Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:44:02 (216074): wrapper (7.7.26015): starting
22:44:02 (216074): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 22:44:02] Arguments: --nthreads 12
[2025-11-21 22:44:02] Threads: 12
[2025-11-21 22:44:02] Checking for CVMFS
[2025-11-21 22:44:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:44:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:44:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:44:02] 2.11.5.0 2885516 22233 251812 153162 0 130 45295230 45568000 12091 130560 0 201054665 99.752 144906608 10368 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 22:44:02] CVMFS is ok
[2025-11-21 22:44:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 22:44:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 22:44:03] Further information can be found at the LHC@home message board.
[2025-11-21 22:44:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:44:03] Checking for apptainer binary...
[2025-11-21 22:44:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:44:03] Running /usr/bin/apptainer --version
[2025-11-21 22:44:03] apptainer version 1.4.1-1.el9
[2025-11-21 22:44:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:44:03] wns0089.triumf.lcg
[2025-11-21 22:44:03] apptainer works
[2025-11-21 22:44:03] Set ATHENA_PROC_NUMBER=12
[2025-11-21 22:44:03] Set ATHENA_CORE_NUMBER=12
[2025-11-21 22:44:03] Starting ATLAS job with PandaID=6895330392
[2025-11-21 22:44:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:50:42]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | wrong length of table data, x=[1763793959.0, 1763794020.0], y=[1386.0, 373848.0] (must be same and length>=4)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | could have reported an average CPU frequency of 2422 MHz (4 samples)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . Timing measurements:
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . get job = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . initial setup = 3 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload setup = 27 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . stage-in = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload execution = 101 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . stage-out = 1 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . log creation = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895330392/pilotlog.txt
[2025-11-21 22:50:42] 2025-11-22 06:49:37,496 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 22:50:42] - Log from pilotlog.txt -
[2025-11-21 22:50:42] 2025-11-22 06:49:37,478 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895330392/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | INFO     | extracted standard info from prmon json
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | wrong length of table data, x=[1763793959.0, 1763794020.0], y=[1386.0, 373848.0] (must be same and length>=4)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | could have reported an average CPU frequency of 2422 MHz (4 samples)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . Timing measurements:
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . get job = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . initial setup = 3 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload setup = 27 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . stage-in = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload execution = 101 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . stage-out = 1 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . log creation = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895330392/pilotlog.txt
[2025-11-21 22:50:42] 2025-11-22 06:49:37,496 | WARNING  | 
[2025-11-21 22:50:42] [begin log extracts]
[2025-11-21 22:50:42] - Log from pilotlog.txt -
[2025-11-21 22:50:42] 2025-11-22 06:49:37,478 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895330392/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | INFO     | extracted standard info from prmon json
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:50:42] 2025-11-22 06:49:37,479 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:50:42] 2025-11-22 06:49:37,480 | WARNING  | wrong length of table data, x=[1763793959.0, 1763794020.0], y=[1386.0, 373848.0] (must be same and length>=4)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | could have reported an average CPU frequency of 2422 MHz (4 samples)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . Timing measurements:
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . get job = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . initial setup = 3 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload setup = 27 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . stage-in = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,481 | INFO     | . payload execution = 101 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . stage-out = 1 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | . log creation = 0 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | ..............................
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:50:42] 2025-11-22 06:49:37,482 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895330392/pilotlog.txt
[2025-11-21 22:50:42] [end log extracts]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,496 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,497 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | 
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | job summary report
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | --------------------------------------------------
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | PanDA job id: 6895330392
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | task id: 47556137
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 22:47:14,683 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | pilot state: failed 
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | transexitcode: 65
[2025-11-21 22:50:42] 2025-11-22 06:49:37,558 | INFO     | exeerrorcode: 65
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | exitcode: 65
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | cpuconsumptiontime: 45 s
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | nevents: 0
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | neventsw: 0
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | pid: 226391
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | pgrp: 226391
[2025-11-21 22:50:42] 2025-11-22 06:49:37,559 | INFO     | corecount: 12
[2025-11-21 22:50:42] 2025-11-22 06:49:37,563 | INFO     | event service: False
[2025-11-21 22:50:42] 2025-11-22 06:49:37,563 | INFO     | sizes: {0: 2297928, 1: 2298610, 2: 2298809, 13: 2298809, 15: 2299127, 23: 2299155, 130: 2324679, 132: 2328969, 133: 2329053, 267: 2329219}
[2025-11-21 22:50:42] 2025-11-22 06:49:37,563 | INFO     | --------------------------------------------------
[2025-11-21 22:50:42] 2025-11-22 06:49:37,563 | INFO     | 
[2025-11-21 22:50:42] 2025-11-22 06:49:37,563 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | job 6895330392 has completed (purged errors)
[2025-11-21 22:50:42] 2025-11-22 06:49:37,755 | INFO     | overall cleanup function is called
[2025-11-21 22:50:42] 2025-11-22 06:49:38,768 | INFO     | --- collectZombieJob: --- 10, [226391]
[2025-11-21 22:50:42] 2025-11-22 06:49:38,768 | INFO     | zombie collector waiting for pid 226391
[2025-11-21 22:50:42] 2025-11-22 06:49:38,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:50:42] 2025-11-22 06:49:38,768 | INFO     | collected zombie processes
[2025-11-21 22:50:42] 2025-11-22 06:49:38,769 | INFO     | will attempt to kill all subprocesses of pid=226391
[2025-11-21 22:50:42] 2025-11-22 06:49:38,940 | INFO     | process IDs to be killed: [226391] (in reverse order)
[2025-11-21 22:50:42] 2025-11-22 06:49:39,028 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:50:42] 2025-11-22 06:49:39,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:50:42] 2025-11-22 06:49:39,035 | INFO     | did not find any defunct processes belonging to 226391
[2025-11-21 22:50:42] 2025-11-22 06:49:39,042 | INFO     | did not find any defunct processes belonging to 226391
[2025-11-21 22:50:42] 2025-11-22 06:49:39,043 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:50:42] 2025-11-22 06:49:39,043 | INFO     | ready for new job
[2025-11-21 22:50:42] 2025-11-22 06:49:39,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:50:42] 2025-11-22 06:49:39,045 | INFO     | ***************************************
[2025-11-21 22:50:42] 2025-11-22 06:49:39,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:50:42] 2025-11-22 06:49:39,045 | INFO     | ***************************************
[2025-11-21 22:50:42] 2025-11-22 06:49:39,045 | INFO     | 
[2025-11-21 22:50:42] 2025-11-22 06:49:39,047 | INFO     | architecture information:
[2025-11-21 22:50:42] 2025-11-22 06:49:39,047 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:50:42] 2025-11-22 06:49:39,140 | INFO     | cat /etc/os-release:
[2025-11-21 22:50:42] NAME="CentOS Linux"
[2025-11-21 22:50:42] VERSION="7 (Core)"
[2025-11-21 22:50:42] ID="centos"
[2025-11-21 22:50:42] ID_LIKE="rhel fedora"
[2025-11-21 22:50:42] VERSION_ID="7"
[2025-11-21 22:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:50:42] ANSI_COLOR="0;31"
[2025-11-21 22:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:50:42] HOME_URL="https://www.centos.org/"
[2025-11-21 22:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:50:42] 
[2025-11-21 22:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:50:42] 
[2025-11-21 22:50:42] 2025-11-22 06:49:39,141 | INFO     | ***************************************
[2025-11-21 22:50:42] 2025-11-22 06:49:39,644 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 22:50:42] 2025-11-22 06:49:39,782 | INFO     | sufficient remaining disk space (1897985474560 B)
[2025-11-21 22:50:42] 2025-11-22 06:49:39,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:50:42] 2025-11-22 06:49:39,783 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:50:42] 2025-11-22 06:49:39,783 | INFO     | update_server=False
[2025-11-21 22:50:42] 2025-11-22 06:49:39,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:50:42] 2025-11-22 06:49:39,785 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:50:42] 2025-11-22 06:49:39,785 | INFO     | aborting loop
[2025-11-21 22:50:42] 2025-11-22 06:49:39,833 | INFO     | all data control threads have been joined
[2025-11-21 22:50:42] 2025-11-22 06:49:39,834 | INFO     | all job control threads have been joined
[2025-11-21 22:50:42] 2025-11-22 06:49:40,055 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:50:42] 2025-11-22 06:49:40,175 | INFO     | all payload control threads have been joined
[2025-11-21 22:50:42] 2025-11-22 06:49:40,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:50:42] 2025-11-22 06:49:40,789 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:40,791 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:40,832 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:40,839 | INFO     | [data] control thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:40,840 | INFO     | [job] control thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:40,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,002 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,181 | INFO     | [payload] control thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,561 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,715 | INFO     | [job] validate thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,876 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,926 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:41,937 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:42,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:50:42] 2025-11-22 06:49:42,621 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:43,586 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:49:44,064 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:50:42] 2025-11-22 06:50:10,375 | INFO     | PID=219768 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 22:50:42] 2025-11-22 06:50:10,375 | INFO     | .. there are 14 such processes running
[2025-11-21 22:50:42] 2025-11-22 06:50:10,376 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:50:42] 2025-11-22 06:50:10,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:50:42] 2025-11-22 06:50:10,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:50:42] 2025-11-22 06:50:34,152 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:50:42] 2025-11-22 06:50:36,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605953050432)>', '<ExcThread(monitor, started 140605267105536)>']
[2025-11-21 22:50:42] 2025-11-22 06:50:36,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:50:42] 2025-11-22 06:50:36,529 | INFO     | [monitor] control thread has ended
[2025-11-21 22:50:42] 2025-11-22 06:50:41,165 | INFO     | all workflow threads have been joined
[2025-11-21 22:50:42] 2025-11-22 06:50:41,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:50:42] 2025-11-22 06:50:41,166 | INFO     | traces error code: 0
[2025-11-21 22:50:42] 2025-11-22 06:50:41,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:50:42] 2025-11-22 06:50:41,400 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:50:42] 2025-11-22 06:50:41,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:50:42] 2025-11-22 06:50:41,514 [wrapper] pilotpid: 219768
[2025-11-21 22:50:42] 2025-11-22 06:50:41,550 [wrapper] Pilot exit status: 0
[2025-11-21 22:50:42] 2025-11-22 06:50:41,649 [wrapper] pandaids: 6895330392
[2025-11-21 22:50:42] 2025-11-22 06:50:41,897 [wrapper] cleanup supervisor_pilot  219774 219769
[2025-11-21 22:50:42] 2025-11-22 06:50:41,900 [wrapper] Test setup, not cleaning
[2025-11-21 22:50:42] 2025-11-22 06:50:41,902 [wrapper] apfmon messages muted
[2025-11-21 22:50:42] 2025-11-22 06:50:41,904 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:50:42] 2025-11-22 06:50:41,906 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:50:42]  *** Error codes and diagnostics ***
[2025-11-21 22:50:42]     "exeErrorCode": 65,
[2025-11-21 22:50:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 22:50:42]     "pilotErrorCode": 1305,
[2025-11-21 22:50:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 22:50:42]  *** Listing of results directory ***
[2025-11-21 22:50:42] total 404444
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:30 pilot3.tar.gz
[2025-11-21 22:50:42] -rwx------. 1 boinc boinc     36292 Nov 21 12:36 runpilot2-wrapper.sh
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:37 queuedata.json
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc       100 Nov 21 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:50:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 22:44 run_atlas
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc       105 Nov 21 22:44 job.xml
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc      6595 Nov 21 22:44 init_data.xml
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc 409923037 Nov 21 22:44 EVNT.47483658._000135.pool.root.1
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc     15847 Nov 21 22:44 start_atlas.sh
[2025-11-21 22:50:42] drwxrwx--x. 2 boinc boinc      4096 Nov 21 22:44 shared
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc    590098 Nov 21 22:44 input.tar.gz
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc         0 Nov 21 22:44 boinc_lockfile
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc      2785 Nov 21 22:44 pandaJob.out
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc    989752 Nov 21 22:44 agis_schedconf.cvmfs.json
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc   1526164 Nov 21 22:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:50:42] drwx------. 5 boinc boinc      4096 Nov 21 22:44 pilot3
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc       524 Nov 21 22:46 boinc_task_state.xml
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc       985 Nov 21 22:47 memory_monitor_summary.json
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc     49551 Nov 21 22:47 log.47556137._001343.job.log.tgz.1
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc        95 Nov 21 22:49 pilot_heartbeat.json
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc     10336 Nov 21 22:49 heartbeat.json
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc        23 Nov 21 22:50 wrapper_checkpoint.txt
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc      8192 Nov 21 22:50 boinc_mmap_file
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc      4822 Nov 21 22:50 pilotlog.txt
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc    104393 Nov 21 22:50 log.47556137._001343.job.log.1
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc       186 Nov 21 22:50 output.list
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc       620 Nov 21 22:50 runtime_log
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc    174080 Nov 21 22:50 result.tar.gz
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc      8636 Nov 21 22:50 runtime_log.err
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc       645 Nov 21 22:50 eKFODmS3mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxhJKDmO75YAo.diag
[2025-11-21 22:50:42] -rw-r--r--. 1 boinc boinc     22442 Nov 21 22:50 stderr.txt
[2025-11-21 22:50:42] No HITS result produced
[2025-11-21 22:50:42]  *** Contents of shared directory: ***
[2025-11-21 22:50:42] total 401088
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc 409923037 Nov 21 22:44 ATLAS.root_0
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc     15847 Nov 21 22:44 start_atlas.sh
[2025-11-21 22:50:42] -rw-r--r--. 2 boinc boinc    590098 Nov 21 22:44 input.tar.gz
[2025-11-21 22:50:42] -rw-------. 1 boinc boinc    174080 Nov 21 22:50 result.tar.gz
22:50:44 (216074): run_atlas exited; CPU time 47.882856
22:50:44 (216074): called boinc_finish(0)

</stderr_txt>
]]>

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