 output.list
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc       620 Nov 26 06:21 runtime_log
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc  14950400 Nov 26 06:21 result.tar.gz
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc      8703 Nov 26 06:21 runtime_log.err
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc       662 Nov 26 06:21 DLRLDmPPaf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpBFKDmRoNfDn.diag
[2025-11-26 06:21:47] -rw-r--r--. 1 boinc boinc     21502 Nov 26 06:21 stderr.txt
[2025-11-26 06:21:47] HITS file was successfully produced:
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc 925309064 Nov 26 06:18 shared/HITS.pool.root.1
[2025-11-26 06:21:47]  *** Contents of shared directory: ***
[2025-11-26 06:21:47] total 1320436
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc 411251585 Nov 25 04:38 ATLAS.root_0
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc     15120 Nov 25 04:38 start_atlas.sh
[2025-11-26 06:21:47] -rw-r--r--. 2 boinc boinc    590091 Nov 25 04:38 input.tar.gz
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc 925309064 Nov 26 06:18 HITS.pool.root.1
[2025-11-26 06:21:47] -rw-------. 1 boinc boinc  14950400 Nov 26 06:21 result.tar.gz
06:21:49 (8347): run_atlas exited; CPU time 340589.442607
06:21:49 (8347): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN