Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:52:27 (31471): wrapper (7.7.26015): starting
03:52:27 (31471): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 03:52:27] Arguments: --nthreads 8
[2025-11-25 03:52:27] Threads: 8
[2025-11-25 03:52:27] Checking for CVMFS
[2025-11-25 03:52:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:52:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:52:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:52:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:52:30] 2.11.2.0 32577 283373 145712 153266 0 118 19512510 25165825 4467 130560 11 124409337 99.848 84187733 3037 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 03:52:30] CVMFS is ok
[2025-11-25 03:52:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:52:30] Checking for apptainer binary...
[2025-11-25 03:52:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 03:52:30] Running /usr/bin/apptainer --version
[2025-11-25 03:52:30] apptainer version 1.3.2-1.el7
[2025-11-25 03:52:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:52:47] cg-vwn389.simple-grid.lan
[2025-11-25 03:52:47] apptainer works
[2025-11-25 03:52:47] Set ATHENA_PROC_NUMBER=8
[2025-11-25 03:52:47] Set ATHENA_CORE_NUMBER=8
[2025-11-25 03:52:47] Starting ATLAS job with PandaID=6894290843
[2025-11-25 03:52:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:23:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:23:53] 2025-11-26 04:22:34,726 | INFO     | monitor loop #6114: job 0:6894290843 is in state 'finished'
[2025-11-26 05:23:53] 2025-11-26 04:22:34,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:23:53] 2025-11-26 04:22:35,274 | INFO     | time since job start (91713s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:37,241 | INFO     | monitor loop #6115: job 0:6894290843 is in state 'finished'
[2025-11-26 05:23:53] 2025-11-26 04:22:37,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:23:53] 2025-11-26 04:22:37,281 | INFO     | time since job start (91715s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:39,294 | INFO     | time since job start (91717s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:39,746 | INFO     | monitor loop #6116: job 0:6894290843 is in state 'finished'
[2025-11-26 05:23:53] 2025-11-26 04:22:39,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:23:53] 2025-11-26 04:22:41,307 | INFO     | time since job start (91719s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:42,251 | INFO     | monitor loop #6117: job 0:6894290843 is in state 'finished'
[2025-11-26 05:23:53] 2025-11-26 04:22:42,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:23:53] 2025-11-26 04:22:43,319 | INFO     | time since job start (91721s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:44,638 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 05:23:53] 2025-11-26 04:22:44,639 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 05:23:53] 2025-11-26 04:22:44,640 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6894290843/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:23:53] 2025-11-26 04:22:44,641 | INFO     | extracted standard info from prmon json
[2025-11-26 05:23:53] 2025-11-26 04:22:44,641 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:23:53] 2025-11-26 04:22:44,642 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:23:53] 2025-11-26 04:22:44,684 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:23:53] 2025-11-26 04:22:44,686 | INFO     | sum of square deviations: 1048623848189.7864
[2025-11-26 05:23:53] 2025-11-26 04:22:44,766 | INFO     | monitor loop #6118: job 0:6894290843 is in state 'finished'
[2025-11-26 05:23:53] 2025-11-26 04:22:44,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:23:53] 2025-11-26 04:22:44,795 | INFO     | sum of deviations: 2855178393340.8623
[2025-11-26 05:23:53] 2025-11-26 04:22:44,796 | INFO     | mean x: 1764085053.3697536
[2025-11-26 05:23:53] 2025-11-26 04:22:44,796 | INFO     | mean y: 2858673.331778814
[2025-11-26 05:23:53] 2025-11-26 04:22:44,796 | INFO     | intersect: -4800367514.1059265
[2025-11-26 05:23:53] 2025-11-26 04:22:44,798 | INFO     | chi2: 14.667617731490093
[2025-11-26 05:23:53] 2025-11-26 04:22:44,805 | INFO     | sum of square deviations: 1038180074780.3735
[2025-11-26 05:23:53] 2025-11-26 04:22:44,892 | INFO     | sum of deviations: 3370145433728.6377
[2025-11-26 05:23:53] 2025-11-26 04:22:44,893 | INFO     | mean x: 1764084900.8743315
[2025-11-26 05:23:53] 2025-11-26 04:22:44,893 | INFO     | mean y: 2866192.1363636362
[2025-11-26 05:23:53] 2025-11-26 04:22:44,893 | INFO     | intersect: -5723715176.369454
[2025-11-26 05:23:53] 2025-11-26 04:22:44,895 | INFO     | chi2: 11.274249425126635
[2025-11-26 05:23:53] 2025-11-26 04:22:44,895 | INFO     | current chi2=11.274249425126635 (change=23.13510188555155 %)
[2025-11-26 05:23:53] 2025-11-26 04:22:44,895 | INFO     | right removable region: 1495
[2025-11-26 05:23:53] 2025-11-26 04:22:44,897 | INFO     | sum of square deviations: 1038178820620.3732
[2025-11-26 05:23:53] 2025-11-26 04:22:44,967 | INFO     | sum of deviations: 2379254954013.743
[2025-11-26 05:23:53] 2025-11-26 04:22:44,967 | INFO     | mean x: 1764085205.8743315
[2025-11-26 05:23:53] 2025-11-26 04:22:44,967 | INFO     | mean y: 2865618.743315508
[2025-11-26 05:23:53] 2025-11-26 04:22:44,967 | INFO     | intersect: -4039991336.1604424
[2025-11-26 05:23:53] 2025-11-26 04:22:44,969 | INFO     | chi2: 11.982545345014286
[2025-11-26 05:23:53] 2025-11-26 04:22:44,969 | INFO     | current chi2=11.982545345014286 (change=18.30612465929755 %)
[2025-11-26 05:23:53] 2025-11-26 04:22:44,969 | INFO     | left removable region: 10
[2025-11-26 05:23:53] 2025-11-26 04:22:44,972 | INFO     | sum of square deviations: 1015446232060.508
[2025-11-26 05:23:53] 2025-11-26 04:22:45,035 | INFO     | sum of deviations: 2900352709697.5312
[2025-11-26 05:23:53] 2025-11-26 04:22:45,036 | INFO     | mean x: 1764085175.3818183
[2025-11-26 05:23:53] 2025-11-26 04:22:45,036 | INFO     | mean y: 2876372.293602694
[2025-11-26 05:23:53] 2025-11-26 04:22:45,036 | INFO     | intersect: -5035764825.058364
[2025-11-26 05:23:53] 2025-11-26 04:22:45,038 | INFO     | chi2: 7.741418190632298
[2025-11-26 05:23:53] 2025-11-26 04:22:45,038 | INFO     | current memory leak: 2.86 B/s (using 1485 data points, chi2=7.74)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | ..............................
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . Timing measurements:
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . get job = 0 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . initial setup = 2 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . payload setup = 10 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . stage-in = 0 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . payload execution = 91580 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,040 | INFO     | . stage-out = 5 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,041 | INFO     | . log creation = 1 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,041 | INFO     | ..............................
[2025-11-26 05:23:53] 2025-11-26 04:22:45,157 | INFO     | 
[2025-11-26 05:23:53] 2025-11-26 04:22:45,157 | INFO     | job summary report
[2025-11-26 05:23:53] 2025-11-26 04:22:45,157 | INFO     | --------------------------------------------------
[2025-11-26 05:23:53] 2025-11-26 04:22:45,157 | INFO     | PanDA job id: 6894290843
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | task id: 47533967
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | errors: (none)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | pilot state: finished 
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | transexitcode: 0
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | exeerrorcode: 0
[2025-11-26 05:23:53] 2025-11-26 04:22:45,158 | INFO     | exeerrordiag: 
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | exitcode: 0
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | exitmsg: OK
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | cpuconsumptiontime: 334208 s
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | nevents: 1000
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | neventsw: 0
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | pid: 9470
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | pgrp: 9470
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | corecount: 8
[2025-11-26 05:23:53] 2025-11-26 04:22:45,159 | INFO     | event service: False
[2025-11-26 05:23:53] 2025-11-26 04:22:45,160 | INFO     | sizes: {0: 2283430, 1: 2284287, 2: 2284287, 10: 2284577, 13: 2284605, 91594: 2348830, 91595: 2348957, 91601: 2358014, 91604: 2358070, 91701: 2358316}
[2025-11-26 05:23:53] 2025-11-26 04:22:45,160 | INFO     | --------------------------------------------------
[2025-11-26 05:23:53] 2025-11-26 04:22:45,160 | INFO     | 
[2025-11-26 05:23:53] 2025-11-26 04:22:45,160 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-26 05:23:53] 2025-11-26 04:22:45,326 | INFO     | time since job start (91723s) is within the limit (172800.0s)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,636 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,637 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | job 6894290843 has completed (purged errors)
[2025-11-26 05:23:53] 2025-11-26 04:22:45,639 | INFO     | overall cleanup function is called
[2025-11-26 05:23:53] 2025-11-26 04:22:46,658 | INFO     | --- collectZombieJob: --- 10, [9470]
[2025-11-26 05:23:53] 2025-11-26 04:22:46,658 | INFO     | zombie collector waiting for pid 9470
[2025-11-26 05:23:53] 2025-11-26 04:22:46,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:23:53] 2025-11-26 04:22:46,659 | INFO     | collected zombie processes
[2025-11-26 05:23:53] 2025-11-26 04:22:46,659 | INFO     | will attempt to kill all subprocesses of pid=9470
[2025-11-26 05:23:53] 2025-11-26 04:22:46,764 | INFO     | process IDs to be killed: [9470] (in reverse order)
[2025-11-26 05:23:53] 2025-11-26 04:22:47,425 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:23:53] 2025-11-26 04:22:47,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:23:53] 2025-11-26 04:22:47,428 | INFO     | did not find any defunct processes belonging to 9470
[2025-11-26 05:23:53] 2025-11-26 04:22:47,431 | INFO     | did not find any defunct processes belonging to 9470
[2025-11-26 05:23:53] 2025-11-26 04:22:47,480 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:23:53] 2025-11-26 04:22:47,480 | INFO     | ready for new job
[2025-11-26 05:23:53] 2025-11-26 04:22:47,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:23:53] 2025-11-26 04:22:47,486 | INFO     | ***************************************
[2025-11-26 05:23:53] 2025-11-26 04:22:47,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:23:53] 2025-11-26 04:22:47,486 | INFO     | ***************************************
[2025-11-26 05:23:53] 2025-11-26 04:22:47,487 | INFO     | 
[2025-11-26 05:23:53] 2025-11-26 04:22:47,487 | INFO     | pilot is running in a VM
[2025-11-26 05:23:53] 2025-11-26 04:22:47,487 | INFO     | architecture information:
[2025-11-26 05:23:53] 2025-11-26 04:22:47,489 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:23:53] 2025-11-26 04:22:47,721 | INFO     | cat /etc/os-release:
[2025-11-26 05:23:53] NAME="CentOS Linux"
[2025-11-26 05:23:53] VERSION="7 (Core)"
[2025-11-26 05:23:53] ID="centos"
[2025-11-26 05:23:53] ID_LIKE="rhel fedora"
[2025-11-26 05:23:53] VERSION_ID="7"
[2025-11-26 05:23:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:23:53] ANSI_COLOR="0;31"
[2025-11-26 05:23:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:23:53] HOME_URL="https://www.centos.org/"
[2025-11-26 05:23:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:23:53] 
[2025-11-26 05:23:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:23:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:23:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:23:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:23:53] 
[2025-11-26 05:23:53] 2025-11-26 04:22:47,721 | INFO     | ***************************************
[2025-11-26 05:23:53] 2025-11-26 04:22:48,223 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-26 05:23:53] 2025-11-26 04:22:48,523 | INFO     | sufficient remaining disk space (495100887040 B)
[2025-11-26 05:23:53] 2025-11-26 04:22:48,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:23:53] 2025-11-26 04:22:48,524 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:23:53] 2025-11-26 04:22:48,524 | INFO     | update_server=False
[2025-11-26 05:23:53] 2025-11-26 04:22:48,524 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:23:53] 2025-11-26 04:22:48,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:23:53] 2025-11-26 04:22:48,525 | INFO     | aborting loop
[2025-11-26 05:23:53] 2025-11-26 04:22:48,689 | INFO     | all data control threads have been joined
[2025-11-26 05:23:53] 2025-11-26 04:22:48,779 | INFO     | all job control threads have been joined
[2025-11-26 05:23:53] 2025-11-26 04:22:48,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:23:53] 2025-11-26 04:22:49,044 | INFO     | all payload control threads have been joined
[2025-11-26 05:23:53] 2025-11-26 04:22:49,529 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,531 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,541 | INFO     | [job] validate thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,570 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,695 | INFO     | [data] control thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,785 | INFO     | [job] control thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:23:53] 2025-11-26 04:22:49,860 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:49,891 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,050 | INFO     | [payload] control thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:23:53] 2025-11-26 04:22:50,209 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,407 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,835 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:50,878 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:51,176 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:22:53,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:23:53] 2025-11-26 04:23:18,522 | INFO     | PID=2919 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 05:23:53] 2025-11-26 04:23:18,522 | INFO     | .. there are 9 such processes running
[2025-11-26 05:23:53] 2025-11-26 04:23:18,523 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:23:53] 2025-11-26 04:23:18,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:23:53] 2025-11-26 04:23:18,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:23:53] 2025-11-26 04:23:42,543 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:23:53] 2025-11-26 04:23:44,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683928913728)>', '<ExcThread(monitor, started 140683633473280)>']
[2025-11-26 05:23:53] 2025-11-26 04:23:44,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:23:53] 2025-11-26 04:23:44,680 | INFO     | [monitor] control thread has ended
[2025-11-26 05:23:53] 2025-11-26 04:23:49,273 | INFO     | all workflow threads have been joined
[2025-11-26 05:23:53] 2025-11-26 04:23:49,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:23:53] 2025-11-26 04:23:49,273 | INFO     | traces error code: 0
[2025-11-26 05:23:53] 2025-11-26 04:23:49,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:23:53] 2025-11-26 04:23:49,433 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:23:53] 2025-11-26 04:23:49,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:23:53] 2025-11-26 04:23:49,450 [wrapper] pilotpid: 2919
[2025-11-26 05:23:53] 2025-11-26 04:23:49,479 [wrapper] Pilot exit status: 0
[2025-11-26 05:23:53] 2025-11-26 04:23:49,801 [wrapper] pandaids: 6894290843
[2025-11-26 05:23:53] 2025-11-26 04:23:50,424 [wrapper] cleanup supervisor_pilot  3123 2920
[2025-11-26 05:23:53] 2025-11-26 04:23:50,450 [wrapper] Test setup, not cleaning
[2025-11-26 05:23:53] 2025-11-26 04:23:50,474 [wrapper] apfmon messages muted
[2025-11-26 05:23:53] 2025-11-26 04:23:50,479 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:23:53] 2025-11-26 04:23:50,484 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:23:53]  *** Error codes and diagnostics ***
[2025-11-26 05:23:53]     "exeErrorCode": 0,
[2025-11-26 05:23:53]     "exeErrorDiag": "",
[2025-11-26 05:23:53]     "pilotErrorCode": 0,
[2025-11-26 05:23:53]     "pilotErrorDiag": "",
[2025-11-26 05:23:53]  *** Listing of results directory ***
[2025-11-26 05:23:53] total 1328012
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:49 pilot3.tar.gz
[2025-11-26 05:23:53] -rwx------. 1 boinc boinc     36292 Nov 21 12:57 runpilot2-wrapper.sh
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:57 queuedata.json
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc       100 Nov 25 03:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:23:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 03:52 run_atlas
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc       105 Nov 25 03:52 job.xml
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc      6392 Nov 25 03:52 init_data.xml
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc 411103944 Nov 25 03:52 EVNT.47493127._002433.pool.root.1
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 03:52 start_atlas.sh
[2025-11-26 05:23:53] drwxrwx--x. 2 boinc boinc        68 Nov 25 03:52 shared
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc    590097 Nov 25 03:52 input.tar.gz
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc         0 Nov 25 03:52 boinc_lockfile
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc      2784 Nov 25 03:52 pandaJob.out
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc    991801 Nov 25 03:54 agis_schedconf.cvmfs.json
[2025-11-26 05:23:53] drwx------. 5 boinc boinc      4096 Nov 25 03:54 pilot3
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc       533 Nov 26 04:59 boinc_task_state.xml
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc 915417120 Nov 26 05:19 HITS.47533967._004050.pool.root.1
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc      1033 Nov 26 05:20 memory_monitor_summary.json
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc   1516240 Nov 26 05:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc   2553664 Nov 26 05:21 log.47533967._004050.job.log.tgz.1
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc      8626 Nov 26 05:22 heartbeat.json
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc        95 Nov 26 05:23 pilot_heartbeat.json
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc        29 Nov 26 05:23 wrapper_checkpoint.txt
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc      8192 Nov 26 05:23 boinc_mmap_file
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc      4884 Nov 26 05:23 pilotlog.txt
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc  12173458 Nov 26 05:23 log.47533967._004050.job.log.1
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc       353 Nov 26 05:23 output.list
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc       620 Nov 26 05:23 runtime_log
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc  14745600 Nov 26 05:23 result.tar.gz
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc      8833 Nov 26 05:23 runtime_log.err
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc       662 Nov 26 05:23 k9iNDmdweg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUOJKDmpdRY0m.diag
[2025-11-26 05:23:53] -rw-r--r--. 1 boinc boinc     21427 Nov 26 05:23 stderr.txt
[2025-11-26 05:23:53] HITS file was successfully produced:
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc 915417120 Nov 26 05:19 shared/HITS.pool.root.1
[2025-11-26 05:23:53]  *** Contents of shared directory: ***
[2025-11-26 05:23:53] total 1310432
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc 411103944 Nov 25 03:52 ATLAS.root_0
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 03:52 start_atlas.sh
[2025-11-26 05:23:53] -rw-r--r--. 2 boinc boinc    590097 Nov 25 03:52 input.tar.gz
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc 915417120 Nov 26 05:19 HITS.pool.root.1
[2025-11-26 05:23:53] -rw-------. 1 boinc boinc  14745600 Nov 26 05:23 result.tar.gz
05:23:54 (31471): run_atlas exited; CPU time 334716.423791
05:23:54 (31471): called boinc_finish(0)

</stderr_txt>
]]>

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