Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:09:27 (1485434): wrapper (7.7.26015): starting
00:09:27 (1485434): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 00:09:27] Arguments: --nthreads 3
[2025-11-25 00:09:27] Threads: 3
[2025-11-25 00:09:27] Checking for CVMFS
[2025-11-25 00:09:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:09:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:09:28] 2.9.2.0 281178 8940 95900 153261 1 81 35287836 36864000 0 130560 0 3350721 99.922 476416 7406 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 00:09:28] CVMFS is ok
[2025-11-25 00:09:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:09:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:09:28] Further information can be found at the LHC@home message board.
[2025-11-25 00:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:09:28] Checking for apptainer binary...
[2025-11-25 00:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:09:28] Running /usr/bin/apptainer --version
[2025-11-25 00:09:28] apptainer version 1.4.1-1.1
[2025-11-25 00:09:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:09:28] magicA161
[2025-11-25 00:09:28] apptainer works
[2025-11-25 00:09:28] Set ATHENA_PROC_NUMBER=3
[2025-11-25 00:09:28] Set ATHENA_CORE_NUMBER=3
[2025-11-25 00:09:28] Starting ATLAS job with PandaID=6894266058
[2025-11-25 00:09:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:55:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:55:19] 2025-11-25 06:54:48,271 | INFO     | did not find any defunct processes belonging to 1495591
[2025-11-25 07:55:19] 2025-11-25 06:54:48,272 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:55:19] 2025-11-25 06:54:48,272 | INFO     | ready for new job
[2025-11-25 07:55:19] 2025-11-25 06:54:48,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:55:19] 2025-11-25 06:54:48,273 | INFO     | ***************************************
[2025-11-25 07:55:19] 2025-11-25 06:54:48,273 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:55:19] 2025-11-25 06:54:48,273 | INFO     | ***************************************
[2025-11-25 07:55:19] 2025-11-25 06:54:48,273 | INFO     | 
[2025-11-25 07:55:19] 2025-11-25 06:54:48,273 | INFO     | architecture information:
[2025-11-25 07:55:19] 2025-11-25 06:54:48,274 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:55:19] 2025-11-25 06:54:48,282 | INFO     | cat /etc/os-release:
[2025-11-25 07:55:19] NAME="CentOS Linux"
[2025-11-25 07:55:19] VERSION="7 (Core)"
[2025-11-25 07:55:19] ID="centos"
[2025-11-25 07:55:19] ID_LIKE="rhel fedora"
[2025-11-25 07:55:19] VERSION_ID="7"
[2025-11-25 07:55:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:55:19] ANSI_COLOR="0;31"
[2025-11-25 07:55:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:55:19] HOME_URL="https://www.centos.org/"
[2025-11-25 07:55:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:55:19] 
[2025-11-25 07:55:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:55:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:55:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:55:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:55:19] 
[2025-11-25 07:55:19] 2025-11-25 06:54:48,282 | INFO     | ***************************************
[2025-11-25 07:55:19] 2025-11-25 06:54:48,786 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 07:55:19] 2025-11-25 06:54:48,797 | INFO     | sufficient remaining disk space (366551760896 B)
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | INFO     | update_server=False
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:55:19] 2025-11-25 06:54:48,798 | INFO     | aborting loop
[2025-11-25 07:55:19] 2025-11-25 06:54:49,029 | INFO     | all job control threads have been joined
[2025-11-25 07:55:19] 2025-11-25 06:54:49,103 | INFO     | all data control threads have been joined
[2025-11-25 07:55:19] 2025-11-25 06:54:49,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:55:19] 2025-11-25 06:54:49,543 | INFO     | all payload control threads have been joined
[2025-11-25 07:55:19] 2025-11-25 06:54:49,803 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:49,804 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:49,804 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,035 | INFO     | [job] control thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,108 | INFO     | [data] control thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,178 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,391 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,549 | INFO     | [payload] control thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:55:19] 2025-11-25 06:54:50,725 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,836 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:50,917 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:51,261 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:51,279 | INFO     | [job] validate thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:51,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:51,298 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:54:54,714 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:55:19] 2025-11-25 06:55:09,420 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:55:19] 2025-11-25 06:55:11,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633895544640)>', '<ExcThread(monitor, started 139633270712064)>']
[2025-11-25 07:55:19] 2025-11-25 06:55:16,145 | INFO     | all workflow threads have been joined
[2025-11-25 07:55:19] 2025-11-25 06:55:16,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:55:19] 2025-11-25 06:55:16,145 | INFO     | traces error code: 0
[2025-11-25 07:55:19] 2025-11-25 06:55:16,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | INFO     | PID=1489150 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:55:19] 2025-11-25 06:55:19,203 | INFO     | [monitor] control thread has ended
[2025-11-25 07:55:19] 2025-11-25 06:55:19,249 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:55:19] 2025-11-25 06:55:19,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:55:19] 2025-11-25 06:55:19,254 [wrapper] pilotpid: 1489150
[2025-11-25 07:55:19] 2025-11-25 06:55:19,256 [wrapper] Pilot exit status: 0
[2025-11-25 07:55:19] 2025-11-25 06:55:19,263 [wrapper] pandaids: 6894266058
[2025-11-25 07:55:19] 2025-11-25 06:55:19,278 [wrapper] cleanup supervisor_pilot 1546307 1489151
[2025-11-25 07:55:19] 2025-11-25 06:55:19,281 [wrapper] Test setup, not cleaning
[2025-11-25 07:55:19] 2025-11-25 06:55:19,283 [wrapper] apfmon messages muted
[2025-11-25 07:55:19] 2025-11-25 06:55:19,285 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:55:19] 2025-11-25 06:55:19,288 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:55:19]  *** Error codes and diagnostics ***
[2025-11-25 07:55:19]     "exeErrorCode": 0,
[2025-11-25 07:55:19]     "exeErrorDiag": "",
[2025-11-25 07:55:19]     "pilotErrorCode": 0,
[2025-11-25 07:55:19]     "pilotErrorDiag": "",
[2025-11-25 07:55:19]  *** Listing of results directory ***
[2025-11-25 07:55:19] total 1308328
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:09 queuedata.json
[2025-11-25 07:55:19] -rwx------ 1 boinc boinc     36292 Nov 21 06:09 runpilot2-wrapper.sh
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc       100 Nov 25 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:55:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 00:09 run_atlas
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc       105 Nov 25 00:09 job.xml
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc 410794676 Nov 25 00:09 EVNT.47493127._002224.pool.root.1
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc    590105 Nov 25 00:09 input.tar.gz
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:09 start_atlas.sh
[2025-11-25 07:55:19] drwxrwx--x 2 boinc boinc      4096 Nov 25 00:09 shared
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:09 boinc_setup_complete
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      6450 Nov 25 00:09 init_data.xml
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc         0 Nov 25 00:09 boinc_lockfile
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      2786 Nov 25 00:09 pandaJob.out
[2025-11-25 07:55:19] -rw------- 1 boinc boinc    991801 Nov 25 00:09 agis_schedconf.cvmfs.json
[2025-11-25 07:55:19] drwx------ 5 boinc boinc      4096 Nov 25 00:09 pilot3
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc       531 Nov 25 07:51 boinc_task_state.xml
[2025-11-25 07:55:19] -rw------- 1 boinc boinc 914870097 Nov 25 07:54 HITS.47533967._001960.pool.root.1
[2025-11-25 07:55:19] -rw------- 1 boinc boinc      1020 Nov 25 07:54 memory_monitor_summary.json
[2025-11-25 07:55:19] -rw------- 1 boinc boinc   1516227 Nov 25 07:54 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:55:19] -rw------- 1 boinc boinc   1150544 Nov 25 07:54 log.47533967._001960.job.log.tgz.1
[2025-11-25 07:55:19] -rw------- 1 boinc boinc      8567 Nov 25 07:54 heartbeat.json
[2025-11-25 07:55:19] -rw------- 1 boinc boinc        95 Nov 25 07:54 pilot_heartbeat.json
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      8192 Nov 25 07:55 boinc_mmap_file
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc        28 Nov 25 07:55 wrapper_checkpoint.txt
[2025-11-25 07:55:19] -rw------- 1 boinc boinc       747 Nov 25 07:55 pilotlog.txt
[2025-11-25 07:55:19] -rw------- 1 boinc boinc   3932996 Nov 25 07:55 log.47533967._001960.job.log.1
[2025-11-25 07:55:19] -rw------- 1 boinc boinc       353 Nov 25 07:55 output.list
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc       620 Nov 25 07:55 runtime_log
[2025-11-25 07:55:19] -rw------- 1 boinc boinc   5099520 Nov 25 07:55 result.tar.gz
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      8913 Nov 25 07:55 runtime_log.err
[2025-11-25 07:55:19] -rw------- 1 boinc boinc       668 Nov 25 07:55 OiwLDmXZYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCLHKDmofqRMm.diag
[2025-11-25 07:55:19] -rw-r--r-- 1 boinc boinc      9866 Nov 25 07:55 stderr.txt
[2025-11-25 07:55:19] HITS file was successfully produced:
[2025-11-25 07:55:19] -rw------- 1 boinc boinc 914870097 Nov 25 07:54 shared/HITS.pool.root.1
[2025-11-25 07:55:19]  *** Contents of shared directory: ***
[2025-11-25 07:55:19] total 1300180
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc 410794676 Nov 25 00:09 ATLAS.root_0
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc    590105 Nov 25 00:09 input.tar.gz
[2025-11-25 07:55:19] -rw-r--r-- 2 boinc boinc     15847 Nov 25 00:09 start_atlas.sh
[2025-11-25 07:55:19] -rw------- 1 boinc boinc 914870097 Nov 25 07:54 HITS.pool.root.1
[2025-11-25 07:55:19] -rw------- 1 boinc boinc   5099520 Nov 25 07:55 result.tar.gz
07:55:20 (1485434): run_atlas exited; CPU time 82396.230480
07:55:20 (1485434): called boinc_finish(0)

</stderr_txt>
]]>

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