Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:30:39 (8283): wrapper (7.7.26015): starting
01:30:39 (8283): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:30:39] Arguments: --nthreads 8
[2025-11-22 01:30:39] Threads: 8
[2025-11-22 01:30:39] Checking for CVMFS
[2025-11-22 01:30:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:30:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:30:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:30:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:30:39] 2.11.2.0 8318 111632 137244 153162 2 89 11991985 18432000 1372 130560 0 78660801 99.972 4905215 31638 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 01:30:39] CVMFS is ok
[2025-11-22 01:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:30:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:30:39] Further information can be found at the LHC@home message board.
[2025-11-22 01:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:30:39] Checking for apptainer binary...
[2025-11-22 01:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:30:39] Running /usr/bin/apptainer --version
[2025-11-22 01:30:39] apptainer version 1.3.2-1.el7
[2025-11-22 01:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:30:40] c-206-28.aglt2.org
[2025-11-22 01:30:40] apptainer works
[2025-11-22 01:30:40] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:30:40] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:30:40] Starting ATLAS job with PandaID=6894265142
[2025-11-22 01:30:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:46:25 (24680): wrapper (7.7.26015): starting
13:46:25 (24680): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 13:46:25] Arguments: --nthreads 8
[2025-11-22 13:46:25] Threads: 8
[2025-11-22 13:46:25] This job has been restarted, cleaning up previous attempt
[2025-11-22 13:46:25] Checking for CVMFS
[2025-11-22 13:46:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:46:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:46:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:46:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:46:26] 2.11.2.0 8318 112368 128020 153181 3 56 12075378 18432001 1 130560 0 79303560 99.972 4930174 31660 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 13:46:26] CVMFS is ok
[2025-11-22 13:46:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:46:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:46:26] Further information can be found at the LHC@home message board.
[2025-11-22 13:46:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:46:26] Checking for apptainer binary...
[2025-11-22 13:46:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:46:26] Running /usr/bin/apptainer --version
[2025-11-22 13:46:26] apptainer version 1.3.2-1.el7
[2025-11-22 13:46:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:46:27] c-206-28.aglt2.org
[2025-11-22 13:46:27] apptainer works
[2025-11-22 13:46:27] Set ATHENA_PROC_NUMBER=8
[2025-11-22 13:46:27] Set ATHENA_CORE_NUMBER=8
[2025-11-22 13:46:27] Starting ATLAS job with PandaID=6894265142
[2025-11-22 13:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:19:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:19:54] 2025-11-23 14:19:20,203 | INFO     | monitor loop #5017: job 0:6894265142 is in state 'finished'
[2025-11-23 09:19:54] 2025-11-23 14:19:20,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,560 | INFO     | time since job start (70360s) is within the limit (172800.0s)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,694 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 09:19:54] 2025-11-23 14:19:20,700 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2039.7083333333333
[2025-11-23 09:19:54] 2025-11-23 14:19:20,703 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894265142/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,704 | INFO     | extracted standard info from prmon json
[2025-11-23 09:19:54] 2025-11-23 14:19:20,704 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:19:54] 2025-11-23 14:19:20,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:19:54] 2025-11-23 14:19:20,721 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:19:54] 2025-11-23 14:19:20,722 | INFO     | sum of square deviations: 475298583090.30914
[2025-11-23 09:19:54] 2025-11-23 14:19:20,752 | INFO     | sum of deviations: 2540148912636.267
[2025-11-23 09:19:54] 2025-11-23 14:19:20,752 | INFO     | mean x: 1763872363.8031223
[2025-11-23 09:19:54] 2025-11-23 14:19:20,753 | INFO     | mean y: 2867742.5915004336
[2025-11-23 09:19:54] 2025-11-23 14:19:20,753 | INFO     | intersect: -9423835021.410522
[2025-11-23 09:19:54] 2025-11-23 14:19:20,754 | INFO     | chi2: 4.407949378596655
[2025-11-23 09:19:54] 2025-11-23 14:19:20,755 | INFO     | sum of square deviations: 469142229152.06976
[2025-11-23 09:19:54] 2025-11-23 14:19:20,781 | INFO     | sum of deviations: 2819743501263.9277
[2025-11-23 09:19:54] 2025-11-23 14:19:20,781 | INFO     | mean x: 1763872211.3066201
[2025-11-23 09:19:54] 2025-11-23 14:19:20,781 | INFO     | mean y: 2874661.193379791
[2025-11-23 09:19:54] 2025-11-23 14:19:20,781 | INFO     | intersect: -10598744412.581558
[2025-11-23 09:19:54] 2025-11-23 14:19:20,782 | INFO     | chi2: 2.3405522784995423
[2025-11-23 09:19:54] 2025-11-23 14:19:20,782 | INFO     | current chi2=2.3405522784995423 (change=46.90156175875376 %)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,783 | INFO     | sum of square deviations: 463039271563.8024
[2025-11-23 09:19:54] 2025-11-23 14:19:20,808 | INFO     | sum of deviations: 2801267399601.3916
[2025-11-23 09:19:54] 2025-11-23 14:19:20,809 | INFO     | mean x: 1763872058.8101487
[2025-11-23 09:19:54] 2025-11-23 14:19:20,809 | INFO     | mean y: 2874198.983377078
[2025-11-23 09:19:54] 2025-11-23 14:19:20,809 | INFO     | intersect: -10668093899.954262
[2025-11-23 09:19:54] 2025-11-23 14:19:20,810 | INFO     | chi2: 2.3325960993870147
[2025-11-23 09:19:54] 2025-11-23 14:19:20,810 | INFO     | current chi2=2.3325960993870147 (change=0.3399274259162465 %)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,810 | INFO     | right removable region: 1142
[2025-11-23 09:19:54] 2025-11-23 14:19:20,811 | INFO     | sum of square deviations: 469141664292.06995
[2025-11-23 09:19:54] 2025-11-23 14:19:20,837 | INFO     | sum of deviations: 2258173314251.302
[2025-11-23 09:19:54] 2025-11-23 14:19:20,837 | INFO     | mean x: 1763872516.3066201
[2025-11-23 09:19:54] 2025-11-23 14:19:20,837 | INFO     | mean y: 2874717.618466899
[2025-11-23 09:19:54] 2025-11-23 14:19:20,837 | INFO     | intersect: -8487374921.742399
[2025-11-23 09:19:54] 2025-11-23 14:19:20,838 | INFO     | chi2: 2.4527528916502015
[2025-11-23 09:19:54] 2025-11-23 14:19:20,838 | INFO     | current chi2=2.4527528916502015 (change=44.35614656647721 %)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,839 | INFO     | sum of square deviations: 463038281901.03876
[2025-11-23 09:19:54] 2025-11-23 14:19:20,864 | INFO     | sum of deviations: 2165477633343.5103
[2025-11-23 09:19:54] 2025-11-23 14:19:20,865 | INFO     | mean x: 1763872668.808399
[2025-11-23 09:19:54] 2025-11-23 14:19:20,865 | INFO     | mean y: 2877033.4680664917
[2025-11-23 09:19:54] 2025-11-23 14:19:20,865 | INFO     | intersect: -8246174852.023444
[2025-11-23 09:19:54] 2025-11-23 14:19:20,866 | INFO     | chi2: 2.3673370157379092
[2025-11-23 09:19:54] 2025-11-23 14:19:20,866 | INFO     | current chi2=2.3673370157379092 (change=3.4824493002564494 %)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,866 | INFO     | left removable region: 20
[2025-11-23 09:19:54] 2025-11-23 14:19:20,867 | INFO     | sum of square deviations: 437983053411.0447
[2025-11-23 09:19:54] 2025-11-23 14:19:20,891 | INFO     | sum of deviations: 2285198670002.4272
[2025-11-23 09:19:54] 2025-11-23 14:19:20,891 | INFO     | mean x: 1763872638.3172905
[2025-11-23 09:19:54] 2025-11-23 14:19:20,891 | INFO     | mean y: 2887075.3386809267
[2025-11-23 09:19:54] 2025-11-23 14:19:20,892 | INFO     | intersect: -9200207372.595272
[2025-11-23 09:19:54] 2025-11-23 14:19:20,893 | INFO     | chi2: 0.21835500908527078
[2025-11-23 09:19:54] 2025-11-23 14:19:20,893 | INFO     | current memory leak: 5.22 B/s (using 1122 data points, chi2=0.22)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,893 | INFO     | could have reported an average CPU frequency of 2563 MHz (42 samples)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | ..............................
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . Timing measurements:
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . get job = 0 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . initial setup = 2 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . payload setup = 6 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . stage-in = 0 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . payload execution = 70320 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,894 | INFO     | . stage-out = 3 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,895 | INFO     | . log creation = 0 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,895 | INFO     | ..............................
[2025-11-23 09:19:54] 2025-11-23 14:19:20,976 | INFO     | 
[2025-11-23 09:19:54] 2025-11-23 14:19:20,976 | INFO     | job summary report
[2025-11-23 09:19:54] 2025-11-23 14:19:20,976 | INFO     | --------------------------------------------------
[2025-11-23 09:19:54] 2025-11-23 14:19:20,976 | INFO     | PanDA job id: 6894265142
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | task id: 47533967
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | errors: (none)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | pilot state: finished 
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | transexitcode: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | exeerrorcode: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | exeerrordiag: 
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | exitcode: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:20,977 | INFO     | exitmsg: OK
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | cpuconsumptiontime: 541196 s
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | nevents: 1000
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | neventsw: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | pid: 23869
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | pgrp: 23869
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | corecount: 8
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | event service: False
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | sizes: {0: 2298756, 5: 2299018, 11: 2299074, 70330: 2355672, 70335: 2364666, 70338: 2364722, 70345: 2365096}
[2025-11-23 09:19:54] 2025-11-23 14:19:20,978 | INFO     | --------------------------------------------------
[2025-11-23 09:19:54] 2025-11-23 14:19:20,979 | INFO     | 
[2025-11-23 09:19:54] 2025-11-23 14:19:20,979 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 09:19:54] 2025-11-23 14:19:20,996 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,996 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,996 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,996 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:19:54] 2025-11-23 14:19:20,998 | INFO     | job 6894265142 has completed (purged errors)
[2025-11-23 09:19:54] 2025-11-23 14:19:20,999 | INFO     | overall cleanup function is called
[2025-11-23 09:19:54] 2025-11-23 14:19:22,010 | INFO     | --- collectZombieJob: --- 10, [23869]
[2025-11-23 09:19:54] 2025-11-23 14:19:22,011 | INFO     | zombie collector waiting for pid 23869
[2025-11-23 09:19:54] 2025-11-23 14:19:22,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:19:54] 2025-11-23 14:19:22,011 | INFO     | collected zombie processes
[2025-11-23 09:19:54] 2025-11-23 14:19:22,011 | INFO     | will attempt to kill all subprocesses of pid=23869
[2025-11-23 09:19:54] 2025-11-23 14:19:22,140 | INFO     | process IDs to be killed: [23869] (in reverse order)
[2025-11-23 09:19:54] 2025-11-23 14:19:22,186 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:19:54] 2025-11-23 14:19:22,186 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:19:54] 2025-11-23 14:19:22,189 | INFO     | did not find any defunct processes belonging to 23869
[2025-11-23 09:19:54] 2025-11-23 14:19:22,192 | INFO     | did not find any defunct processes belonging to 23869
[2025-11-23 09:19:54] 2025-11-23 14:19:22,193 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:19:54] 2025-11-23 14:19:22,193 | INFO     | ready for new job
[2025-11-23 09:19:54] 2025-11-23 14:19:22,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:19:54] 2025-11-23 14:19:22,197 | INFO     | ***************************************
[2025-11-23 09:19:54] 2025-11-23 14:19:22,197 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:19:54] 2025-11-23 14:19:22,197 | INFO     | ***************************************
[2025-11-23 09:19:54] 2025-11-23 14:19:22,197 | INFO     | 
[2025-11-23 09:19:54] 2025-11-23 14:19:22,198 | INFO     | architecture information:
[2025-11-23 09:19:54] 2025-11-23 14:19:22,198 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:19:54] 2025-11-23 14:19:22,211 | INFO     | cat /etc/os-release:
[2025-11-23 09:19:54] NAME="CentOS Linux"
[2025-11-23 09:19:54] VERSION="7 (Core)"
[2025-11-23 09:19:54] ID="centos"
[2025-11-23 09:19:54] ID_LIKE="rhel fedora"
[2025-11-23 09:19:54] VERSION_ID="7"
[2025-11-23 09:19:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:19:54] ANSI_COLOR="0;31"
[2025-11-23 09:19:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:19:54] HOME_URL="https://www.centos.org/"
[2025-11-23 09:19:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:19:54] 
[2025-11-23 09:19:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:19:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:19:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:19:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:19:54] 
[2025-11-23 09:19:54] 2025-11-23 14:19:22,211 | INFO     | ***************************************
[2025-11-23 09:19:54] 2025-11-23 14:19:22,714 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 09:19:54] 2025-11-23 14:19:22,729 | INFO     | sufficient remaining disk space (24152899584 B)
[2025-11-23 09:19:54] 2025-11-23 14:19:22,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:19:54] 2025-11-23 14:19:22,729 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:19:54] 2025-11-23 14:19:22,730 | INFO     | update_server=False
[2025-11-23 09:19:54] 2025-11-23 14:19:22,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:19:54] 2025-11-23 14:19:22,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:19:54] 2025-11-23 14:19:23,134 | INFO     | all data control threads have been joined
[2025-11-23 09:19:54] 2025-11-23 14:19:23,679 | INFO     | all payload control threads have been joined
[2025-11-23 09:19:54] 2025-11-23 14:19:23,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:19:54] 2025-11-23 14:19:23,712 | INFO     | aborting loop
[2025-11-23 09:19:54] 2025-11-23 14:19:23,734 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:23,735 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:23,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:19:54] 2025-11-23 14:19:23,995 | INFO     | all job control threads have been joined
[2025-11-23 09:19:54] 2025-11-23 14:19:24,034 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,140 | INFO     | [data] control thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,247 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,294 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:19:54] 2025-11-23 14:19:24,684 | INFO     | [payload] control thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,717 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,786 | INFO     | [job] validate thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,790 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,800 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:24,877 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:25,001 | INFO     | [job] control thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:25,021 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:25,875 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:28,423 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:19:54] 2025-11-23 14:19:36,795 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:19:54] 2025-11-23 14:19:38,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780694452032)>', '<ExcThread(monitor, started 139779442210560)>']
[2025-11-23 09:19:54] 2025-11-23 14:19:43,619 | INFO     | all workflow threads have been joined
[2025-11-23 09:19:54] 2025-11-23 14:19:43,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:19:54] 2025-11-23 14:19:43,621 | INFO     | traces error code: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:43,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:19:54] 2025-11-23 14:19:53,821 | INFO     | PID=3536 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 09:19:54] 2025-11-23 14:19:53,821 | INFO     | .. there are 3 such processes running
[2025-11-23 09:19:54] 2025-11-23 14:19:53,822 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:19:54] 2025-11-23 14:19:53,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:19:54] 2025-11-23 14:19:53,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:19:54] 2025-11-23 14:19:53,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:19:54] 2025-11-23 14:19:53,823 | INFO     | [monitor] control thread has ended
[2025-11-23 09:19:54] 2025-11-23 14:19:53,917 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:19:54] 2025-11-23 14:19:53,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:19:54] 2025-11-23 14:19:53,923 [wrapper] pilotpid: 3536
[2025-11-23 09:19:54] 2025-11-23 14:19:53,926 [wrapper] Pilot exit status: 0
[2025-11-23 09:19:54] 2025-11-23 14:19:53,935 [wrapper] pandaids: 6894265142 6894265142
[2025-11-23 09:19:54] 2025-11-23 14:19:53,963 [wrapper] cleanup supervisor_pilot  1203 3537
[2025-11-23 09:19:54] 2025-11-23 14:19:53,966 [wrapper] Test setup, not cleaning
[2025-11-23 09:19:54] 2025-11-23 14:19:53,968 [wrapper] apfmon messages muted
[2025-11-23 09:19:54] 2025-11-23 14:19:53,970 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:19:54] 2025-11-23 14:19:53,972 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:19:54]  *** Error codes and diagnostics ***
[2025-11-23 09:19:54]     "exeErrorCode": 0,
[2025-11-23 09:19:54]     "exeErrorDiag": "",
[2025-11-23 09:19:54]     "pilotErrorCode": 0,
[2025-11-23 09:19:54]     "pilotErrorDiag": "",
[2025-11-23 09:19:54]  *** Listing of results directory ***
[2025-11-23 09:19:54] total 1718448
[2025-11-23 09:19:54] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 23:55 queuedata.json
[2025-11-23 09:19:54] -rwx------ 1 boincer umatlas     36292 Nov 20 23:56 runpilot2-wrapper.sh
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 23:56 pilot3.tar.gz
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas       100 Nov 22 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:19:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 01:30 run_atlas
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas       105 Nov 22 01:30 job.xml
[2025-11-23 09:19:54] -rw-r--r-- 3 boincer umatlas 407995231 Nov 22 01:30 EVNT.47493127._002207.pool.root.1
[2025-11-23 09:19:54] -rw-r--r-- 3 boincer umatlas 407995231 Nov 22 01:30 ATLAS.root_0
[2025-11-23 09:19:54] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 01:30 input.tar.gz
[2025-11-23 09:19:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:30 start_atlas.sh
[2025-11-23 09:19:54] drwxrwx--x 2 boincer umatlas      4096 Nov 22 01:30 shared
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas         0 Nov 22 01:30 boinc_lockfile
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 13:46 pandaJob.out
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas        57 Nov 22 13:46 setup.sh.local
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas    989784 Nov 22 13:46 agis_schedconf.cvmfs.json
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 09:09 init_data.xml
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas       534 Nov 23 09:13 boinc_task_state.xml
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas 915662882 Nov 23 09:18 HITS.47533967._001782.pool.root.1
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas      1066 Nov 23 09:19 memory_monitor_summary.json
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas   1526164 Nov 23 09:19 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas   2317239 Nov 23 09:19 log.47533967._001782.job.log.tgz.1
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas      8662 Nov 23 09:19 heartbeat.json
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 09:19 boinc_mmap_file
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas        30 Nov 23 09:19 wrapper_checkpoint.txt
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas        96 Nov 23 09:19 pilot_heartbeat.json
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas       819 Nov 23 09:19 pilotlog.txt
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas   9734335 Nov 23 09:19 log.47533967._001782.job.log.1
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas       353 Nov 23 09:19 output.list
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas       620 Nov 23 09:19 runtime_log
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas  12072960 Nov 23 09:19 result.tar.gz
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas      9428 Nov 23 09:19 runtime_log.err
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas       793 Nov 23 09:19 p0lNDmUNYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmW3IKDm0WEN3m.diag
[2025-11-23 09:19:54] -rw-r--r-- 1 boincer umatlas     23455 Nov 23 09:19 stderr.txt
[2025-11-23 09:19:54] HITS file was successfully produced:
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas 915662882 Nov 23 09:18 shared/HITS.pool.root.1
[2025-11-23 09:19:54]  *** Contents of shared directory: ***
[2025-11-23 09:19:54] total 1305036
[2025-11-23 09:19:54] -rw-r--r-- 3 boincer umatlas 407995231 Nov 22 01:30 ATLAS.root_0
[2025-11-23 09:19:54] -rw-r--r-- 2 boincer umatlas    590098 Nov 22 01:30 input.tar.gz
[2025-11-23 09:19:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:30 start_atlas.sh
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas 915662882 Nov 23 09:18 HITS.pool.root.1
[2025-11-23 09:19:54] -rw------- 1 boincer umatlas  12072960 Nov 23 09:19 result.tar.gz
09:19:55 (24680): run_atlas exited; CPU time 539463.618114
09:19:55 (24680): called boinc_finish(0)

</stderr_txt>
]]>

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