Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:09:31 (10444): wrapper (7.7.26015): starting
02:09:31 (10444): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 02:09:31] Arguments: --nthreads 8
[2025-11-22 02:09:31] Threads: 8
[2025-11-22 02:09:31] Checking for CVMFS
[2025-11-22 02:09:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 02:09:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 02:09:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 02:09:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 02:09:32] 2.11.2.0 2756 67222 87084 153163 2 80 19764332 20275201 1 130560 0 20257328 99.900 3326768 30236 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 02:09:32] CVMFS is ok
[2025-11-22 02:09:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 02:09:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 02:09:32] Further information can be found at the LHC@home message board.
[2025-11-22 02:09:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 02:09:32] Checking for apptainer binary...
[2025-11-22 02:09:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 02:09:32] Running /usr/bin/apptainer --version
[2025-11-22 02:09:32] apptainer version 1.3.2-1.el7
[2025-11-22 02:09:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 02:09:33] c-115-14.aglt2.org
[2025-11-22 02:09:33] apptainer works
[2025-11-22 02:09:33] Set ATHENA_PROC_NUMBER=8
[2025-11-22 02:09:33] Set ATHENA_CORE_NUMBER=8
[2025-11-22 02:09:33] Starting ATLAS job with PandaID=6894290829
[2025-11-22 02:09:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:31:28 (1847): wrapper (7.7.26015): starting
07:31:28 (1847): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 07:31:28] Arguments: --nthreads 8
[2025-11-22 07:31:28] Threads: 8
[2025-11-22 07:31:28] This job has been restarted, cleaning up previous attempt
[2025-11-22 07:31:28] Checking for CVMFS
[2025-11-22 07:31:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 07:31:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 07:31:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 07:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 07:31:28] 2.11.2.0 2756 67544 93668 153172 1 49 20174623 20275200 1 130560 0 20395600 99.901 3338681 30264 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 07:31:28] CVMFS is ok
[2025-11-22 07:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:31:28] Further information can be found at the LHC@home message board.
[2025-11-22 07:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:31:28] Checking for apptainer binary...
[2025-11-22 07:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 07:31:28] Running /usr/bin/apptainer --version
[2025-11-22 07:31:28] apptainer version 1.3.2-1.el7
[2025-11-22 07:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:31:30] c-115-14.aglt2.org
[2025-11-22 07:31:30] apptainer works
[2025-11-22 07:31:30] Set ATHENA_PROC_NUMBER=8
[2025-11-22 07:31:30] Set ATHENA_CORE_NUMBER=8
[2025-11-22 07:31:30] Starting ATLAS job with PandaID=6894290829
[2025-11-22 07:31:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:03:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:03:03] 2025-11-23 00:02:24,953 | INFO     | monitor loop #3056: job 0:6894290829 is in state 'finished'
[2025-11-22 19:03:03] 2025-11-23 00:02:24,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:03:03] 2025-11-23 00:02:25,423 | INFO     | time since job start (41437s) is within the limit (172800.0s)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,116 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 19:03:03] 2025-11-23 00:02:27,121 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-22 19:03:03] 2025-11-23 00:02:27,123 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894290829/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,124 | INFO     | extracted standard info from prmon json
[2025-11-22 19:03:03] 2025-11-23 00:02:27,124 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:03:03] 2025-11-23 00:02:27,124 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:03:03] 2025-11-23 00:02:27,139 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:03:03] 2025-11-23 00:02:27,140 | INFO     | sum of square deviations: 97070985711.72612
[2025-11-22 19:03:03] 2025-11-23 00:02:27,151 | INFO     | sum of deviations: 695406988609.231
[2025-11-22 19:03:03] 2025-11-23 00:02:27,151 | INFO     | mean x: 1763835418.6215022
[2025-11-22 19:03:03] 2025-11-23 00:02:27,151 | INFO     | mean y: 3151891.518409426
[2025-11-22 19:03:03] 2025-11-23 00:02:27,151 | INFO     | intersect: -12632791463.466091
[2025-11-22 19:03:03] 2025-11-23 00:02:27,152 | INFO     | chi2: 5.713325772620812
[2025-11-22 19:03:03] 2025-11-23 00:02:27,153 | INFO     | sum of square deviations: 94942451252.2803
[2025-11-22 19:03:03] 2025-11-23 00:02:27,164 | INFO     | sum of deviations: 925861169801.232
[2025-11-22 19:03:03] 2025-11-23 00:02:27,164 | INFO     | mean x: 1763835266.1261127
[2025-11-22 19:03:03] 2025-11-23 00:02:27,164 | INFO     | mean y: 3168395.6913946588
[2025-11-22 19:03:03] 2025-11-23 00:02:27,164 | INFO     | intersect: -17197425872.64932
[2025-11-22 19:03:03] 2025-11-23 00:02:27,165 | INFO     | chi2: 2.9725093272097074
[2025-11-22 19:03:03] 2025-11-23 00:02:27,165 | INFO     | current chi2=2.9725093272097074 (change=47.97234665920056 %)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,166 | INFO     | sum of square deviations: 92845225348.06581
[2025-11-22 19:03:03] 2025-11-23 00:02:27,177 | INFO     | sum of deviations: 991102948038.1843
[2025-11-22 19:03:03] 2025-11-23 00:02:27,177 | INFO     | mean x: 1763835113.6292975
[2025-11-22 19:03:03] 2025-11-23 00:02:27,178 | INFO     | mean y: 3173121.500747384
[2025-11-22 19:03:03] 2025-11-23 00:02:27,178 | INFO     | intersect: -18825389945.8803
[2025-11-22 19:03:03] 2025-11-23 00:02:27,179 | INFO     | chi2: 2.517555927627881
[2025-11-22 19:03:03] 2025-11-23 00:02:27,179 | INFO     | current chi2=2.517555927627881 (change=15.30536491230764 %)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,179 | INFO     | right removable region: 668
[2025-11-22 19:03:03] 2025-11-23 00:02:27,180 | INFO     | sum of square deviations: 94942235007.53119
[2025-11-22 19:03:03] 2025-11-23 00:02:27,190 | INFO     | sum of deviations: 487387218830.6377
[2025-11-22 19:03:03] 2025-11-23 00:02:27,191 | INFO     | mean x: 1763835571.124629
[2025-11-22 19:03:03] 2025-11-23 00:02:27,191 | INFO     | mean y: 3166766.0519287833
[2025-11-22 19:03:03] 2025-11-23 00:02:27,191 | INFO     | intersect: -9051506461.48258
[2025-11-22 19:03:03] 2025-11-23 00:02:27,192 | INFO     | chi2: 3.3210408274830536
[2025-11-22 19:03:03] 2025-11-23 00:02:27,192 | INFO     | current chi2=3.3210408274830536 (change=41.8720206119171 %)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,193 | INFO     | sum of square deviations: 92844915956.82687
[2025-11-22 19:03:03] 2025-11-23 00:02:27,204 | INFO     | sum of deviations: 448546637722.93176
[2025-11-22 19:03:03] 2025-11-23 00:02:27,204 | INFO     | mean x: 1763835723.624813
[2025-11-22 19:03:03] 2025-11-23 00:02:27,204 | INFO     | mean y: 3169588.4499252615
[2025-11-22 19:03:03] 2025-11-23 00:02:27,204 | INFO     | intersect: -8518164888.231565
[2025-11-22 19:03:03] 2025-11-23 00:02:27,205 | INFO     | chi2: 3.2869071780861123
[2025-11-22 19:03:03] 2025-11-23 00:02:27,205 | INFO     | current chi2=3.2869071780861123 (change=1.027799752248468 %)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,205 | INFO     | left removable region: 20
[2025-11-22 19:03:03] 2025-11-23 00:02:27,206 | INFO     | sum of square deviations: 84373431577.31938
[2025-11-22 19:03:03] 2025-11-23 00:02:27,216 | INFO     | sum of deviations: 695956612462.1859
[2025-11-22 19:03:03] 2025-11-23 00:02:27,216 | INFO     | mean x: 1763835693.1342592
[2025-11-22 19:03:03] 2025-11-23 00:02:27,216 | INFO     | mean y: 3194686.8024691357
[2025-11-22 19:03:03] 2025-11-23 00:02:27,216 | INFO     | intersect: -14545853407.90122
[2025-11-22 19:03:03] 2025-11-23 00:02:27,217 | INFO     | chi2: 0.05799160143341782
[2025-11-22 19:03:03] 2025-11-23 00:02:27,218 | INFO     | current memory leak: 8.25 B/s (using 648 data points, chi2=0.06)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,218 | INFO     | could have reported an average CPU frequency of 2385 MHz (26 samples)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,218 | INFO     | ..............................
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . Timing measurements:
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . get job = 0 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . initial setup = 2 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . payload setup = 8 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . stage-in = 0 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,219 | INFO     | . payload execution = 41396 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,220 | INFO     | . stage-out = 3 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,220 | INFO     | . log creation = 0 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,220 | INFO     | ..............................
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | 
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | job summary report
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | --------------------------------------------------
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | PanDA job id: 6894290829
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | task id: 47533967
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | errors: (none)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:03:03] 2025-11-23 00:02:27,323 | INFO     | pilot state: finished 
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | transexitcode: 0
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | exeerrorcode: 0
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | exeerrordiag: 
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | exitcode: 0
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | exitmsg: OK
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | cpuconsumptiontime: 321812 s
[2025-11-22 19:03:03] 2025-11-23 00:02:27,324 | INFO     | nevents: 1000
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | neventsw: 0
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | pid: 12255
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | pgrp: 12255
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | corecount: 8
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | event service: False
[2025-11-22 19:03:03] 2025-11-23 00:02:27,325 | INFO     | sizes: {0: 2298584, 1: 2298783, 6: 2299045, 11: 2299073, 41408: 2343200, 41409: 2343199, 41412: 2352377, 41413: 2352433, 41422: 2352679}
[2025-11-22 19:03:03] 2025-11-23 00:02:27,326 | INFO     | --------------------------------------------------
[2025-11-22 19:03:03] 2025-11-23 00:02:27,326 | INFO     | 
[2025-11-22 19:03:03] 2025-11-23 00:02:27,326 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:03:03] 2025-11-23 00:02:27,353 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,354 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:03:03] 2025-11-23 00:02:27,357 | INFO     | job 6894290829 has completed (purged errors)
[2025-11-22 19:03:03] 2025-11-23 00:02:27,357 | INFO     | overall cleanup function is called
[2025-11-22 19:03:03] 2025-11-23 00:02:28,373 | INFO     | --- collectZombieJob: --- 10, [12255]
[2025-11-22 19:03:03] 2025-11-23 00:02:28,373 | INFO     | zombie collector waiting for pid 12255
[2025-11-22 19:03:03] 2025-11-23 00:02:28,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:03:03] 2025-11-23 00:02:28,373 | INFO     | collected zombie processes
[2025-11-22 19:03:03] 2025-11-23 00:02:28,374 | INFO     | will attempt to kill all subprocesses of pid=12255
[2025-11-22 19:03:03] 2025-11-23 00:02:28,460 | INFO     | process IDs to be killed: [12255] (in reverse order)
[2025-11-22 19:03:03] 2025-11-23 00:02:28,514 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:03:03] 2025-11-23 00:02:28,515 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:03:03] 2025-11-23 00:02:28,519 | INFO     | did not find any defunct processes belonging to 12255
[2025-11-22 19:03:03] 2025-11-23 00:02:28,522 | INFO     | did not find any defunct processes belonging to 12255
[2025-11-22 19:03:03] 2025-11-23 00:02:28,525 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:03:03] 2025-11-23 00:02:28,525 | INFO     | ready for new job
[2025-11-22 19:03:03] 2025-11-23 00:02:28,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:03:03] 2025-11-23 00:02:28,528 | INFO     | ***************************************
[2025-11-22 19:03:03] 2025-11-23 00:02:28,529 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:03:03] 2025-11-23 00:02:28,529 | INFO     | ***************************************
[2025-11-22 19:03:03] 2025-11-23 00:02:28,529 | INFO     | 
[2025-11-22 19:03:03] 2025-11-23 00:02:28,529 | INFO     | architecture information:
[2025-11-22 19:03:03] 2025-11-23 00:02:28,530 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:03:03] 2025-11-23 00:02:28,548 | INFO     | cat /etc/os-release:
[2025-11-22 19:03:03] NAME="CentOS Linux"
[2025-11-22 19:03:03] VERSION="7 (Core)"
[2025-11-22 19:03:03] ID="centos"
[2025-11-22 19:03:03] ID_LIKE="rhel fedora"
[2025-11-22 19:03:03] VERSION_ID="7"
[2025-11-22 19:03:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:03:03] ANSI_COLOR="0;31"
[2025-11-22 19:03:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:03:03] HOME_URL="https://www.centos.org/"
[2025-11-22 19:03:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:03:03] 
[2025-11-22 19:03:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:03:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:03:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:03:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:03:03] 
[2025-11-22 19:03:03] 2025-11-23 00:02:28,548 | INFO     | ***************************************
[2025-11-22 19:03:03] 2025-11-23 00:02:29,052 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:03:03] 2025-11-23 00:02:29,073 | INFO     | sufficient remaining disk space (17452498944 B)
[2025-11-22 19:03:03] 2025-11-23 00:02:29,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:03:03] 2025-11-23 00:02:29,074 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:03:03] 2025-11-23 00:02:29,074 | INFO     | update_server=False
[2025-11-22 19:03:03] 2025-11-23 00:02:29,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:03:03] 2025-11-23 00:02:29,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:03:03] 2025-11-23 00:02:29,075 | INFO     | aborting loop
[2025-11-22 19:03:03] 2025-11-23 00:02:29,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:03:03] 2025-11-23 00:02:29,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:03:03] 2025-11-23 00:02:29,080 | INFO     | all data control threads have been joined
[2025-11-22 19:03:03] 2025-11-23 00:02:29,148 | INFO     | all job control threads have been joined
[2025-11-22 19:03:03] 2025-11-23 00:02:30,079 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,080 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,081 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,085 | INFO     | [data] control thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,154 | INFO     | [job] control thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,187 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,207 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,237 | INFO     | all payload control threads have been joined
[2025-11-22 19:03:03] 2025-11-23 00:02:30,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:03:03] 2025-11-23 00:02:30,457 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:30,811 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:31,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:31,126 | INFO     | [job] validate thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:31,244 | INFO     | [payload] control thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:31,494 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:32,266 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:33,082 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:39,651 | INFO     | job.realtimelogging is not enabled
[2025-11-22 19:03:03] 2025-11-23 00:02:40,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:03:03] 2025-11-23 00:02:56,178 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:03:03] 2025-11-23 00:02:57,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140635525904192)>', '<ExcThread(monitor, started 140634836936448)>']
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | INFO     | PID=5732 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:03:03] 2025-11-23 00:02:58,641 | INFO     | [monitor] control thread has ended
[2025-11-22 19:03:03] 2025-11-23 00:03:02,962 | INFO     | all workflow threads have been joined
[2025-11-22 19:03:03] 2025-11-23 00:03:02,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:03:03] 2025-11-23 00:03:02,963 | INFO     | traces error code: 0
[2025-11-22 19:03:03] 2025-11-23 00:03:02,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:03:03] 2025-11-23 00:03:03,080 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:03:03] 2025-11-23 00:03:03,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:03:03] 2025-11-23 00:03:03,089 [wrapper] pilotpid: 5732
[2025-11-22 19:03:03] 2025-11-23 00:03:03,093 [wrapper] Pilot exit status: 0
[2025-11-22 19:03:03] 2025-11-23 00:03:03,112 [wrapper] pandaids: 6894290829 6894290829
[2025-11-22 19:03:03] 2025-11-23 00:03:03,154 [wrapper] cleanup supervisor_pilot  9848 5733
[2025-11-22 19:03:03] 2025-11-23 00:03:03,159 [wrapper] Test setup, not cleaning
[2025-11-22 19:03:03] 2025-11-23 00:03:03,163 [wrapper] apfmon messages muted
[2025-11-22 19:03:03] 2025-11-23 00:03:03,168 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:03:03] 2025-11-23 00:03:03,172 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:03:03]  *** Error codes and diagnostics ***
[2025-11-22 19:03:03]     "exeErrorCode": 0,
[2025-11-22 19:03:03]     "exeErrorDiag": "",
[2025-11-22 19:03:03]     "pilotErrorCode": 0,
[2025-11-22 19:03:03]     "pilotErrorDiag": "",
[2025-11-22 19:03:03]  *** Listing of results directory ***
[2025-11-22 19:03:03] total 1735104
[2025-11-22 19:03:03] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 06:49 pilot3.tar.gz
[2025-11-22 19:03:03] -rwx------ 1 boincer umatlas     36292 Nov 21 06:52 runpilot2-wrapper.sh
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 06:52 queuedata.json
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas       100 Nov 22 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:03:03] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 02:09 run_atlas
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas       105 Nov 22 02:09 job.xml
[2025-11-22 19:03:03] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 02:09 EVNT.47493127._002432.pool.root.1
[2025-11-22 19:03:03] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 02:09 ATLAS.root_0
[2025-11-22 19:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 02:09 start_atlas.sh
[2025-11-22 19:03:03] drwxrwx--x 2 boincer umatlas      4096 Nov 22 02:09 shared
[2025-11-22 19:03:03] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 02:09 input.tar.gz
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas         0 Nov 22 02:09 boinc_lockfile
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas      2784 Nov 22 07:31 pandaJob.out
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas        57 Nov 22 07:31 setup.sh.local
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas    989768 Nov 22 07:31 agis_schedconf.cvmfs.json
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas       532 Nov 22 18:53 boinc_task_state.xml
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas      5911 Nov 22 18:58 init_data.xml
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas 936043083 Nov 22 19:01 HITS.47533967._004036.pool.root.1
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas      1061 Nov 22 19:02 memory_monitor_summary.json
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas   1526164 Nov 22 19:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas   1927246 Nov 22 19:02 log.47533967._004036.job.log.tgz.1
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas        96 Nov 22 19:02 pilot_heartbeat.json
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas      8660 Nov 22 19:02 heartbeat.json
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 19:02 boinc_mmap_file
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas        29 Nov 22 19:02 wrapper_checkpoint.txt
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas      4817 Nov 22 19:03 pilotlog.txt
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas   5712557 Nov 22 19:03 log.47533967._004036.job.log.1
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas       353 Nov 22 19:03 output.list
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas       620 Nov 22 19:03 runtime_log
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas   7659520 Nov 22 19:03 result.tar.gz
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas      9428 Nov 22 19:03 runtime_log.err
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas       793 Nov 22 19:03 2RtMDmfreg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeaHKDmldZ8ln.diag
[2025-11-22 19:03:03] -rw-r--r-- 1 boincer umatlas     23440 Nov 22 19:03 stderr.txt
[2025-11-22 19:03:03] HITS file was successfully produced:
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas 936043083 Nov 22 19:01 shared/HITS.pool.root.1
[2025-11-22 19:03:03]  *** Contents of shared directory: ***
[2025-11-22 19:03:03] total 1323312
[2025-11-22 19:03:03] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 02:09 ATLAS.root_0
[2025-11-22 19:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 02:09 start_atlas.sh
[2025-11-22 19:03:03] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 02:09 input.tar.gz
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas 936043083 Nov 22 19:01 HITS.pool.root.1
[2025-11-22 19:03:03] -rw------- 1 boincer umatlas   7659520 Nov 22 19:03 result.tar.gz
19:03:05 (1847): run_atlas exited; CPU time 319913.878497
19:03:05 (1847): called boinc_finish(0)

</stderr_txt>
]]>

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