Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:34:21 (32710): wrapper (7.7.26015): starting
21:34:21 (32710): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:34:21] Arguments: --nthreads 8
[2025-11-24 21:34:21] Threads: 8
[2025-11-24 21:34:21] Checking for CVMFS
[2025-11-24 21:34:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:34:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:34:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:34:24] 2.11.2.0 30743 79302 110392 153258 2 84 15901729 25165824 4632 130560 8 23320022 99.865 13519769 1765 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 21:34:24] CVMFS is ok
[2025-11-24 21:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:34:24] Checking for apptainer binary...
[2025-11-24 21:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:34:24] Running /usr/bin/apptainer --version
[2025-11-24 21:34:25] apptainer version 1.3.2-1.el7
[2025-11-24 21:34:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:34:48] cg-vwn349.simple-grid.lan
[2025-11-24 21:34:48] apptainer works
[2025-11-24 21:34:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:34:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:34:48] Starting ATLAS job with PandaID=6894265675
[2025-11-24 21:34:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:52:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:52:32] 2025-11-25 21:51:43,514 | INFO     | time since job start (90804s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:44,871 | INFO     | monitor loop #6095: job 0:6894265675 is in state 'finished'
[2025-11-25 22:52:32] 2025-11-25 21:51:44,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:52:32] 2025-11-25 21:51:45,520 | INFO     | time since job start (90806s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:47,377 | INFO     | monitor loop #6096: job 0:6894265675 is in state 'finished'
[2025-11-25 22:52:32] 2025-11-25 21:51:47,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:52:32] 2025-11-25 21:51:47,531 | INFO     | time since job start (90808s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:49,547 | INFO     | time since job start (90810s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:49,882 | INFO     | monitor loop #6097: job 0:6894265675 is in state 'finished'
[2025-11-25 22:52:32] 2025-11-25 21:51:49,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:52:32] 2025-11-25 21:51:51,560 | INFO     | time since job start (90812s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:52,393 | INFO     | monitor loop #6098: job 0:6894265675 is in state 'finished'
[2025-11-25 22:52:32] 2025-11-25 21:51:52,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:52:32] 2025-11-25 21:51:52,725 | INFO     | PID=4092 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 22:52:32] 2025-11-25 21:51:52,725 | INFO     | .. there are 9 such processes running
[2025-11-25 22:52:32] 2025-11-25 21:51:53,342 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:52:32] 2025-11-25 21:51:53,343 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 22:52:32] 2025-11-25 21:51:53,344 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6894265675/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,345 | INFO     | extracted standard info from prmon json
[2025-11-25 22:52:32] 2025-11-25 21:51:53,346 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:52:32] 2025-11-25 21:51:53,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:52:32] 2025-11-25 21:51:53,388 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:52:32] 2025-11-25 21:51:53,390 | INFO     | sum of square deviations: 1003194459336.5715
[2025-11-25 22:52:32] 2025-11-25 21:51:53,488 | INFO     | sum of deviations: 4109457453704.2935
[2025-11-25 22:52:32] 2025-11-25 21:51:53,489 | INFO     | mean x: 1764062291.2258282
[2025-11-25 22:52:32] 2025-11-25 21:51:53,489 | INFO     | mean y: 2828255.966193374
[2025-11-25 22:52:32] 2025-11-25 21:51:53,489 | INFO     | intersect: -7223426697.904621
[2025-11-25 22:52:32] 2025-11-25 21:51:53,491 | INFO     | chi2: 25.275472154035633
[2025-11-25 22:52:32] 2025-11-25 21:51:53,493 | INFO     | sum of square deviations: 993055036126.5348
[2025-11-25 22:52:32] 2025-11-25 21:51:53,578 | INFO     | sum of deviations: 4582003943829.591
[2025-11-25 22:52:32] 2025-11-25 21:51:53,578 | INFO     | mean x: 1764062138.7299864
[2025-11-25 22:52:32] 2025-11-25 21:51:53,578 | INFO     | mean y: 2835361.8758480325
[2025-11-25 22:52:32] 2025-11-25 21:51:53,578 | INFO     | intersect: -8136632626.07093
[2025-11-25 22:52:32] 2025-11-25 21:51:53,580 | INFO     | chi2: 22.25346653146593
[2025-11-25 22:52:32] 2025-11-25 21:51:53,580 | INFO     | current chi2=22.25346653146593 (change=11.95627762817951 %)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,580 | INFO     | right removable region: 1473
[2025-11-25 22:52:32] 2025-11-25 21:51:53,583 | INFO     | sum of square deviations: 993053930196.5352
[2025-11-25 22:52:32] 2025-11-25 21:51:53,654 | INFO     | sum of deviations: 3488864819415.754
[2025-11-25 22:52:32] 2025-11-25 21:51:53,654 | INFO     | mean x: 1764062443.7299864
[2025-11-25 22:52:32] 2025-11-25 21:51:53,654 | INFO     | mean y: 2837588.6275440976
[2025-11-25 22:52:32] 2025-11-25 21:51:53,654 | INFO     | intersect: -6194786943.168107
[2025-11-25 22:52:32] 2025-11-25 21:51:53,658 | INFO     | chi2: 20.463112172699002
[2025-11-25 22:52:32] 2025-11-25 21:51:53,659 | INFO     | current chi2=20.463112172699002 (change=19.0396442527712 %)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,659 | INFO     | left removable region: 10
[2025-11-25 22:52:32] 2025-11-25 21:51:53,661 | INFO     | sum of square deviations: 970987094932.2686
[2025-11-25 22:52:32] 2025-11-25 21:51:53,726 | INFO     | sum of deviations: 3497208674241.8096
[2025-11-25 22:52:32] 2025-11-25 21:51:53,727 | INFO     | mean x: 1764062413.2392344
[2025-11-25 22:52:32] 2025-11-25 21:51:53,727 | INFO     | mean y: 2854909.3691045796
[2025-11-25 22:52:32] 2025-11-25 21:51:53,727 | INFO     | intersect: -6350776777.069047
[2025-11-25 22:52:32] 2025-11-25 21:51:53,729 | INFO     | chi2: 12.836477977302055
[2025-11-25 22:52:32] 2025-11-25 21:51:53,729 | INFO     | current memory leak: 3.60 B/s (using 1463 data points, chi2=12.84)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,731 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | ..............................
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . Timing measurements:
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . get job = 0 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . initial setup = 3 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . payload setup = 168 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . stage-in = 0 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . payload execution = 90341 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . stage-out = 5 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,732 | INFO     | . log creation = 2 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,733 | INFO     | ..............................
[2025-11-25 22:52:32] 2025-11-25 21:51:53,754 | INFO     | time since job start (90814s) is within the limit (172800.0s)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | 
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | job summary report
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | --------------------------------------------------
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | PanDA job id: 6894265675
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | task id: 47533967
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | errors: (none)
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | pilot state: finished 
[2025-11-25 22:52:32] 2025-11-25 21:51:53,857 | INFO     | transexitcode: 0
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | exeerrorcode: 0
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | exeerrordiag: 
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | exitcode: 0
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | exitmsg: OK
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | cpuconsumptiontime: 337877 s
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | nevents: 1000
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | neventsw: 0
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | pid: 10588
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | pgrp: 10588
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | corecount: 8
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | event service: False
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | sizes: {0: 2284140, 1: 2284339, 2: 2284339, 12: 2284367, 23: 2284395, 34: 2284423, 44: 2284579, 55: 2284607, 66: 2284635, 77: 2284663, 87: 2284719, 96: 2285289, 98
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | --------------------------------------------------
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | 
[2025-11-25 22:52:32] 2025-11-25 21:51:53,858 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-25 22:52:32] 2025-11-25 21:51:54,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:52:32] 2025-11-25 21:51:54,357 | INFO     | job 6894265675 has completed (purged errors)
[2025-11-25 22:52:32] 2025-11-25 21:51:54,357 | INFO     | overall cleanup function is called
[2025-11-25 22:52:32] 2025-11-25 21:51:55,377 | INFO     | --- collectZombieJob: --- 10, [10588]
[2025-11-25 22:52:32] 2025-11-25 21:51:55,377 | INFO     | zombie collector waiting for pid 10588
[2025-11-25 22:52:32] 2025-11-25 21:51:55,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:52:32] 2025-11-25 21:51:55,377 | INFO     | collected zombie processes
[2025-11-25 22:52:32] 2025-11-25 21:51:55,377 | INFO     | will attempt to kill all subprocesses of pid=10588
[2025-11-25 22:52:32] 2025-11-25 21:51:55,492 | INFO     | process IDs to be killed: [10588] (in reverse order)
[2025-11-25 22:52:32] 2025-11-25 21:51:56,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:52:32] 2025-11-25 21:51:56,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:52:32] 2025-11-25 21:51:56,538 | INFO     | did not find any defunct processes belonging to 10588
[2025-11-25 22:52:32] 2025-11-25 21:51:56,541 | INFO     | did not find any defunct processes belonging to 10588
[2025-11-25 22:52:32] 2025-11-25 21:51:56,588 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:52:32] 2025-11-25 21:51:56,589 | INFO     | ready for new job
[2025-11-25 22:52:32] 2025-11-25 21:51:56,589 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:52:32] 2025-11-25 21:51:56,596 | INFO     | ***************************************
[2025-11-25 22:52:32] 2025-11-25 21:51:56,596 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:52:32] 2025-11-25 21:51:56,596 | INFO     | ***************************************
[2025-11-25 22:52:32] 2025-11-25 21:51:56,596 | INFO     | 
[2025-11-25 22:52:32] 2025-11-25 21:51:56,597 | INFO     | pilot is running in a VM
[2025-11-25 22:52:32] 2025-11-25 21:51:56,597 | INFO     | architecture information:
[2025-11-25 22:52:32] 2025-11-25 21:51:56,607 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:52:32] 2025-11-25 21:51:56,794 | INFO     | cat /etc/os-release:
[2025-11-25 22:52:32] NAME="CentOS Linux"
[2025-11-25 22:52:32] VERSION="7 (Core)"
[2025-11-25 22:52:32] ID="centos"
[2025-11-25 22:52:32] ID_LIKE="rhel fedora"
[2025-11-25 22:52:32] VERSION_ID="7"
[2025-11-25 22:52:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:52:32] ANSI_COLOR="0;31"
[2025-11-25 22:52:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:52:32] HOME_URL="https://www.centos.org/"
[2025-11-25 22:52:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:52:32] 
[2025-11-25 22:52:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:52:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:52:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:52:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:52:32] 
[2025-11-25 22:52:32] 2025-11-25 21:51:56,794 | INFO     | ***************************************
[2025-11-25 22:52:32] 2025-11-25 21:51:57,298 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-25 22:52:32] 2025-11-25 21:51:57,508 | INFO     | sufficient remaining disk space (495125004288 B)
[2025-11-25 22:52:32] 2025-11-25 21:51:57,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:52:32] 2025-11-25 21:51:57,509 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:52:32] 2025-11-25 21:51:57,509 | INFO     | update_server=False
[2025-11-25 22:52:32] 2025-11-25 21:51:57,509 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:52:32] 2025-11-25 21:51:57,573 | INFO     | all job control threads have been joined
[2025-11-25 22:52:32] 2025-11-25 21:51:57,684 | INFO     | all data control threads have been joined
[2025-11-25 22:52:32] 2025-11-25 21:51:57,754 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:52:32] 2025-11-25 21:51:58,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:52:32] 2025-11-25 21:51:58,427 | INFO     | aborting loop
[2025-11-25 22:52:32] 2025-11-25 21:51:58,515 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,579 | INFO     | [job] control thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,602 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,619 | INFO     | all payload control threads have been joined
[2025-11-25 22:52:32] 2025-11-25 21:51:58,690 | INFO     | [data] control thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,871 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:58,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:52:32] 2025-11-25 21:51:58,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:52:32] 2025-11-25 21:51:59,088 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,113 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,394 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,433 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,625 | INFO     | [payload] control thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,684 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,859 | INFO     | [job] validate thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:51:59,877 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:52:00,321 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:52:32] 2025-11-25 21:52:00,942 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:52:04,330 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:52:32] 2025-11-25 21:52:04,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843095287616)>', '<ExcThread(monitor, started 139842474186496)>']
[2025-11-25 22:52:32] 2025-11-25 21:52:09,450 | INFO     | all workflow threads have been joined
[2025-11-25 22:52:32] 2025-11-25 21:52:09,450 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:52:32] 2025-11-25 21:52:09,450 | INFO     | traces error code: 0
[2025-11-25 22:52:32] 2025-11-25 21:52:09,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:52:32] 2025-11-25 21:52:26,963 | INFO     | PID=4092 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 22:52:32] 2025-11-25 21:52:26,964 | INFO     | .. there are 9 such processes running
[2025-11-25 22:52:32] 2025-11-25 21:52:26,964 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:52:32] 2025-11-25 21:52:26,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:52:32] 2025-11-25 21:52:26,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:52:32] 2025-11-25 21:52:26,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:52:32] 2025-11-25 21:52:26,965 | INFO     | [monitor] control thread has ended
[2025-11-25 22:52:32] 2025-11-25 21:52:27,387 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:52:32] 2025-11-25 21:52:27,507 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:52:32] 2025-11-25 21:52:27,563 [wrapper] pilotpid: 4092
[2025-11-25 22:52:32] 2025-11-25 21:52:27,637 [wrapper] Pilot exit status: 0
[2025-11-25 22:52:32] 2025-11-25 21:52:28,070 [wrapper] pandaids: 6894265675
[2025-11-25 22:52:32] 2025-11-25 21:52:28,936 [wrapper] cleanup supervisor_pilot  4900 4093
[2025-11-25 22:52:32] 2025-11-25 21:52:29,041 [wrapper] Test setup, not cleaning
[2025-11-25 22:52:32] 2025-11-25 21:52:29,131 [wrapper] apfmon messages muted
[2025-11-25 22:52:32] 2025-11-25 21:52:29,249 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:52:32] 2025-11-25 21:52:29,365 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:52:32]  *** Error codes and diagnostics ***
[2025-11-25 22:52:32]     "exeErrorCode": 0,
[2025-11-25 22:52:32]     "exeErrorDiag": "",
[2025-11-25 22:52:32]     "pilotErrorCode": 0,
[2025-11-25 22:52:32]     "pilotErrorDiag": "",
[2025-11-25 22:52:32]  *** Listing of results directory ***
[2025-11-25 22:52:32] total 1324248
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:56 pilot3.tar.gz
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc      5112 Nov 21 06:06 queuedata.json
[2025-11-25 22:52:32] -rwx------. 1 boinc boinc     36292 Nov 21 06:07 runpilot2-wrapper.sh
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc       100 Nov 24 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:52:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 21:34 run_atlas
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc       105 Nov 24 21:34 job.xml
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc 409265729 Nov 24 21:34 EVNT.47493127._002219.pool.root.1
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:34 start_atlas.sh
[2025-11-25 22:52:32] drwxrwx--x. 2 boinc boinc        68 Nov 24 21:34 shared
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc    590106 Nov 24 21:34 input.tar.gz
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc      6393 Nov 24 21:34 init_data.xml
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc         0 Nov 24 21:34 boinc_lockfile
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc      2786 Nov 24 21:34 pandaJob.out
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc    991801 Nov 24 21:38 agis_schedconf.cvmfs.json
[2025-11-25 22:52:32] drwx------. 5 boinc boinc      4096 Nov 24 21:38 pilot3
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc       533 Nov 25 22:26 boinc_task_state.xml
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc 913572967 Nov 25 22:48 HITS.47533967._001905.pool.root.1
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc      1031 Nov 25 22:49 memory_monitor_summary.json
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc   1516240 Nov 25 22:50 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc   2553543 Nov 25 22:50 log.47533967._001905.job.log.tgz.1
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc        95 Nov 25 22:51 pilot_heartbeat.json
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc      8628 Nov 25 22:51 heartbeat.json
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc       819 Nov 25 22:52 pilotlog.txt
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc  12087337 Nov 25 22:52 log.47533967._001905.job.log.1
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc       353 Nov 25 22:52 output.list
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc       620 Nov 25 22:52 runtime_log
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc  14663680 Nov 25 22:52 result.tar.gz
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc      8192 Nov 25 22:52 boinc_mmap_file
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc        29 Nov 25 22:52 wrapper_checkpoint.txt
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc      8833 Nov 25 22:52 runtime_log.err
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc       662 Nov 25 22:52 f6RLDmYXYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmKHKDmGk58Mm.diag
[2025-11-25 22:52:32] -rw-r--r--. 1 boinc boinc     21443 Nov 25 22:52 stderr.txt
[2025-11-25 22:52:32] HITS file was successfully produced:
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc 913572967 Nov 25 22:48 shared/HITS.pool.root.1
[2025-11-25 22:52:32]  *** Contents of shared directory: ***
[2025-11-25 22:52:32] total 1306756
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc 409265729 Nov 24 21:34 ATLAS.root_0
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:34 start_atlas.sh
[2025-11-25 22:52:32] -rw-r--r--. 2 boinc boinc    590106 Nov 24 21:34 input.tar.gz
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc 913572967 Nov 25 22:48 HITS.pool.root.1
[2025-11-25 22:52:32] -rw-------. 1 boinc boinc  14663680 Nov 25 22:52 result.tar.gz
22:52:33 (32710): run_atlas exited; CPU time 338470.765006
22:52:33 (32710): called boinc_finish(0)

</stderr_txt>
]]>

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