Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:08 (1769230): wrapper (7.7.26015): starting
00:53:08 (1769230): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 00:53:08] Arguments: --nthreads 3
[2025-11-25 00:53:08] Threads: 3
[2025-11-25 00:53:08] Checking for CVMFS
[2025-11-25 00:53:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:53:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:53:08] 2.9.2.0 528461 8999 88864 153263 3 81 34678593 36864001 0 130560 0 3348690 99.922 481763 6119 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 00:53:08] CVMFS is ok
[2025-11-25 00:53:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:53:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:53:08] Further information can be found at the LHC@home message board.
[2025-11-25 00:53:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:53:08] Checking for apptainer binary...
[2025-11-25 00:53:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:53:08] Running /usr/bin/apptainer --version
[2025-11-25 00:53:08] apptainer version 1.4.1-1.1
[2025-11-25 00:53:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:53:09] magicA246a
[2025-11-25 00:53:09] apptainer works
[2025-11-25 00:53:09] Set ATHENA_PROC_NUMBER=3
[2025-11-25 00:53:09] Set ATHENA_CORE_NUMBER=3
[2025-11-25 00:53:09] Starting ATLAS job with PandaID=6894266011
[2025-11-25 00:53:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:50:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:50:57] 2025-11-25 07:50:26,874 | INFO     | process IDs to be killed: [1779395] (in reverse order)
[2025-11-25 08:50:57] 2025-11-25 07:50:26,899 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:50:57] 2025-11-25 07:50:26,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:50:57] 2025-11-25 07:50:26,901 | INFO     | did not find any defunct processes belonging to 1779395
[2025-11-25 08:50:57] 2025-11-25 07:50:26,902 | INFO     | did not find any defunct processes belonging to 1779395
[2025-11-25 08:50:57] 2025-11-25 07:50:26,902 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:50:57] 2025-11-25 07:50:26,902 | INFO     | ready for new job
[2025-11-25 08:50:57] 2025-11-25 07:50:26,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | ***************************************
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | ***************************************
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | 
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | architecture information:
[2025-11-25 08:50:57] 2025-11-25 07:50:26,904 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:50:57] 2025-11-25 07:50:26,913 | INFO     | cat /etc/os-release:
[2025-11-25 08:50:57] NAME="CentOS Linux"
[2025-11-25 08:50:57] VERSION="7 (Core)"
[2025-11-25 08:50:57] ID="centos"
[2025-11-25 08:50:57] ID_LIKE="rhel fedora"
[2025-11-25 08:50:57] VERSION_ID="7"
[2025-11-25 08:50:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:50:57] ANSI_COLOR="0;31"
[2025-11-25 08:50:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:50:57] HOME_URL="https://www.centos.org/"
[2025-11-25 08:50:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:50:57] 
[2025-11-25 08:50:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:50:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:50:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:50:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:50:57] 
[2025-11-25 08:50:57] 2025-11-25 07:50:26,913 | INFO     | ***************************************
[2025-11-25 08:50:57] 2025-11-25 07:50:27,417 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 08:50:57] 2025-11-25 07:50:27,429 | INFO     | sufficient remaining disk space (266992615424 B)
[2025-11-25 08:50:57] 2025-11-25 07:50:27,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:50:57] 2025-11-25 07:50:27,430 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:50:57] 2025-11-25 07:50:27,430 | INFO     | update_server=False
[2025-11-25 08:50:57] 2025-11-25 07:50:27,430 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:50:57] 2025-11-25 07:50:27,430 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:50:57] 2025-11-25 07:50:27,622 | INFO     | all data control threads have been joined
[2025-11-25 08:50:57] 2025-11-25 07:50:27,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:50:57] 2025-11-25 07:50:27,760 | INFO     | all job control threads have been joined
[2025-11-25 08:50:57] 2025-11-25 07:50:27,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:50:57] 2025-11-25 07:50:27,921 | INFO     | aborting loop
[2025-11-25 08:50:57] 2025-11-25 07:50:28,406 | INFO     | all payload control threads have been joined
[2025-11-25 08:50:57] 2025-11-25 07:50:28,436 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,436 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,628 | INFO     | [data] control thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,629 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,766 | INFO     | [job] control thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:50:57] 2025-11-25 07:50:28,905 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:28,927 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,065 | INFO     | [job] validate thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,135 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,150 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,412 | INFO     | [payload] control thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,828 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:29,879 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:30,867 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:31,692 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:38,383 | INFO     | job.realtimelogging is not enabled
[2025-11-25 08:50:57] 2025-11-25 07:50:39,388 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:50:57] 2025-11-25 07:50:48,760 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:50:57] 2025-11-25 07:50:50,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702884202304)>', '<ExcThread(monitor, started 139702241838848)>']
[2025-11-25 08:50:57] 2025-11-25 07:50:55,232 | INFO     | all workflow threads have been joined
[2025-11-25 08:50:57] 2025-11-25 07:50:55,233 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:50:57] 2025-11-25 07:50:55,233 | INFO     | traces error code: 0
[2025-11-25 08:50:57] 2025-11-25 07:50:55,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | INFO     | PID=1772950 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:50:57] 2025-11-25 07:50:57,100 | INFO     | [monitor] control thread has ended
[2025-11-25 08:50:57] 2025-11-25 07:50:57,149 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:50:57] 2025-11-25 07:50:57,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:50:57] 2025-11-25 07:50:57,154 [wrapper] pilotpid: 1772950
[2025-11-25 08:50:57] 2025-11-25 07:50:57,156 [wrapper] Pilot exit status: 0
[2025-11-25 08:50:57] 2025-11-25 07:50:57,163 [wrapper] pandaids: 6894266011
[2025-11-25 08:50:57] 2025-11-25 07:50:57,179 [wrapper] cleanup supervisor_pilot 1830893 1772951
[2025-11-25 08:50:57] 2025-11-25 07:50:57,182 [wrapper] Test setup, not cleaning
[2025-11-25 08:50:57] 2025-11-25 07:50:57,184 [wrapper] apfmon messages muted
[2025-11-25 08:50:57] 2025-11-25 07:50:57,186 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:50:57] 2025-11-25 07:50:57,188 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:50:57]  *** Error codes and diagnostics ***
[2025-11-25 08:50:57]     "exeErrorCode": 0,
[2025-11-25 08:50:57]     "exeErrorDiag": "",
[2025-11-25 08:50:57]     "pilotErrorCode": 0,
[2025-11-25 08:50:57]     "pilotErrorDiag": "",
[2025-11-25 08:50:57]  *** Listing of results directory ***
[2025-11-25 08:50:57] total 1305980
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:56 pilot3.tar.gz
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:06 queuedata.json
[2025-11-25 08:50:57] -rwx------ 1 boinc boinc     36292 Nov 21 06:07 runpilot2-wrapper.sh
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc       100 Nov 25 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:50:57] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 00:53 run_atlas
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc       105 Nov 25 00:53 job.xml
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc 406552584 Nov 25 00:53 EVNT.47493127._002220.pool.root.1
[2025-11-25 08:50:57] drwxrwx--x 2 boinc boinc      4096 Nov 25 00:53 shared
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc    590107 Nov 25 00:53 input.tar.gz
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:53 start_atlas.sh
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:53 boinc_setup_complete
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc      6448 Nov 25 00:53 init_data.xml
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:53 boinc_lockfile
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc      2786 Nov 25 00:53 pandaJob.out
[2025-11-25 08:50:57] -rw------- 1 boinc boinc    991801 Nov 25 00:53 agis_schedconf.cvmfs.json
[2025-11-25 08:50:57] drwx------ 5 boinc boinc      4096 Nov 25 00:53 pilot3
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc       532 Nov 25 08:47 boinc_task_state.xml
[2025-11-25 08:50:57] -rw------- 1 boinc boinc 916460802 Nov 25 08:50 HITS.47533967._001913.pool.root.1
[2025-11-25 08:50:57] -rw------- 1 boinc boinc      1022 Nov 25 08:50 memory_monitor_summary.json
[2025-11-25 08:50:57] -rw------- 1 boinc boinc   1516227 Nov 25 08:50 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:50:57] -rw------- 1 boinc boinc   1167798 Nov 25 08:50 log.47533967._001913.job.log.tgz.1
[2025-11-25 08:50:57] -rw------- 1 boinc boinc      8569 Nov 25 08:50 heartbeat.json
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc      8192 Nov 25 08:50 boinc_mmap_file
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc        28 Nov 25 08:50 wrapper_checkpoint.txt
[2025-11-25 08:50:57] -rw------- 1 boinc boinc       747 Nov 25 08:50 pilotlog.txt
[2025-11-25 08:50:57] -rw------- 1 boinc boinc        95 Nov 25 08:50 pilot_heartbeat.json
[2025-11-25 08:50:57] -rw------- 1 boinc boinc   4030912 Nov 25 08:50 log.47533967._001913.job.log.1
[2025-11-25 08:50:57] -rw------- 1 boinc boinc       353 Nov 25 08:50 output.list
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc       620 Nov 25 08:50 runtime_log
[2025-11-25 08:50:57] -rw------- 1 boinc boinc   5222400 Nov 25 08:50 result.tar.gz
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc      8918 Nov 25 08:50 runtime_log.err
[2025-11-25 08:50:57] -rw------- 1 boinc boinc       669 Nov 25 08:50 TycLDmYXYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtKHKDmbhtK0n.diag
[2025-11-25 08:50:57] -rw-r--r-- 1 boinc boinc     10404 Nov 25 08:50 stderr.txt
[2025-11-25 08:50:57] HITS file was successfully produced:
[2025-11-25 08:50:57] -rw------- 1 boinc boinc 916460802 Nov 25 08:50 shared/HITS.pool.root.1
[2025-11-25 08:50:57]  *** Contents of shared directory: ***
[2025-11-25 08:50:57] total 1297716
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc 406552584 Nov 25 00:53 ATLAS.root_0
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc    590107 Nov 25 00:53 input.tar.gz
[2025-11-25 08:50:57] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:53 start_atlas.sh
[2025-11-25 08:50:57] -rw------- 1 boinc boinc 916460802 Nov 25 08:50 HITS.pool.root.1
[2025-11-25 08:50:57] -rw------- 1 boinc boinc   5222400 Nov 25 08:50 result.tar.gz
08:50:58 (1769230): run_atlas exited; CPU time 84569.172086
08:50:58 (1769230): called boinc_finish(0)

</stderr_txt>
]]>

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