Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:40:59 (29385): wrapper (7.7.26015): starting
23:40:59 (29385): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:40:59] Arguments: --nthreads 8
[2025-11-24 23:40:59] Threads: 8
[2025-11-24 23:40:59] Checking for CVMFS
[2025-11-24 23:41:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:41:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:41:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:41:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:41:02] 2.11.2.0 31060 220200 140688 153261 3 85 21738001 25165824 1027 130560 11 114899143 99.900 45957732 2659 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 23:41:02] CVMFS is ok
[2025-11-24 23:41:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:41:02] Checking for apptainer binary...
[2025-11-24 23:41:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:41:02] Running /usr/bin/apptainer --version
[2025-11-24 23:41:02] apptainer version 1.3.2-1.el7
[2025-11-24 23:41:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:41:43] cg-vwn357.simple-grid.lan
[2025-11-24 23:41:43] apptainer works
[2025-11-24 23:41:43] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:41:43] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:41:43] Starting ATLAS job with PandaID=6894290541
[2025-11-24 23:41:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:40:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:40:09] 2025-11-25 23:39:25,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:09] 2025-11-25 23:39:25,811 | INFO     | time since job start (89589s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:27,597 | INFO     | monitor loop #5994: job 0:6894290541 is in state 'finished'
[2025-11-26 00:40:09] 2025-11-25 23:39:27,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:09] 2025-11-25 23:39:27,818 | INFO     | time since job start (89591s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:27,819 | INFO     | 89604s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 00:40:09] 2025-11-25 23:39:29,826 | INFO     | time since job start (89593s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:30,106 | INFO     | monitor loop #5995: job 0:6894290541 is in state 'finished'
[2025-11-26 00:40:09] 2025-11-25 23:39:30,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:09] 2025-11-25 23:39:31,832 | INFO     | time since job start (89595s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:32,612 | INFO     | monitor loop #5996: job 0:6894290541 is in state 'finished'
[2025-11-26 00:40:09] 2025-11-25 23:39:32,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:09] 2025-11-25 23:39:33,846 | INFO     | time since job start (89597s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:35,117 | INFO     | monitor loop #5997: job 0:6894290541 is in state 'finished'
[2025-11-26 00:40:09] 2025-11-25 23:39:35,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:40:09] 2025-11-25 23:39:35,754 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:40:09] 2025-11-25 23:39:35,755 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 00:40:09] 2025-11-25 23:39:35,757 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6894290541/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:40:09] 2025-11-25 23:39:35,757 | INFO     | extracted standard info from prmon json
[2025-11-26 00:40:09] 2025-11-25 23:39:35,758 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:40:09] 2025-11-25 23:39:35,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:40:09] 2025-11-25 23:39:35,802 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:40:09] 2025-11-25 23:39:35,804 | INFO     | sum of square deviations: 965024928535.5746
[2025-11-26 00:40:09] 2025-11-25 23:39:35,874 | INFO     | time since job start (89599s) is within the limit (172800.0s)
[2025-11-26 00:40:09] 2025-11-25 23:39:35,896 | INFO     | sum of deviations: 3755224855433.8335
[2025-11-26 00:40:09] 2025-11-25 23:39:35,897 | INFO     | mean x: 1764069421.739041
[2025-11-26 00:40:09] 2025-11-25 23:39:35,897 | INFO     | mean y: 2816028.7397260275
[2025-11-26 00:40:09] 2025-11-25 23:39:35,897 | INFO     | intersect: -6861749997.83731
[2025-11-26 00:40:09] 2025-11-25 23:39:35,899 | INFO     | chi2: 33.258650529596174
[2025-11-26 00:40:09] 2025-11-25 23:39:35,901 | INFO     | sum of square deviations: 955144792687.8716
[2025-11-26 00:40:09] 2025-11-25 23:39:35,964 | INFO     | sum of deviations: 4229995057792.6143
[2025-11-26 00:40:09] 2025-11-25 23:39:35,964 | INFO     | mean x: 1764069269.243299
[2025-11-26 00:40:09] 2025-11-25 23:39:35,965 | INFO     | mean y: 2823355.1649484537
[2025-11-26 00:40:09] 2025-11-25 23:39:35,965 | INFO     | intersect: -7809609218.020284
[2025-11-26 00:40:09] 2025-11-25 23:39:35,967 | INFO     | chi2: 30.04851066030254
[2025-11-26 00:40:09] 2025-11-25 23:39:35,967 | INFO     | current chi2=30.04851066030254 (change=9.652044861041485 %)
[2025-11-26 00:40:09] 2025-11-25 23:39:35,967 | INFO     | right removable region: 1454
[2025-11-26 00:40:09] 2025-11-25 23:39:35,969 | INFO     | sum of square deviations: 955143689197.8726
[2025-11-26 00:40:09] 2025-11-25 23:39:36,023 | INFO     | sum of deviations: 3147669697539.3613
[2025-11-26 00:40:09] 2025-11-25 23:39:36,023 | INFO     | mean x: 1764069574.243299
[2025-11-26 00:40:09] 2025-11-25 23:39:36,023 | INFO     | mean y: 2825405.0103092785
[2025-11-26 00:40:09] 2025-11-25 23:39:36,024 | INFO     | intersect: -5810654185.54213
[2025-11-26 00:40:09] 2025-11-25 23:39:36,025 | INFO     | chi2: 28.45957854798681
[2025-11-26 00:40:09] 2025-11-25 23:39:36,026 | INFO     | current chi2=28.45957854798681 (change=14.429545111395223 %)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,026 | INFO     | left removable region: 10
[2025-11-26 00:40:09] 2025-11-25 23:39:36,028 | INFO     | sum of square deviations: 933644177814.7383
[2025-11-26 00:40:09] 2025-11-25 23:39:36,080 | INFO     | sum of deviations: 3175486433545.258
[2025-11-26 00:40:09] 2025-11-25 23:39:36,080 | INFO     | mean x: 1764069543.7527702
[2025-11-26 00:40:09] 2025-11-25 23:39:36,080 | INFO     | mean y: 2842980.6253462606
[2025-11-26 00:40:09] 2025-11-25 23:39:36,081 | INFO     | intersect: -5997064732.748568
[2025-11-26 00:40:09] 2025-11-25 23:39:36,082 | INFO     | chi2: 20.6684532722197
[2025-11-26 00:40:09] 2025-11-25 23:39:36,083 | INFO     | current memory leak: 3.40 B/s (using 1444 data points, chi2=20.67)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | ..............................
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . Timing measurements:
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . get job = 0 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . initial setup = 12 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . payload setup = 156 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . stage-in = 0 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . payload execution = 89185 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . stage-out = 6 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | . log creation = 2 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,085 | INFO     | ..............................
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | 
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | job summary report
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | --------------------------------------------------
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | PanDA job id: 6894290541
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | task id: 47533967
[2025-11-26 00:40:09] 2025-11-25 23:39:36,224 | INFO     | errors: (none)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | pilot state: finished 
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | transexitcode: 0
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | exeerrorcode: 0
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | exeerrordiag: 
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | exitcode: 0
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | exitmsg: OK
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | cpuconsumptiontime: 341719 s
[2025-11-26 00:40:09] 2025-11-25 23:39:36,225 | INFO     | nevents: 1000
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | neventsw: 0
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | pid: 7237
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | pgrp: 7237
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | corecount: 8
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | event service: False
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | sizes: {0: 2283431, 1: 2284117, 2: 2284316, 13: 2284316, 23: 2284372, 34: 2284400, 45: 2284556, 55: 2284584, 66: 2284612, 77: 2284640, 88: 2284696, 98: 2285206, 99
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | --------------------------------------------------
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | 
[2025-11-26 00:40:09] 2025-11-25 23:39:36,226 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-26 00:40:09] 2025-11-25 23:39:36,269 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,269 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,270 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,271 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:40:09] 2025-11-25 23:39:36,272 | INFO     | job 6894290541 has completed (purged errors)
[2025-11-26 00:40:09] 2025-11-25 23:39:36,272 | INFO     | overall cleanup function is called
[2025-11-26 00:40:09] 2025-11-25 23:39:37,288 | INFO     | --- collectZombieJob: --- 10, [7237]
[2025-11-26 00:40:09] 2025-11-25 23:39:37,289 | INFO     | zombie collector waiting for pid 7237
[2025-11-26 00:40:09] 2025-11-25 23:39:37,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:40:09] 2025-11-25 23:39:37,289 | INFO     | collected zombie processes
[2025-11-26 00:40:09] 2025-11-25 23:39:37,289 | INFO     | will attempt to kill all subprocesses of pid=7237
[2025-11-26 00:40:09] 2025-11-25 23:39:37,387 | INFO     | process IDs to be killed: [7237] (in reverse order)
[2025-11-26 00:40:09] 2025-11-25 23:39:37,450 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:40:09] 2025-11-25 23:39:37,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:40:09] 2025-11-25 23:39:37,454 | INFO     | did not find any defunct processes belonging to 7237
[2025-11-26 00:40:09] 2025-11-25 23:39:37,457 | INFO     | did not find any defunct processes belonging to 7237
[2025-11-26 00:40:09] 2025-11-25 23:39:37,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:40:09] 2025-11-25 23:39:37,460 | INFO     | ready for new job
[2025-11-26 00:40:09] 2025-11-25 23:39:37,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:40:09] 2025-11-25 23:39:37,467 | INFO     | ***************************************
[2025-11-26 00:40:09] 2025-11-25 23:39:37,467 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:40:09] 2025-11-25 23:39:37,467 | INFO     | ***************************************
[2025-11-26 00:40:09] 2025-11-25 23:39:37,467 | INFO     | 
[2025-11-26 00:40:09] 2025-11-25 23:39:37,468 | INFO     | pilot is running in a VM
[2025-11-26 00:40:09] 2025-11-25 23:39:37,468 | INFO     | architecture information:
[2025-11-26 00:40:09] 2025-11-25 23:39:37,468 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:40:09] 2025-11-25 23:39:37,499 | INFO     | cat /etc/os-release:
[2025-11-26 00:40:09] NAME="CentOS Linux"
[2025-11-26 00:40:09] VERSION="7 (Core)"
[2025-11-26 00:40:09] ID="centos"
[2025-11-26 00:40:09] ID_LIKE="rhel fedora"
[2025-11-26 00:40:09] VERSION_ID="7"
[2025-11-26 00:40:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:40:09] ANSI_COLOR="0;31"
[2025-11-26 00:40:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:40:09] HOME_URL="https://www.centos.org/"
[2025-11-26 00:40:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:40:09] 
[2025-11-26 00:40:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:40:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:40:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:40:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:40:09] 
[2025-11-26 00:40:09] 2025-11-25 23:39:37,499 | INFO     | ***************************************
[2025-11-26 00:40:09] 2025-11-25 23:39:38,003 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-26 00:40:09] 2025-11-25 23:39:38,040 | INFO     | sufficient remaining disk space (494629027840 B)
[2025-11-26 00:40:09] 2025-11-25 23:39:38,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:40:09] 2025-11-25 23:39:38,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:40:09] 2025-11-25 23:39:38,041 | INFO     | update_server=False
[2025-11-26 00:40:09] 2025-11-25 23:39:38,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:40:09] 2025-11-25 23:39:38,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:40:09] 2025-11-25 23:39:38,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:40:09] 2025-11-25 23:39:38,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:40:09] 2025-11-25 23:39:38,077 | INFO     | all data control threads have been joined
[2025-11-26 00:40:09] 2025-11-25 23:39:38,176 | INFO     | all payload control threads have been joined
[2025-11-26 00:40:09] 2025-11-25 23:39:38,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:40:09] 2025-11-25 23:39:38,635 | INFO     | aborting loop
[2025-11-26 00:40:09] 2025-11-25 23:39:38,902 | INFO     | all job control threads have been joined
[2025-11-26 00:40:09] 2025-11-25 23:39:39,048 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,048 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,084 | INFO     | [data] control thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,181 | INFO     | [payload] control thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,498 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,640 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,657 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,724 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:39,908 | INFO     | [job] control thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,015 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,050 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,210 | INFO     | [job] validate thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,313 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:40,447 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:42,050 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:40:09] 2025-11-25 23:39:52,084 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:40:09] 2025-11-25 23:39:53,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917103200064)>', '<ExcThread(monitor, started 139916663052032)>']
[2025-11-26 00:40:09] 2025-11-25 23:39:58,115 | INFO     | all workflow threads have been joined
[2025-11-26 00:40:09] 2025-11-25 23:39:58,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:40:09] 2025-11-25 23:39:58,116 | INFO     | traces error code: 0
[2025-11-26 00:40:09] 2025-11-25 23:39:58,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:40:09] 2025-11-25 23:40:09,098 | INFO     | PID=727 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-26 00:40:09] 2025-11-25 23:40:09,099 | INFO     | .. there are 9 such processes running
[2025-11-26 00:40:09] 2025-11-25 23:40:09,099 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:40:09] 2025-11-25 23:40:09,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:40:09] 2025-11-25 23:40:09,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:40:09] 2025-11-25 23:40:09,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:40:09] 2025-11-25 23:40:09,100 | INFO     | [monitor] control thread has ended
[2025-11-26 00:40:09] 2025-11-25 23:40:09,341 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:40:09] 2025-11-25 23:40:09,350 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:40:09] 2025-11-25 23:40:09,353 [wrapper] pilotpid: 727
[2025-11-26 00:40:09] 2025-11-25 23:40:09,357 [wrapper] Pilot exit status: 0
[2025-11-26 00:40:09] 2025-11-25 23:40:09,404 [wrapper] pandaids: 6894290541
[2025-11-26 00:40:09] 2025-11-25 23:40:09,453 [wrapper] cleanup supervisor_pilot 13409 728
[2025-11-26 00:40:09] 2025-11-25 23:40:09,461 [wrapper] Test setup, not cleaning
[2025-11-26 00:40:09] 2025-11-25 23:40:09,511 [wrapper] apfmon messages muted
[2025-11-26 00:40:09] 2025-11-25 23:40:09,516 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:40:09] 2025-11-25 23:40:09,522 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:40:09]  *** Error codes and diagnostics ***
[2025-11-26 00:40:09]     "exeErrorCode": 0,
[2025-11-26 00:40:09]     "exeErrorDiag": "",
[2025-11-26 00:40:09]     "pilotErrorCode": 0,
[2025-11-26 00:40:09]     "pilotErrorDiag": "",
[2025-11-26 00:40:09]  *** Listing of results directory ***
[2025-11-26 00:40:09] total 1333548
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:46 queuedata.json
[2025-11-26 00:40:09] -rwx------. 1 boinc boinc     36292 Nov 21 12:46 runpilot2-wrapper.sh
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc       100 Nov 24 23:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:40:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 23:40 run_atlas
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc       105 Nov 24 23:40 job.xml
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc      6393 Nov 24 23:40 init_data.xml
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc 411021507 Nov 24 23:40 EVNT.47493127._002423.pool.root.1
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 23:40 start_atlas.sh
[2025-11-26 00:40:09] drwxrwx--x. 2 boinc boinc        68 Nov 24 23:40 shared
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc    590108 Nov 24 23:40 input.tar.gz
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc         0 Nov 24 23:40 boinc_lockfile
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc      2785 Nov 24 23:41 pandaJob.out
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc    991801 Nov 24 23:46 agis_schedconf.cvmfs.json
[2025-11-26 00:40:09] drwx------. 5 boinc boinc      4096 Nov 24 23:46 pilot3
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc       533 Nov 26 00:08 boinc_task_state.xml
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc 921568825 Nov 26 00:37 HITS.47533967._003949.pool.root.1
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc      1031 Nov 26 00:38 memory_monitor_summary.json
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc   1516240 Nov 26 00:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc   2552423 Nov 26 00:38 log.47533967._003949.job.log.tgz.1
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc        95 Nov 26 00:39 pilot_heartbeat.json
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc      7952 Nov 26 00:39 heartbeat.json
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc      8192 Nov 26 00:39 boinc_mmap_file
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc        29 Nov 26 00:39 wrapper_checkpoint.txt
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc       818 Nov 26 00:40 pilotlog.txt
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc  11974675 Nov 26 00:40 log.47533967._003949.job.log.1
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc       353 Nov 26 00:40 output.list
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc       620 Nov 26 00:40 runtime_log
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc  14551040 Nov 26 00:40 result.tar.gz
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc       662 Nov 26 00:40 T7zLDmvleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoNJKDm5ceyDo.diag
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc      8833 Nov 26 00:40 runtime_log.err
[2025-11-26 00:40:09] -rw-r--r--. 1 boinc boinc     21449 Nov 26 00:40 stderr.txt
[2025-11-26 00:40:09] HITS file was successfully produced:
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc 921568825 Nov 26 00:37 shared/HITS.pool.root.1
[2025-11-26 00:40:09]  *** Contents of shared directory: ***
[2025-11-26 00:40:09] total 1316172
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc 411021507 Nov 24 23:40 ATLAS.root_0
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 23:40 start_atlas.sh
[2025-11-26 00:40:09] -rw-r--r--. 2 boinc boinc    590108 Nov 24 23:40 input.tar.gz
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc 921568825 Nov 26 00:37 HITS.pool.root.1
[2025-11-26 00:40:09] -rw-------. 1 boinc boinc  14551040 Nov 26 00:40 result.tar.gz
00:40:11 (29385): run_atlas exited; CPU time 342195.874171
00:40:11 (29385): called boinc_finish(0)

</stderr_txt>
]]>

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