Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:02 (12374): wrapper (7.7.26015): starting
03:36:02 (12374): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 03:36:02] Arguments: --nthreads 12
[2025-11-22 03:36:02] Threads: 12
[2025-11-22 03:36:02] Checking for CVMFS
[2025-11-22 03:36:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 03:36:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 03:36:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 03:36:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 03:36:02] 2.11.2.0 2933 281690 90800 153165 2 57 11787843 20275201 1 130560 2 126216873 99.962 16993615 14593 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 03:36:02] CVMFS is ok
[2025-11-22 03:36:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 03:36:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 03:36:02] Further information can be found at the LHC@home message board.
[2025-11-22 03:36:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 03:36:02] Checking for apptainer binary...
[2025-11-22 03:36:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 03:36:02] Running /usr/bin/apptainer --version
[2025-11-22 03:36:02] apptainer version 1.3.2-1.el7
[2025-11-22 03:36:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 03:36:04] c-205-15.aglt2.org
[2025-11-22 03:36:04] apptainer works
[2025-11-22 03:36:04] Set ATHENA_PROC_NUMBER=12
[2025-11-22 03:36:04] Set ATHENA_CORE_NUMBER=12
[2025-11-22 03:36:04] Starting ATLAS job with PandaID=6894290859
[2025-11-22 03:36:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 10:52:30]  *** The last 200 lines of the pilot log: ***
[2025-11-22 10:52:30] 2025-11-22 15:51:56,686 | INFO     | time since job start (26137s) is within the limit (172800.0s)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,666 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 10:52:30] 2025-11-22 15:51:57,670 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-22 10:52:30] 2025-11-22 15:51:57,673 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894290859/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,674 | INFO     | extracted standard info from prmon json
[2025-11-22 10:52:30] 2025-11-22 15:51:57,674 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 10:52:30] 2025-11-22 15:51:57,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 10:52:30] 2025-11-22 15:51:57,681 | INFO     | fitting pss+swap vs Time
[2025-11-22 10:52:30] 2025-11-22 15:51:57,683 | INFO     | sum of square deviations: 24311328296.418243
[2025-11-22 10:52:30] 2025-11-22 15:51:57,687 | INFO     | sum of deviations: 348526017910.29407
[2025-11-22 10:52:30] 2025-11-22 15:51:57,688 | INFO     | mean x: 1763813631.8154206
[2025-11-22 10:52:30] 2025-11-22 15:51:57,688 | INFO     | mean y: 3425530.8644859814
[2025-11-22 10:52:30] 2025-11-22 15:51:57,688 | INFO     | intersect: -25282520754.641033
[2025-11-22 10:52:30] 2025-11-22 15:51:57,688 | INFO     | chi2: 5.86671183276713
[2025-11-22 10:52:30] 2025-11-22 15:51:57,689 | INFO     | sum of square deviations: 23469251355.914948
[2025-11-22 10:52:30] 2025-11-22 15:51:57,693 | INFO     | sum of deviations: 499022454698.9149
[2025-11-22 10:52:30] 2025-11-22 15:51:57,693 | INFO     | mean x: 1763813479.319149
[2025-11-22 10:52:30] 2025-11-22 15:51:57,693 | INFO     | mean y: 3452756.5413711583
[2025-11-22 10:52:30] 2025-11-22 15:51:57,693 | INFO     | intersect: -37500194834.63087
[2025-11-22 10:52:30] 2025-11-22 15:51:57,694 | INFO     | chi2: 3.2635016635144294
[2025-11-22 10:52:30] 2025-11-22 15:51:57,694 | INFO     | current chi2=3.2635016635144294 (change=44.3725589982635 %)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,694 | INFO     | sum of square deviations: 22646849202.899715
[2025-11-22 10:52:30] 2025-11-22 15:51:57,698 | INFO     | sum of deviations: 563766828769.842
[2025-11-22 10:52:30] 2025-11-22 15:51:57,698 | INFO     | mean x: 1763813326.8229666
[2025-11-22 10:52:30] 2025-11-22 15:51:57,698 | INFO     | mean y: 3464714.5789473685
[2025-11-22 10:52:30] 2025-11-22 15:51:57,698 | INFO     | intersect: -43904605538.19811
[2025-11-22 10:52:30] 2025-11-22 15:51:57,699 | INFO     | chi2: 2.5463255312200794
[2025-11-22 10:52:30] 2025-11-22 15:51:57,699 | INFO     | current chi2=2.5463255312200794 (change=21.975663144661333 %)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,699 | INFO     | right removable region: 417
[2025-11-22 10:52:30] 2025-11-22 15:51:57,699 | INFO     | sum of square deviations: 23469169005.914948
[2025-11-22 10:52:30] 2025-11-22 15:51:57,703 | INFO     | sum of deviations: 204398188064.17072
[2025-11-22 10:52:30] 2025-11-22 15:51:57,703 | INFO     | mean x: 1763813784.319149
[2025-11-22 10:52:30] 2025-11-22 15:51:57,704 | INFO     | mean y: 3451555.2505910164
[2025-11-22 10:52:30] 2025-11-22 15:51:57,704 | INFO     | intersect: -15357993134.443361
[2025-11-22 10:52:30] 2025-11-22 15:51:57,704 | INFO     | chi2: 3.4705314488012355
[2025-11-22 10:52:30] 2025-11-22 15:51:57,704 | INFO     | current chi2=3.4705314488012355 (change=40.84366937170148 %)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,705 | INFO     | sum of square deviations: 22646684502.899715
[2025-11-22 10:52:30] 2025-11-22 15:51:57,709 | INFO     | sum of deviations: 171148330344.79413
[2025-11-22 10:52:30] 2025-11-22 15:51:57,709 | INFO     | mean x: 1763813936.8229666
[2025-11-22 10:52:30] 2025-11-22 15:51:57,709 | INFO     | mean y: 3457713.875598086
[2025-11-22 10:52:30] 2025-11-22 15:51:57,709 | INFO     | intersect: -13326255529.026537
[2025-11-22 10:52:30] 2025-11-22 15:51:57,710 | INFO     | chi2: 3.4092833235471494
[2025-11-22 10:52:30] 2025-11-22 15:51:57,710 | INFO     | current chi2=3.4092833235471494 (change=1.7648053664876613 %)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,710 | INFO     | left removable region: 20
[2025-11-22 10:52:30] 2025-11-22 15:51:57,710 | INFO     | sum of square deviations: 19402105022.11075
[2025-11-22 10:52:30] 2025-11-22 15:51:57,714 | INFO     | sum of deviations: 347677629831.25183
[2025-11-22 10:52:30] 2025-11-22 15:51:57,714 | INFO     | mean x: 1763813906.3324938
[2025-11-22 10:52:30] 2025-11-22 15:51:57,714 | INFO     | mean y: 3506260.7556675063
[2025-11-22 10:52:30] 2025-11-22 15:51:57,714 | INFO     | intersect: -31603303295.12669
[2025-11-22 10:52:30] 2025-11-22 15:51:57,715 | INFO     | chi2: 0.04045627055039269
[2025-11-22 10:52:30] 2025-11-22 15:51:57,715 | INFO     | current memory leak: 17.92 B/s (using 397 data points, chi2=0.04)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,715 | INFO     | could have reported an average CPU frequency of 2438 MHz (18 samples)
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | ..............................
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . Timing measurements:
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . get job = 0 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . initial setup = 2 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . payload setup = 7 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . stage-in = 0 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . payload execution = 26103 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . stage-out = 3 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | . log creation = 0 s
[2025-11-22 10:52:30] 2025-11-22 15:51:57,716 | INFO     | ..............................
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | 
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | job summary report
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | --------------------------------------------------
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | PanDA job id: 6894290859
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | task id: 47533967
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | errors: (none)
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 10:52:30] 2025-11-22 15:51:58,212 | INFO     | pilot state: finished 
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | transexitcode: 0
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | exeerrorcode: 0
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | exeerrordiag: 
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | exitcode: 0
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | exitmsg: OK
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | cpuconsumptiontime: 299370 s
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | nevents: 1000
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | neventsw: 0
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | pid: 22459
[2025-11-22 10:52:30] 2025-11-22 15:51:58,213 | INFO     | pgrp: 22459
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | corecount: 12
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | event service: False
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | sizes: {0: 2298585, 1: 2298784, 6: 2299046, 12: 2299074, 26111: 2336395, 26115: 2345389, 26118: 2345573, 26123: 2345819}
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | --------------------------------------------------
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | 
[2025-11-22 10:52:30] 2025-11-22 15:51:58,214 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 10:52:30] 2025-11-22 15:51:58,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 10:52:30] 2025-11-22 15:51:58,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,241 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 10:52:30] 2025-11-22 15:51:58,241 | INFO     | job 6894290859 has completed (purged errors)
[2025-11-22 10:52:30] 2025-11-22 15:51:58,241 | INFO     | overall cleanup function is called
[2025-11-22 10:52:30] 2025-11-22 15:51:59,256 | INFO     | --- collectZombieJob: --- 10, [22459]
[2025-11-22 10:52:30] 2025-11-22 15:51:59,256 | INFO     | zombie collector waiting for pid 22459
[2025-11-22 10:52:30] 2025-11-22 15:51:59,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 10:52:30] 2025-11-22 15:51:59,257 | INFO     | collected zombie processes
[2025-11-22 10:52:30] 2025-11-22 15:51:59,257 | INFO     | will attempt to kill all subprocesses of pid=22459
[2025-11-22 10:52:30] 2025-11-22 15:51:59,350 | INFO     | process IDs to be killed: [22459] (in reverse order)
[2025-11-22 10:52:30] 2025-11-22 15:51:59,401 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 10:52:30] 2025-11-22 15:51:59,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 10:52:30] 2025-11-22 15:51:59,405 | INFO     | did not find any defunct processes belonging to 22459
[2025-11-22 10:52:30] 2025-11-22 15:51:59,407 | INFO     | did not find any defunct processes belonging to 22459
[2025-11-22 10:52:30] 2025-11-22 15:51:59,409 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 10:52:30] 2025-11-22 15:51:59,409 | INFO     | ready for new job
[2025-11-22 10:52:30] 2025-11-22 15:51:59,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 10:52:30] 2025-11-22 15:51:59,411 | INFO     | ***************************************
[2025-11-22 10:52:30] 2025-11-22 15:51:59,411 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 10:52:30] 2025-11-22 15:51:59,411 | INFO     | ***************************************
[2025-11-22 10:52:30] 2025-11-22 15:51:59,412 | INFO     | 
[2025-11-22 10:52:30] 2025-11-22 15:51:59,412 | INFO     | architecture information:
[2025-11-22 10:52:30] 2025-11-22 15:51:59,413 | INFO     | executing command: cat /etc/os-release
[2025-11-22 10:52:30] 2025-11-22 15:51:59,429 | INFO     | cat /etc/os-release:
[2025-11-22 10:52:30] NAME="CentOS Linux"
[2025-11-22 10:52:30] VERSION="7 (Core)"
[2025-11-22 10:52:30] ID="centos"
[2025-11-22 10:52:30] ID_LIKE="rhel fedora"
[2025-11-22 10:52:30] VERSION_ID="7"
[2025-11-22 10:52:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 10:52:30] ANSI_COLOR="0;31"
[2025-11-22 10:52:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 10:52:30] HOME_URL="https://www.centos.org/"
[2025-11-22 10:52:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 10:52:30] 
[2025-11-22 10:52:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 10:52:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 10:52:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 10:52:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 10:52:30] 
[2025-11-22 10:52:30] 2025-11-22 15:51:59,429 | INFO     | ***************************************
[2025-11-22 10:52:30] 2025-11-22 15:51:59,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 10:52:30] 2025-11-22 15:51:59,949 | INFO     | sufficient remaining disk space (28233957376 B)
[2025-11-22 10:52:30] 2025-11-22 15:51:59,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 10:52:30] 2025-11-22 15:51:59,950 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 10:52:30] 2025-11-22 15:51:59,950 | INFO     | update_server=False
[2025-11-22 10:52:30] 2025-11-22 15:51:59,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 10:52:30] 2025-11-22 15:52:00,146 | INFO     | all payload control threads have been joined
[2025-11-22 10:52:30] 2025-11-22 15:52:00,228 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 10:52:30] 2025-11-22 15:52:00,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 10:52:30] 2025-11-22 15:52:00,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:52:30] 2025-11-22 15:52:00,229 | INFO     | will abort loop
[2025-11-22 10:52:30] 2025-11-22 15:52:00,501 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 10:52:30] 2025-11-22 15:52:00,800 | INFO     | all job control threads have been joined
[2025-11-22 10:52:30] 2025-11-22 15:52:00,875 | INFO     | all data control threads have been joined
[2025-11-22 10:52:30] 2025-11-22 15:52:00,956 | INFO     | [job] retrieve thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:00,970 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,151 | INFO     | [payload] control thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,234 | INFO     | [job] job monitor thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,511 | INFO     | [job] validate thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,532 | INFO     | [payload] validate_post thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,589 | INFO     | [payload] failed_post thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,658 | INFO     | [monitor] cgroup control has ended
[2025-11-22 10:52:30] 2025-11-22 15:52:01,803 | INFO     | [job] control thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:01,880 | INFO     | [data] control thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:02,055 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:02,224 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:02,361 | INFO     | [data] copytool_in thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:02,506 | INFO     | [data] copytool_out thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:02,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:52:30] 2025-11-22 15:52:03,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 10:52:30] 2025-11-22 15:52:03,814 | INFO     | [job] queue monitor thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:07,380 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:10,033 | INFO     | job.realtimelogging is not enabled
[2025-11-22 10:52:30] 2025-11-22 15:52:11,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 10:52:30] 2025-11-22 15:52:12,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116957857600)>', '<ExcThread(monitor, started 140115858945792)>']
[2025-11-22 10:52:30] 2025-11-22 15:52:17,430 | INFO     | all workflow threads have been joined
[2025-11-22 10:52:30] 2025-11-22 15:52:17,430 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 10:52:30] 2025-11-22 15:52:17,430 | INFO     | traces error code: 0
[2025-11-22 10:52:30] 2025-11-22 15:52:17,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 10:52:30] 2025-11-22 15:52:29,911 | INFO     | PID=16065 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 10:52:30] 2025-11-22 15:52:29,912 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 10:52:30] 2025-11-22 15:52:29,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 10:52:30] 2025-11-22 15:52:29,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 10:52:30] 2025-11-22 15:52:29,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 10:52:30] 2025-11-22 15:52:29,912 | INFO     | [monitor] control thread has ended
[2025-11-22 10:52:30] 2025-11-22 15:52:30,001 [wrapper] ==== pilot stdout END ====
[2025-11-22 10:52:30] 2025-11-22 15:52:30,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 10:52:30] 2025-11-22 15:52:30,009 [wrapper] pilotpid: 16065
[2025-11-22 10:52:30] 2025-11-22 15:52:30,013 [wrapper] Pilot exit status: 0
[2025-11-22 10:52:30] 2025-11-22 15:52:30,026 [wrapper] pandaids: 6894290859
[2025-11-22 10:52:30] 2025-11-22 15:52:30,069 [wrapper] cleanup supervisor_pilot 19536 16066
[2025-11-22 10:52:30] 2025-11-22 15:52:30,073 [wrapper] Test setup, not cleaning
[2025-11-22 10:52:30] 2025-11-22 15:52:30,077 [wrapper] apfmon messages muted
[2025-11-22 10:52:30] 2025-11-22 15:52:30,081 [wrapper] ==== wrapper stdout END ====
[2025-11-22 10:52:30] 2025-11-22 15:52:30,085 [wrapper] ==== wrapper stderr END ====
[2025-11-22 10:52:30]  *** Error codes and diagnostics ***
[2025-11-22 10:52:30]     "exeErrorCode": 0,
[2025-11-22 10:52:30]     "exeErrorDiag": "",
[2025-11-22 10:52:30]     "pilotErrorCode": 0,
[2025-11-22 10:52:30]     "pilotErrorDiag": "",
[2025-11-22 10:52:30]  *** Listing of results directory ***
[2025-11-22 10:52:30] total 1325296
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 07:04 queuedata.json
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 07:04 pilot3.tar.gz
[2025-11-22 10:52:30] -rwx------ 1 boincer umatlas     36292 Nov 21 07:04 runpilot2-wrapper.sh
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas       100 Nov 22 03:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 10:52:30] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 03:35 run_atlas
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas       105 Nov 22 03:35 job.xml
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas 412646201 Nov 22 03:36 EVNT.47493127._002435.pool.root.1
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 03:36 start_atlas.sh
[2025-11-22 10:52:30] drwxrwx--x 2 boincer umatlas      4096 Nov 22 03:36 shared
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas    590108 Nov 22 03:36 input.tar.gz
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas         0 Nov 22 03:36 boinc_lockfile
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 03:36 pandaJob.out
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas        57 Nov 22 03:36 setup.sh.local
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas    989760 Nov 22 03:36 agis_schedconf.cvmfs.json
[2025-11-22 10:52:30] drwx------ 5 boincer umatlas      4096 Nov 22 03:36 pilot3
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas       533 Nov 22 10:40 boinc_task_state.xml
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 10:48 init_data.xml
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas 928889749 Nov 22 10:51 HITS.47533967._004066.pool.root.1
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas        95 Nov 22 10:51 pilot_heartbeat.json
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas      1061 Nov 22 10:51 memory_monitor_summary.json
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas   1526164 Nov 22 10:51 agis_ddmendpoints.agis.ALL.json
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas   2174791 Nov 22 10:51 log.47533967._004066.job.log.tgz.1
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas      8666 Nov 22 10:51 heartbeat.json
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 10:52 boinc_mmap_file
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas        29 Nov 22 10:52 wrapper_checkpoint.txt
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas       745 Nov 22 10:52 pilotlog.txt
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas   3649165 Nov 22 10:52 log.47533967._004066.job.log.1
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas       353 Nov 22 10:52 output.list
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas       620 Nov 22 10:52 runtime_log
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas   5847040 Nov 22 10:52 result.tar.gz
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas       670 Nov 22 10:52 T3IKDma3eg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuOJKDms3zaYm.diag
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 10:52 runtime_log.err
[2025-11-22 10:52:30] -rw-r--r-- 1 boincer umatlas     21277 Nov 22 10:52 stderr.txt
[2025-11-22 10:52:30] HITS file was successfully produced:
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas 928889749 Nov 22 10:51 shared/HITS.pool.root.1
[2025-11-22 10:52:30]  *** Contents of shared directory: ***
[2025-11-22 10:52:30] total 1316408
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas 412646201 Nov 22 03:36 ATLAS.root_0
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 03:36 start_atlas.sh
[2025-11-22 10:52:30] -rw-r--r-- 2 boincer umatlas    590108 Nov 22 03:36 input.tar.gz
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas 928889749 Nov 22 10:51 HITS.pool.root.1
[2025-11-22 10:52:30] -rw------- 1 boincer umatlas   5847040 Nov 22 10:52 result.tar.gz
10:52:31 (12374): run_atlas exited; CPU time 293253.010218
10:52:31 (12374): called boinc_finish(0)

</stderr_txt>
]]>

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