Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:36:30 (9772): wrapper (7.7.26015): starting
01:36:30 (9772): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:36:30] Arguments: --nthreads 8
[2025-11-25 01:36:30] Threads: 8
[2025-11-25 01:36:30] Checking for CVMFS
[2025-11-25 01:36:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:36:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:36:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:36:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:36:33] 2.11.2.0 12000 220378 135816 153264 1 84 21811821 25165825 1027 130560 11 106293124 99.905 44817996 3029 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:36:33] CVMFS is ok
[2025-11-25 01:36:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:36:33] Checking for apptainer binary...
[2025-11-25 01:36:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:36:33] Running /usr/bin/apptainer --version
[2025-11-25 01:36:33] apptainer version 1.3.2-1.el7
[2025-11-25 01:36:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:36:43] cg-vwn246.simple-grid.lan
[2025-11-25 01:36:43] apptainer works
[2025-11-25 01:36:43] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:36:43] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:36:44] Starting ATLAS job with PandaID=6893886571
[2025-11-25 01:36:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:29:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:29:16] 2025-11-26 01:28:36,648 | INFO     | this job has now completed (state=finished)
[2025-11-26 02:29:16] 2025-11-26 01:28:36,648 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 02:29:16] 2025-11-26 01:28:36,648 | INFO     | log transfer has been attempted: DONE
[2025-11-26 02:29:16] 2025-11-26 01:28:36,648 | INFO     | job 6893886571 has finished - writing final server update
[2025-11-26 02:29:16] 2025-11-26 01:28:36,649 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 02:29:16] 2025-11-26 01:28:36,650 | INFO     | executing command: lscpu
[2025-11-26 02:29:16] 2025-11-26 01:28:36,752 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:29:16] 2025-11-26 01:28:37,089 | INFO     | monitor loop #5966: job 0:6893886571 is in state 'finished'
[2025-11-26 02:29:16] 2025-11-26 01:28:37,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:29:16] 2025-11-26 01:28:38,383 | INFO     | time since job start (89236s) is within the limit (172800.0s)
[2025-11-26 02:29:16] 2025-11-26 01:28:39,594 | INFO     | monitor loop #5967: job 0:6893886571 is in state 'finished'
[2025-11-26 02:29:16] 2025-11-26 01:28:39,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:29:16] 2025-11-26 01:28:40,390 | INFO     | time since job start (89238s) is within the limit (172800.0s)
[2025-11-26 02:29:16] 2025-11-26 01:28:42,099 | INFO     | monitor loop #5968: job 0:6893886571 is in state 'finished'
[2025-11-26 02:29:16] 2025-11-26 01:28:42,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:29:16] 2025-11-26 01:28:42,398 | INFO     | time since job start (89240s) is within the limit (172800.0s)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,422 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:29:16] 2025-11-26 01:28:43,423 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:29:16] 2025-11-26 01:28:43,425 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893886571/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,426 | INFO     | extracted standard info from prmon json
[2025-11-26 02:29:16] 2025-11-26 01:28:43,426 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:29:16] 2025-11-26 01:28:43,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:29:16] 2025-11-26 01:28:43,454 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:29:16] 2025-11-26 01:28:43,457 | INFO     | sum of square deviations: 953176273681.8461
[2025-11-26 02:29:16] 2025-11-26 01:28:43,523 | INFO     | sum of deviations: 4193900896969.0137
[2025-11-26 02:29:16] 2025-11-26 01:28:43,524 | INFO     | mean x: 1764076147.7455297
[2025-11-26 02:29:16] 2025-11-26 01:28:43,524 | INFO     | mean y: 2836222.0027510314
[2025-11-26 02:29:16] 2025-11-26 01:28:43,524 | INFO     | intersect: -7758960564.832782
[2025-11-26 02:29:16] 2025-11-26 01:28:43,526 | INFO     | chi2: 28.956861111206326
[2025-11-26 02:29:16] 2025-11-26 01:28:43,528 | INFO     | sum of square deviations: 943377321361.5621
[2025-11-26 02:29:16] 2025-11-26 01:28:43,599 | INFO     | sum of deviations: 4679516740239.292
[2025-11-26 02:29:16] 2025-11-26 01:28:43,599 | INFO     | mean x: 1764075995.2498274
[2025-11-26 02:29:16] 2025-11-26 01:28:43,599 | INFO     | mean y: 2843781.137336094
[2025-11-26 02:29:16] 2025-11-26 01:28:43,600 | INFO     | intersect: -8747656113.127142
[2025-11-26 02:29:16] 2025-11-26 01:28:43,601 | INFO     | chi2: 25.697194798992008
[2025-11-26 02:29:16] 2025-11-26 01:28:43,602 | INFO     | current chi2=25.697194798992008 (change=11.25697395064973 %)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,602 | INFO     | right removable region: 1448
[2025-11-26 02:29:16] 2025-11-26 01:28:43,604 | INFO     | sum of square deviations: 943376216651.5613
[2025-11-26 02:29:16] 2025-11-26 01:28:43,668 | INFO     | sum of deviations: 3567456045530.364
[2025-11-26 02:29:16] 2025-11-26 01:28:43,669 | INFO     | mean x: 1764076300.2498274
[2025-11-26 02:29:16] 2025-11-26 01:28:43,669 | INFO     | mean y: 2845970.4327122155
[2025-11-26 02:29:16] 2025-11-26 01:28:43,669 | INFO     | intersect: -6668156065.680223
[2025-11-26 02:29:16] 2025-11-26 01:28:43,671 | INFO     | chi2: 23.843483817272514
[2025-11-26 02:29:16] 2025-11-26 01:28:43,671 | INFO     | current chi2=23.843483817272514 (change=17.65860351471221 %)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,671 | INFO     | left removable region: 10
[2025-11-26 02:29:16] 2025-11-26 01:28:43,674 | INFO     | sum of square deviations: 922054325464.7504
[2025-11-26 02:29:16] 2025-11-26 01:28:43,738 | INFO     | sum of deviations: 3592886535689.1616
[2025-11-26 02:29:16] 2025-11-26 01:28:43,739 | INFO     | mean x: 1764076269.759388
[2025-11-26 02:29:16] 2025-11-26 01:28:43,739 | INFO     | mean y: 2864188.876216968
[2025-11-26 02:29:16] 2025-11-26 01:28:43,739 | INFO     | intersect: -6871053868.340867
[2025-11-26 02:29:16] 2025-11-26 01:28:43,741 | INFO     | chi2: 15.721402931484251
[2025-11-26 02:29:16] 2025-11-26 01:28:43,741 | INFO     | current memory leak: 3.90 B/s (using 1438 data points, chi2=15.72)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,743 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,743 | INFO     | ..............................
[2025-11-26 02:29:16] 2025-11-26 01:28:43,743 | INFO     | . Timing measurements:
[2025-11-26 02:29:16] 2025-11-26 01:28:43,743 | INFO     | . get job = 0 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,743 | INFO     | . initial setup = 9 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | . payload setup = 180 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | . stage-in = 0 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | . payload execution = 88835 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | . stage-out = 3 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | . log creation = 1 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,744 | INFO     | ..............................
[2025-11-26 02:29:16] 2025-11-26 01:28:43,891 | INFO     | 
[2025-11-26 02:29:16] 2025-11-26 01:28:43,891 | INFO     | job summary report
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | --------------------------------------------------
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | PanDA job id: 6893886571
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | task id: 47523449
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | errors: (none)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | pilot state: finished 
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | transexitcode: 0
[2025-11-26 02:29:16] 2025-11-26 01:28:43,892 | INFO     | exeerrorcode: 0
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | exeerrordiag: 
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | exitcode: 0
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | exitmsg: OK
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | cpuconsumptiontime: 342617 s
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | nevents: 1000
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | neventsw: 0
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | pid: 19973
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | pgrp: 19973
[2025-11-26 02:29:16] 2025-11-26 01:28:43,893 | INFO     | corecount: 8
[2025-11-26 02:29:16] 2025-11-26 01:28:43,894 | INFO     | event service: False
[2025-11-26 02:29:16] 2025-11-26 01:28:43,894 | INFO     | sizes: {0: 2283476, 1: 2284332, 2: 2284332, 12: 2284360, 23: 2284388, 34: 2284416, 45: 2284572, 55: 2284600, 66: 2284628, 77: 2284656, 87: 2284712, 98: 2285020, 10
[2025-11-26 02:29:16] 2025-11-26 01:28:43,894 | INFO     | --------------------------------------------------
[2025-11-26 02:29:16] 2025-11-26 01:28:43,894 | INFO     | 
[2025-11-26 02:29:16] 2025-11-26 01:28:43,894 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 02:29:16] 2025-11-26 01:28:43,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,929 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,929 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:29:16] 2025-11-26 01:28:43,929 | INFO     | job 6893886571 has completed (purged errors)
[2025-11-26 02:29:16] 2025-11-26 01:28:43,929 | INFO     | overall cleanup function is called
[2025-11-26 02:29:16] 2025-11-26 01:28:44,943 | INFO     | --- collectZombieJob: --- 10, [19973]
[2025-11-26 02:29:16] 2025-11-26 01:28:44,943 | INFO     | zombie collector waiting for pid 19973
[2025-11-26 02:29:16] 2025-11-26 01:28:44,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:29:16] 2025-11-26 01:28:44,943 | INFO     | collected zombie processes
[2025-11-26 02:29:16] 2025-11-26 01:28:44,944 | INFO     | will attempt to kill all subprocesses of pid=19973
[2025-11-26 02:29:16] 2025-11-26 01:28:45,056 | INFO     | process IDs to be killed: [19973] (in reverse order)
[2025-11-26 02:29:16] 2025-11-26 01:28:45,114 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:29:16] 2025-11-26 01:28:45,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:29:16] 2025-11-26 01:28:45,118 | INFO     | did not find any defunct processes belonging to 19973
[2025-11-26 02:29:16] 2025-11-26 01:28:45,121 | INFO     | did not find any defunct processes belonging to 19973
[2025-11-26 02:29:16] 2025-11-26 01:28:45,123 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:29:16] 2025-11-26 01:28:45,123 | INFO     | ready for new job
[2025-11-26 02:29:16] 2025-11-26 01:28:45,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:29:16] 2025-11-26 01:28:45,129 | INFO     | ***************************************
[2025-11-26 02:29:16] 2025-11-26 01:28:45,130 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:29:16] 2025-11-26 01:28:45,130 | INFO     | ***************************************
[2025-11-26 02:29:16] 2025-11-26 01:28:45,130 | INFO     | 
[2025-11-26 02:29:16] 2025-11-26 01:28:45,130 | INFO     | pilot is running in a VM
[2025-11-26 02:29:16] 2025-11-26 01:28:45,131 | INFO     | architecture information:
[2025-11-26 02:29:16] 2025-11-26 01:28:45,131 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:29:16] 2025-11-26 01:28:45,160 | INFO     | cat /etc/os-release:
[2025-11-26 02:29:16] NAME="CentOS Linux"
[2025-11-26 02:29:16] VERSION="7 (Core)"
[2025-11-26 02:29:16] ID="centos"
[2025-11-26 02:29:16] ID_LIKE="rhel fedora"
[2025-11-26 02:29:16] VERSION_ID="7"
[2025-11-26 02:29:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:29:16] ANSI_COLOR="0;31"
[2025-11-26 02:29:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:29:16] HOME_URL="https://www.centos.org/"
[2025-11-26 02:29:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:29:16] 
[2025-11-26 02:29:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:29:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:29:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:29:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:29:16] 
[2025-11-26 02:29:16] 2025-11-26 01:28:45,160 | INFO     | ***************************************
[2025-11-26 02:29:16] 2025-11-26 01:28:45,667 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 02:29:16] 2025-11-26 01:28:45,689 | INFO     | sufficient remaining disk space (495317942272 B)
[2025-11-26 02:29:16] 2025-11-26 01:28:45,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:29:16] 2025-11-26 01:28:45,689 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:29:16] 2025-11-26 01:28:45,689 | INFO     | update_server=False
[2025-11-26 02:29:16] 2025-11-26 01:28:45,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:29:16] 2025-11-26 01:28:45,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:29:16] 2025-11-26 01:28:45,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:29:16] 2025-11-26 01:28:45,690 | INFO     | aborting loop
[2025-11-26 02:29:16] 2025-11-26 01:28:45,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:29:16] 2025-11-26 01:28:46,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:29:16] 2025-11-26 01:28:46,696 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:46,697 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:46,697 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:46,712 | INFO     | [job] validate thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:46,751 | INFO     | all data control threads have been joined
[2025-11-26 02:29:16] 2025-11-26 01:28:46,772 | INFO     | all job control threads have been joined
[2025-11-26 02:29:16] 2025-11-26 01:28:46,915 | INFO     | all payload control threads have been joined
[2025-11-26 02:29:16] 2025-11-26 01:28:47,108 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,488 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,697 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,745 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,753 | INFO     | [data] control thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,775 | INFO     | [job] control thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,887 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,921 | INFO     | [payload] control thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:47,953 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:48,007 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:50,277 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:29:16] 2025-11-26 01:28:58,222 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:29:16] 2025-11-26 01:29:00,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453368239936)>', '<ExcThread(monitor, started 140452787373824)>']
[2025-11-26 02:29:16] 2025-11-26 01:29:05,061 | INFO     | all workflow threads have been joined
[2025-11-26 02:29:16] 2025-11-26 01:29:05,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:29:16] 2025-11-26 01:29:05,062 | INFO     | traces error code: 0
[2025-11-26 02:29:16] 2025-11-26 01:29:05,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:29:16] 2025-11-26 01:29:15,618 | INFO     | PID=13519 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 02:29:16] 2025-11-26 01:29:15,619 | INFO     | .. there are 9 such processes running
[2025-11-26 02:29:16] 2025-11-26 01:29:15,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:29:16] 2025-11-26 01:29:15,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:29:16] 2025-11-26 01:29:15,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:29:16] 2025-11-26 01:29:15,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:29:16] 2025-11-26 01:29:15,620 | INFO     | [monitor] control thread has ended
[2025-11-26 02:29:16] 2025-11-26 01:29:15,831 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:29:16] 2025-11-26 01:29:15,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:29:16] 2025-11-26 01:29:15,851 [wrapper] pilotpid: 13519
[2025-11-26 02:29:16] 2025-11-26 01:29:15,858 [wrapper] Pilot exit status: 0
[2025-11-26 02:29:16] 2025-11-26 01:29:15,890 [wrapper] pandaids: 6893886571
[2025-11-26 02:29:16] 2025-11-26 01:29:15,935 [wrapper] cleanup supervisor_pilot  3918 13520
[2025-11-26 02:29:16] 2025-11-26 01:29:15,951 [wrapper] Test setup, not cleaning
[2025-11-26 02:29:16] 2025-11-26 01:29:15,956 [wrapper] apfmon messages muted
[2025-11-26 02:29:16] 2025-11-26 01:29:15,960 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:29:16] 2025-11-26 01:29:15,962 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:29:16]  *** Error codes and diagnostics ***
[2025-11-26 02:29:16]     "exeErrorCode": 0,
[2025-11-26 02:29:16]     "exeErrorDiag": "",
[2025-11-26 02:29:16]     "pilotErrorCode": 0,
[2025-11-26 02:29:16]     "pilotErrorDiag": "",
[2025-11-26 02:29:16]  *** Listing of results directory ***
[2025-11-26 02:29:16] total 1333592
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 23:26 pilot3.tar.gz
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 23:44 queuedata.json
[2025-11-26 02:29:16] -rwx------. 1 boinc boinc     36292 Nov 20 23:44 runpilot2-wrapper.sh
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:29:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:36 run_atlas
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:36 job.xml
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc      6391 Nov 25 01:36 init_data.xml
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc 411819214 Nov 25 01:36 EVNT.47493127._000958.pool.root.1
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:36 start_atlas.sh
[2025-11-26 02:29:16] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:36 shared
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc    590103 Nov 25 01:36 input.tar.gz
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:36 boinc_lockfile
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc      2783 Nov 25 01:36 pandaJob.out
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc    991801 Nov 25 01:41 agis_schedconf.cvmfs.json
[2025-11-26 02:29:16] drwx------. 5 boinc boinc      4096 Nov 25 01:41 pilot3
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc       533 Nov 26 02:04 boinc_task_state.xml
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc 920974555 Nov 26 02:27 HITS.47523449._009571.pool.root.1
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc      1033 Nov 26 02:28 memory_monitor_summary.json
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc   1516240 Nov 26 02:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc   2530928 Nov 26 02:28 log.47523449._009571.job.log.tgz.1
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc      8626 Nov 26 02:28 heartbeat.json
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:28 wrapper_checkpoint.txt
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:28 boinc_mmap_file
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc        95 Nov 26 02:29 pilot_heartbeat.json
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc       820 Nov 26 02:29 pilotlog.txt
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc  11922876 Nov 26 02:29 log.47523449._009571.job.log.1
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc       353 Nov 26 02:29 output.list
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:29 runtime_log
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc  14469120 Nov 26 02:29 result.tar.gz
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc       662 Nov 26 02:29 WA6MDmKZSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhdIKDmK6ZEAo.diag
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc      8817 Nov 26 02:29 runtime_log.err
[2025-11-26 02:29:16] -rw-r--r--. 1 boinc boinc     21427 Nov 26 02:29 stderr.txt
[2025-11-26 02:29:16] HITS file was successfully produced:
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc 920974555 Nov 26 02:27 shared/HITS.pool.root.1
[2025-11-26 02:29:16]  *** Contents of shared directory: ***
[2025-11-26 02:29:16] total 1316288
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc 411819214 Nov 25 01:36 ATLAS.root_0
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:36 start_atlas.sh
[2025-11-26 02:29:16] -rw-r--r--. 2 boinc boinc    590103 Nov 25 01:36 input.tar.gz
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc 920974555 Nov 26 02:27 HITS.pool.root.1
[2025-11-26 02:29:16] -rw-------. 1 boinc boinc  14469120 Nov 26 02:29 result.tar.gz
02:29:17 (9772): run_atlas exited; CPU time 343047.245429
02:29:17 (9772): called boinc_finish(0)

</stderr_txt>
]]>

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