Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:12:37 (5853): wrapper (7.7.26015): starting
02:12:37 (5853): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 02:12:37] Arguments: --nthreads 8
[2025-11-22 02:12:37] Threads: 8
[2025-11-22 02:12:37] Checking for CVMFS
[2025-11-22 02:12:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 02:12:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 02:12:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 02:12:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 02:12:37] 2.11.2.0 26213 59531 84024 153163 1 80 10457666 20275200 1 130560 0 14242204 99.825 3472857 29990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 02:12:37] CVMFS is ok
[2025-11-22 02:12:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 02:12:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 02:12:37] Further information can be found at the LHC@home message board.
[2025-11-22 02:12:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 02:12:37] Checking for apptainer binary...
[2025-11-22 02:12:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 02:12:37] Running /usr/bin/apptainer --version
[2025-11-22 02:12:37] apptainer version 1.3.2-1.el7
[2025-11-22 02:12:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 02:12:39] c-115-4.aglt2.org
[2025-11-22 02:12:39] apptainer works
[2025-11-22 02:12:39] Set ATHENA_PROC_NUMBER=8
[2025-11-22 02:12:39] Set ATHENA_CORE_NUMBER=8
[2025-11-22 02:12:39] Starting ATLAS job with PandaID=6893872262
[2025-11-22 02:12:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:14:09]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:14:09] 2025-11-22 18:13:53,321 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:14:09] 2025-11-22 18:13:53,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:14:09] 2025-11-22 18:13:53,332 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:14:09] 2025-11-22 18:13:53,333 | INFO     | sum of square deviations: 85156052937.29845
[2025-11-22 13:14:09] 2025-11-22 18:13:53,341 | INFO     | sum of deviations: 483683258204.4975
[2025-11-22 13:14:09] 2025-11-22 18:13:53,341 | INFO     | mean x: 1763815403.1784616
[2025-11-22 13:14:09] 2025-11-22 18:13:53,341 | INFO     | mean y: 3130269.4784615384
[2025-11-22 13:14:09] 2025-11-22 18:13:53,341 | INFO     | intersect: -10015276545.464067
[2025-11-22 13:14:09] 2025-11-22 18:13:53,342 | INFO     | chi2: 6.302895946904847
[2025-11-22 13:14:09] 2025-11-22 18:13:53,343 | INFO     | sum of square deviations: 83206113667.47913
[2025-11-22 13:14:09] 2025-11-22 18:13:53,350 | INFO     | sum of deviations: 705821734189.4884
[2025-11-22 13:14:09] 2025-11-22 18:13:53,350 | INFO     | mean x: 1763815250.6837208
[2025-11-22 13:14:09] 2025-11-22 18:13:53,351 | INFO     | mean y: 3147627.379844961
[2025-11-22 13:14:09] 2025-11-22 18:13:53,351 | INFO     | intersect: -14958963738.651087
[2025-11-22 13:14:09] 2025-11-22 18:13:53,351 | INFO     | chi2: 3.462426544061686
[2025-11-22 13:14:09] 2025-11-22 18:13:53,351 | INFO     | current chi2=3.462426544061686 (change=45.06610019856072 %)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,352 | INFO     | sum of square deviations: 81286174960.12341
[2025-11-22 13:14:09] 2025-11-22 18:13:53,360 | INFO     | sum of deviations: 826439319996.3203
[2025-11-22 13:14:09] 2025-11-22 18:13:53,360 | INFO     | mean x: 1763815098.1890626
[2025-11-22 13:14:09] 2025-11-22 18:13:53,360 | INFO     | mean y: 3157202.6171875
[2025-11-22 13:14:09] 2025-11-22 18:13:53,360 | INFO     | intersect: -17929611205.56181
[2025-11-22 13:14:09] 2025-11-22 18:13:53,360 | INFO     | time since job start (39656s) is within the limit (172800.0s)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,361 | INFO     | chi2: 2.559846628049018
[2025-11-22 13:14:09] 2025-11-22 18:13:53,362 | INFO     | current chi2=2.559846628049018 (change=26.06784301491272 %)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,362 | INFO     | sum of square deviations: 79395926539.50188
[2025-11-22 13:14:09] 2025-11-22 18:13:53,370 | INFO     | sum of deviations: 845896778617.9109
[2025-11-22 13:14:09] 2025-11-22 18:13:53,370 | INFO     | mean x: 1763814945.6913385
[2025-11-22 13:14:09] 2025-11-22 18:13:53,370 | INFO     | mean y: 3158759.7291338583
[2025-11-22 13:14:09] 2025-11-22 18:13:53,370 | INFO     | intersect: -18788805081.087193
[2025-11-22 13:14:09] 2025-11-22 18:13:53,371 | INFO     | chi2: 2.4239587702387837
[2025-11-22 13:14:09] 2025-11-22 18:13:53,371 | INFO     | current chi2=2.4239587702387837 (change=5.308437479076663 %)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,371 | INFO     | right removable region: 634
[2025-11-22 13:14:09] 2025-11-22 18:13:53,372 | INFO     | sum of square deviations: 83205844657.47908
[2025-11-22 13:14:09] 2025-11-22 18:13:53,379 | INFO     | sum of deviations: 287764817804.27814
[2025-11-22 13:14:09] 2025-11-22 18:13:53,380 | INFO     | mean x: 1763815555.6837208
[2025-11-22 13:14:09] 2025-11-22 18:13:53,380 | INFO     | mean y: 3145562.2170542637
[2025-11-22 13:14:09] 2025-11-22 18:13:53,380 | INFO     | intersect: -6096955507.738905
[2025-11-22 13:14:09] 2025-11-22 18:13:53,380 | INFO     | chi2: 4.003319392396714
[2025-11-22 13:14:09] 2025-11-22 18:13:53,381 | INFO     | current chi2=4.003319392396714 (change=36.484444196439306 %)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,381 | INFO     | sum of square deviations: 81285715386.87369
[2025-11-22 13:14:09] 2025-11-22 18:13:53,389 | INFO     | sum of deviations: 249863799196.36438
[2025-11-22 13:14:09] 2025-11-22 18:13:53,389 | INFO     | mean x: 1763815708.1859374
[2025-11-22 13:14:09] 2025-11-22 18:13:53,389 | INFO     | mean y: 3148570.5515625
[2025-11-22 13:14:09] 2025-11-22 18:13:53,389 | INFO     | intersect: -5418636694.325768
[2025-11-22 13:14:09] 2025-11-22 18:13:53,390 | INFO     | chi2: 3.95876138727078
[2025-11-22 13:14:09] 2025-11-22 18:13:53,390 | INFO     | current chi2=3.95876138727078 (change=1.1130264852352367 %)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,390 | INFO     | left removable region: 20
[2025-11-22 13:14:09] 2025-11-22 18:13:53,391 | INFO     | sum of square deviations: 71776147003.55208
[2025-11-22 13:14:09] 2025-11-22 18:13:53,398 | INFO     | sum of deviations: 563814698210.1025
[2025-11-22 13:14:09] 2025-11-22 18:13:53,398 | INFO     | mean x: 1763815525.203583
[2025-11-22 13:14:09] 2025-11-22 18:13:53,398 | INFO     | mean y: 3181680.135179153
[2025-11-22 13:14:09] 2025-11-22 18:13:53,398 | INFO     | intersect: -13851910290.624094
[2025-11-22 13:14:09] 2025-11-22 18:13:53,399 | INFO     | chi2: 0.040789610279765375
[2025-11-22 13:14:09] 2025-11-22 18:13:53,399 | INFO     | current memory leak: 7.86 B/s (using 614 data points, chi2=0.04)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | could have reported an average CPU frequency of 2404 MHz (25 samples)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | ..............................
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . Timing measurements:
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . get job = 0 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . initial setup = 2 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . payload setup = 8 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . stage-in = 0 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . payload execution = 39613 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,400 | INFO     | . stage-out = 3 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,401 | INFO     | . log creation = 0 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,401 | INFO     | ..............................
[2025-11-22 13:14:09] 2025-11-22 18:13:53,481 | INFO     | 
[2025-11-22 13:14:09] 2025-11-22 18:13:53,482 | INFO     | job summary report
[2025-11-22 13:14:09] 2025-11-22 18:13:53,482 | INFO     | --------------------------------------------------
[2025-11-22 13:14:09] 2025-11-22 18:13:53,482 | INFO     | PanDA job id: 6893872262
[2025-11-22 13:14:09] 2025-11-22 18:13:53,482 | INFO     | task id: 47523449
[2025-11-22 13:14:09] 2025-11-22 18:13:53,482 | INFO     | errors: (none)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | pilot state: finished 
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | transexitcode: 0
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | exeerrorcode: 0
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | exeerrordiag: 
[2025-11-22 13:14:09] 2025-11-22 18:13:53,483 | INFO     | exitcode: 0
[2025-11-22 13:14:09] 2025-11-22 18:13:53,484 | INFO     | exitmsg: OK
[2025-11-22 13:14:09] 2025-11-22 18:13:53,484 | INFO     | cpuconsumptiontime: 307515 s
[2025-11-22 13:14:09] 2025-11-22 18:13:53,484 | INFO     | nevents: 1000
[2025-11-22 13:14:09] 2025-11-22 18:13:53,484 | INFO     | neventsw: 0
[2025-11-22 13:14:09] 2025-11-22 18:13:53,484 | INFO     | pid: 15992
[2025-11-22 13:14:09] 2025-11-22 18:13:53,485 | INFO     | pgrp: 15992
[2025-11-22 13:14:09] 2025-11-22 18:13:53,485 | INFO     | corecount: 8
[2025-11-22 13:14:09] 2025-11-22 18:13:53,485 | INFO     | event service: False
[2025-11-22 13:14:09] 2025-11-22 18:13:53,485 | INFO     | sizes: {0: 2298635, 1: 2298834, 7: 2299096, 12: 2299124, 39627: 2342489, 39631: 2351483, 39634: 2351667, 39640: 2351977}
[2025-11-22 13:14:09] 2025-11-22 18:13:53,485 | INFO     | --------------------------------------------------
[2025-11-22 13:14:09] 2025-11-22 18:13:53,486 | INFO     | 
[2025-11-22 13:14:09] 2025-11-22 18:13:53,486 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 13:14:09] 2025-11-22 18:13:53,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:14:09] 2025-11-22 18:13:53,518 | INFO     | job 6893872262 has completed (purged errors)
[2025-11-22 13:14:09] 2025-11-22 18:13:53,518 | INFO     | overall cleanup function is called
[2025-11-22 13:14:09] 2025-11-22 18:13:54,530 | INFO     | --- collectZombieJob: --- 10, [15992]
[2025-11-22 13:14:09] 2025-11-22 18:13:54,530 | INFO     | zombie collector waiting for pid 15992
[2025-11-22 13:14:09] 2025-11-22 18:13:54,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:14:09] 2025-11-22 18:13:54,531 | INFO     | collected zombie processes
[2025-11-22 13:14:09] 2025-11-22 18:13:54,531 | INFO     | will attempt to kill all subprocesses of pid=15992
[2025-11-22 13:14:09] 2025-11-22 18:13:54,619 | INFO     | process IDs to be killed: [15992] (in reverse order)
[2025-11-22 13:14:09] 2025-11-22 18:13:54,675 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:14:09] 2025-11-22 18:13:54,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:14:09] 2025-11-22 18:13:54,680 | INFO     | did not find any defunct processes belonging to 15992
[2025-11-22 13:14:09] 2025-11-22 18:13:54,683 | INFO     | did not find any defunct processes belonging to 15992
[2025-11-22 13:14:09] 2025-11-22 18:13:54,686 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:14:09] 2025-11-22 18:13:54,686 | INFO     | ready for new job
[2025-11-22 13:14:09] 2025-11-22 18:13:54,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:14:09] 2025-11-22 18:13:54,689 | INFO     | ***************************************
[2025-11-22 13:14:09] 2025-11-22 18:13:54,689 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:14:09] 2025-11-22 18:13:54,690 | INFO     | ***************************************
[2025-11-22 13:14:09] 2025-11-22 18:13:54,690 | INFO     | 
[2025-11-22 13:14:09] 2025-11-22 18:13:54,690 | INFO     | architecture information:
[2025-11-22 13:14:09] 2025-11-22 18:13:54,691 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:14:09] 2025-11-22 18:13:54,709 | INFO     | cat /etc/os-release:
[2025-11-22 13:14:09] NAME="CentOS Linux"
[2025-11-22 13:14:09] VERSION="7 (Core)"
[2025-11-22 13:14:09] ID="centos"
[2025-11-22 13:14:09] ID_LIKE="rhel fedora"
[2025-11-22 13:14:09] VERSION_ID="7"
[2025-11-22 13:14:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:14:09] ANSI_COLOR="0;31"
[2025-11-22 13:14:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:14:09] HOME_URL="https://www.centos.org/"
[2025-11-22 13:14:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:14:09] 
[2025-11-22 13:14:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:14:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:14:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:14:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:14:09] 
[2025-11-22 13:14:09] 2025-11-22 18:13:54,710 | INFO     | ***************************************
[2025-11-22 13:14:09] 2025-11-22 18:13:55,213 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 13:14:09] 2025-11-22 18:13:55,235 | INFO     | sufficient remaining disk space (17476616192 B)
[2025-11-22 13:14:09] 2025-11-22 18:13:55,235 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:14:09] 2025-11-22 18:13:55,235 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:14:09] 2025-11-22 18:13:55,236 | INFO     | update_server=False
[2025-11-22 13:14:09] 2025-11-22 18:13:55,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:14:09] 2025-11-22 18:13:55,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:14:09] 2025-11-22 18:13:55,236 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-22 13:14:09] 2025-11-22 18:13:55,237 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:14:09] 2025-11-22 18:13:55,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:14:09] 2025-11-22 18:13:55,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:14:09] 2025-11-22 18:13:55,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:14:09] 2025-11-22 18:13:55,759 | INFO     | all job control threads have been joined
[2025-11-22 13:14:09] 2025-11-22 18:13:55,843 | INFO     | all data control threads have been joined
[2025-11-22 13:14:09] 2025-11-22 18:13:56,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:14:09] 2025-11-22 18:13:56,052 | INFO     | aborting loop
[2025-11-22 13:14:09] 2025-11-22 18:13:56,075 | INFO     | all payload control threads have been joined
[2025-11-22 13:14:09] 2025-11-22 18:13:56,239 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,242 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,406 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,507 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,605 | INFO     | [job] validate thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,765 | INFO     | [job] control thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:56,849 | INFO     | [data] control thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,057 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,080 | INFO     | [payload] control thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,141 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,448 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,600 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,635 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:57,817 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:13:58,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:14:09] 2025-11-22 18:14:02,023 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:14:09] 2025-11-22 18:14:02,561 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:14:09] 2025-11-22 18:14:04,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906331658048)>', '<ExcThread(monitor, started 139905531373312)>']
[2025-11-22 13:14:09] 2025-11-22 18:14:04,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:14:09] 2025-11-22 18:14:04,265 | INFO     | [monitor] control thread has ended
[2025-11-22 13:14:09] 2025-11-22 18:14:09,102 | INFO     | all workflow threads have been joined
[2025-11-22 13:14:09] 2025-11-22 18:14:09,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:14:09] 2025-11-22 18:14:09,109 | INFO     | traces error code: 0
[2025-11-22 13:14:09] 2025-11-22 18:14:09,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:14:09] 2025-11-22 18:14:09,208 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:14:09] 2025-11-22 18:14:09,213 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:14:09] 2025-11-22 18:14:09,218 [wrapper] pilotpid: 9532
[2025-11-22 13:14:09] 2025-11-22 18:14:09,223 [wrapper] Pilot exit status: 0
[2025-11-22 13:14:09] 2025-11-22 18:14:09,241 [wrapper] pandaids: 6893872262
[2025-11-22 13:14:09] 2025-11-22 18:14:09,287 [wrapper] cleanup supervisor_pilot  4833 9533
[2025-11-22 13:14:09] 2025-11-22 18:14:09,293 [wrapper] Test setup, not cleaning
[2025-11-22 13:14:09] 2025-11-22 18:14:09,298 [wrapper] apfmon messages muted
[2025-11-22 13:14:09] 2025-11-22 18:14:09,302 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:14:09] 2025-11-22 18:14:09,307 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:14:09]  *** Error codes and diagnostics ***
[2025-11-22 13:14:09]     "exeErrorCode": 0,
[2025-11-22 13:14:09]     "exeErrorDiag": "",
[2025-11-22 13:14:09]     "pilotErrorCode": 0,
[2025-11-22 13:14:09]     "pilotErrorDiag": "",
[2025-11-22 13:14:09]  *** Listing of results directory ***
[2025-11-22 13:14:09] total 1315944
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 10:07 pilot3.tar.gz
[2025-11-22 13:14:09] -rwx------ 1 boincer umatlas     36292 Nov 20 10:12 runpilot2-wrapper.sh
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 10:12 queuedata.json
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas       100 Nov 22 02:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:14:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 02:12 run_atlas
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas       105 Nov 22 02:12 job.xml
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas 410438274 Nov 22 02:12 EVNT.47493127._000675.pool.root.1
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 02:12 start_atlas.sh
[2025-11-22 13:14:09] drwxrwx--x 2 boincer umatlas      4096 Nov 22 02:12 shared
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas    590096 Nov 22 02:12 input.tar.gz
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas         0 Nov 22 02:12 boinc_lockfile
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 02:12 pandaJob.out
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas        57 Nov 22 02:12 setup.sh.local
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas    989752 Nov 22 02:12 agis_schedconf.cvmfs.json
[2025-11-22 13:14:09] drwx------ 5 boincer umatlas      4096 Nov 22 02:12 pilot3
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas       533 Nov 22 13:00 boinc_task_state.xml
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas      5911 Nov 22 13:12 init_data.xml
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas 918458615 Nov 22 13:13 HITS.47523449._006750.pool.root.1
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas        95 Nov 22 13:13 pilot_heartbeat.json
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas      1064 Nov 22 13:13 memory_monitor_summary.json
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas   1526164 Nov 22 13:13 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas   1906490 Nov 22 13:13 log.47523449._006750.job.log.tgz.1
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas      8657 Nov 22 13:13 heartbeat.json
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 13:14 boinc_mmap_file
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas        29 Nov 22 13:14 wrapper_checkpoint.txt
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas      4552 Nov 22 13:14 pilotlog.txt
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas   5446799 Nov 22 13:14 log.47523449._006750.job.log.1
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas       353 Nov 22 13:14 output.list
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas       620 Nov 22 13:14 runtime_log
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas   7372800 Nov 22 13:14 result.tar.gz
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas      9338 Nov 22 13:14 runtime_log.err
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas       666 Nov 22 13:14 6iiNDm7VLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2qGKDmOjaS8n.diag
[2025-11-22 13:14:09] -rw-r--r-- 1 boincer umatlas     21026 Nov 22 13:14 stderr.txt
[2025-11-22 13:14:09] HITS file was successfully produced:
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas 918458615 Nov 22 13:13 shared/HITS.pool.root.1
[2025-11-22 13:14:09]  *** Contents of shared directory: ***
[2025-11-22 13:14:09] total 1305556
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas 410438274 Nov 22 02:12 ATLAS.root_0
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 02:12 start_atlas.sh
[2025-11-22 13:14:09] -rw-r--r-- 2 boincer umatlas    590096 Nov 22 02:12 input.tar.gz
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas 918458615 Nov 22 13:13 HITS.pool.root.1
[2025-11-22 13:14:09] -rw------- 1 boincer umatlas   7372800 Nov 22 13:14 result.tar.gz
13:14:11 (5853): run_atlas exited; CPU time 305874.468675
13:14:11 (5853): called boinc_finish(0)

</stderr_txt>
]]>

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