Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:24:12 (675): wrapper (7.7.26015): starting
01:24:12 (675): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:24:12] Arguments: --nthreads 8
[2025-11-25 01:24:12] Threads: 8
[2025-11-25 01:24:12] Checking for CVMFS
[2025-11-25 01:24:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:24:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:24:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:24:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:24:15] 2.11.2.0 30898 283032 136608 153264 2 84 14469043 25165824 1027 130560 12 127849139 99.874 79117920 3037 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:24:15] CVMFS is ok
[2025-11-25 01:24:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:24:15] Checking for apptainer binary...
[2025-11-25 01:24:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:24:15] Running /usr/bin/apptainer --version
[2025-11-25 01:24:15] apptainer version 1.3.2-1.el7
[2025-11-25 01:24:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:24:26] cg-vwn285.simple-grid.lan
[2025-11-25 01:24:26] apptainer works
[2025-11-25 01:24:26] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:24:26] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:24:26] Starting ATLAS job with PandaID=6893872775
[2025-11-25 01:24:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:47:32]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:47:32] 2025-11-26 00:46:08,694 | INFO     | time since job start (87439s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:09,525 | INFO     | monitor loop #5843: job 0:6893872775 is in state 'finished'
[2025-11-26 01:47:32] 2025-11-26 00:46:09,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:32] 2025-11-26 00:46:10,701 | INFO     | time since job start (87441s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:12,030 | INFO     | monitor loop #5844: job 0:6893872775 is in state 'finished'
[2025-11-26 01:47:32] 2025-11-26 00:46:12,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:32] 2025-11-26 00:46:12,707 | INFO     | time since job start (87443s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:14,534 | INFO     | monitor loop #5845: job 0:6893872775 is in state 'finished'
[2025-11-26 01:47:32] 2025-11-26 00:46:14,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:32] 2025-11-26 00:46:14,719 | INFO     | time since job start (87445s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:16,726 | INFO     | time since job start (87447s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:17,037 | INFO     | monitor loop #5846: job 0:6893872775 is in state 'finished'
[2025-11-26 01:47:32] 2025-11-26 00:46:17,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:32] 2025-11-26 00:46:18,736 | INFO     | time since job start (87449s) is within the limit (172800.0s)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,540 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 01:47:32] 2025-11-26 00:46:19,541 | INFO     | monitor loop #5847: job 0:6893872775 is in state 'finished'
[2025-11-26 01:47:32] 2025-11-26 00:46:19,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,542 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 01:47:32] 2025-11-26 00:46:19,544 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893872775/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,545 | INFO     | extracted standard info from prmon json
[2025-11-26 01:47:32] 2025-11-26 00:46:19,545 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:47:32] 2025-11-26 00:46:19,545 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:47:32] 2025-11-26 00:46:19,573 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:47:32] 2025-11-26 00:46:19,576 | INFO     | sum of square deviations: 897273149947.7653
[2025-11-26 01:47:32] 2025-11-26 00:46:19,636 | INFO     | sum of deviations: 4119313070434.989
[2025-11-26 01:47:32] 2025-11-26 00:46:19,636 | INFO     | mean x: 1764074522.1950877
[2025-11-26 01:47:32] 2025-11-26 00:46:19,636 | INFO     | mean y: 2844634.3705263156
[2025-11-26 01:47:32] 2025-11-26 00:46:19,637 | INFO     | intersect: -8095887883.060334
[2025-11-26 01:47:32] 2025-11-26 00:46:19,638 | INFO     | chi2: 23.202843846549353
[2025-11-26 01:47:32] 2025-11-26 00:46:19,641 | INFO     | sum of square deviations: 887861827770.5995
[2025-11-26 01:47:32] 2025-11-26 00:46:19,702 | INFO     | sum of deviations: 4591081276462.369
[2025-11-26 01:47:32] 2025-11-26 00:46:19,702 | INFO     | mean x: 1764074369.6992958
[2025-11-26 01:47:32] 2025-11-26 00:46:19,702 | INFO     | mean y: 2852277.8767605633
[2025-11-26 01:47:32] 2025-11-26 00:46:19,702 | INFO     | intersect: -9119072503.313591
[2025-11-26 01:47:32] 2025-11-26 00:46:19,704 | INFO     | chi2: 20.061229487556847
[2025-11-26 01:47:32] 2025-11-26 00:46:19,704 | INFO     | current chi2=20.061229487556847 (change=13.539781501652934 %)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,704 | INFO     | right removable region: 1419
[2025-11-26 01:47:32] 2025-11-26 00:46:19,707 | INFO     | sum of square deviations: 887860788940.5994
[2025-11-26 01:47:32] 2025-11-26 00:46:19,768 | INFO     | sum of deviations: 3509659046152.433
[2025-11-26 01:47:32] 2025-11-26 00:46:19,769 | INFO     | mean x: 1764074674.6992958
[2025-11-26 01:47:32] 2025-11-26 00:46:19,769 | INFO     | mean y: 2854512.033802817
[2025-11-26 01:47:32] 2025-11-26 00:46:19,769 | INFO     | intersect: -6970424088.921523
[2025-11-26 01:47:32] 2025-11-26 00:46:19,771 | INFO     | chi2: 18.213656812088338
[2025-11-26 01:47:32] 2025-11-26 00:46:19,771 | INFO     | current chi2=18.213656812088338 (change=21.502480762516484 %)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,771 | INFO     | left removable region: 10
[2025-11-26 01:47:32] 2025-11-26 00:46:19,773 | INFO     | sum of square deviations: 867387001952.6534
[2025-11-26 01:47:32] 2025-11-26 00:46:19,831 | INFO     | sum of deviations: 3533206395463.206
[2025-11-26 01:47:32] 2025-11-26 00:46:19,831 | INFO     | mean x: 1764074644.2086587
[2025-11-26 01:47:32] 2025-11-26 00:46:19,831 | INFO     | mean y: 2872522.4414478354
[2025-11-26 01:47:32] 2025-11-26 00:46:19,832 | INFO     | intersect: -7182893232.592006
[2025-11-26 01:47:32] 2025-11-26 00:46:19,833 | INFO     | chi2: 10.691631458133589
[2025-11-26 01:47:32] 2025-11-26 00:46:19,834 | INFO     | current memory leak: 4.07 B/s (using 1409 data points, chi2=10.69)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | ..............................
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . Timing measurements:
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . get job = 0 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . initial setup = 5 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . payload setup = 187 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . stage-in = 0 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . payload execution = 87020 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,836 | INFO     | . stage-out = 4 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,837 | INFO     | . log creation = 1 s
[2025-11-26 01:47:32] 2025-11-26 00:46:19,837 | INFO     | ..............................
[2025-11-26 01:47:32] 2025-11-26 00:46:20,405 | INFO     | 
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | job summary report
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | --------------------------------------------------
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | PanDA job id: 6893872775
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | task id: 47523449
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | errors: (none)
[2025-11-26 01:47:32] 2025-11-26 00:46:20,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | pilot state: finished 
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | transexitcode: 0
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | exeerrorcode: 0
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | exeerrordiag: 
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | exitcode: 0
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | exitmsg: OK
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | cpuconsumptiontime: 336520 s
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | nevents: 1000
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | neventsw: 0
[2025-11-26 01:47:32] 2025-11-26 00:46:20,407 | INFO     | pid: 10902
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | pgrp: 10902
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | corecount: 8
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | event service: False
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | sizes: {0: 2284083, 1: 2284338, 2: 2284338, 12: 2284366, 23: 2284394, 34: 2284422, 45: 2284578, 56: 2284606, 66: 2284634, 77: 2284662, 88: 2284718, 99: 2285026, 11
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | --------------------------------------------------
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | 
[2025-11-26 01:47:32] 2025-11-26 00:46:20,408 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-26 01:47:32] 2025-11-26 00:46:20,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,442 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:47:32] 2025-11-26 00:46:20,445 | INFO     | job 6893872775 has completed (purged errors)
[2025-11-26 01:47:32] 2025-11-26 00:46:20,445 | INFO     | overall cleanup function is called
[2025-11-26 01:47:32] 2025-11-26 00:46:21,467 | INFO     | --- collectZombieJob: --- 10, [10902]
[2025-11-26 01:47:32] 2025-11-26 00:46:21,468 | INFO     | zombie collector waiting for pid 10902
[2025-11-26 01:47:32] 2025-11-26 00:46:21,468 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:47:32] 2025-11-26 00:46:21,468 | INFO     | collected zombie processes
[2025-11-26 01:47:32] 2025-11-26 00:46:21,468 | INFO     | will attempt to kill all subprocesses of pid=10902
[2025-11-26 01:47:32] 2025-11-26 00:46:21,587 | INFO     | process IDs to be killed: [10902] (in reverse order)
[2025-11-26 01:47:32] 2025-11-26 00:46:21,677 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:47:32] 2025-11-26 00:46:21,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:47:32] 2025-11-26 00:46:21,681 | INFO     | did not find any defunct processes belonging to 10902
[2025-11-26 01:47:32] 2025-11-26 00:46:21,685 | INFO     | did not find any defunct processes belonging to 10902
[2025-11-26 01:47:32] 2025-11-26 00:46:21,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:47:32] 2025-11-26 00:46:21,687 | INFO     | ready for new job
[2025-11-26 01:47:32] 2025-11-26 00:46:21,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:47:32] 2025-11-26 00:46:21,694 | INFO     | ***************************************
[2025-11-26 01:47:32] 2025-11-26 00:46:21,695 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:47:32] 2025-11-26 00:46:21,695 | INFO     | ***************************************
[2025-11-26 01:47:32] 2025-11-26 00:46:21,695 | INFO     | 
[2025-11-26 01:47:32] 2025-11-26 00:46:21,696 | INFO     | pilot is running in a VM
[2025-11-26 01:47:32] 2025-11-26 00:46:21,696 | INFO     | architecture information:
[2025-11-26 01:47:32] 2025-11-26 00:46:21,697 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:47:32] 2025-11-26 00:46:21,737 | INFO     | cat /etc/os-release:
[2025-11-26 01:47:32] NAME="CentOS Linux"
[2025-11-26 01:47:32] VERSION="7 (Core)"
[2025-11-26 01:47:32] ID="centos"
[2025-11-26 01:47:32] ID_LIKE="rhel fedora"
[2025-11-26 01:47:32] VERSION_ID="7"
[2025-11-26 01:47:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:47:32] ANSI_COLOR="0;31"
[2025-11-26 01:47:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:47:32] HOME_URL="https://www.centos.org/"
[2025-11-26 01:47:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:47:32] 
[2025-11-26 01:47:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:47:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:47:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:47:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:47:32] 
[2025-11-26 01:47:32] 2025-11-26 00:46:21,737 | INFO     | ***************************************
[2025-11-26 01:47:32] 2025-11-26 00:46:22,241 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-26 01:47:32] 2025-11-26 00:46:22,271 | INFO     | sufficient remaining disk space (494871248896 B)
[2025-11-26 01:47:32] 2025-11-26 00:46:22,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:47:32] 2025-11-26 00:46:22,272 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:47:32] 2025-11-26 00:46:22,272 | INFO     | update_server=False
[2025-11-26 01:47:32] 2025-11-26 00:46:22,272 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:47:32] 2025-11-26 00:46:22,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:47:32] 2025-11-26 00:46:22,353 | INFO     | all payload control threads have been joined
[2025-11-26 01:47:32] 2025-11-26 00:46:22,542 | INFO     | all data control threads have been joined
[2025-11-26 01:47:32] 2025-11-26 00:46:22,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:47:32] 2025-11-26 00:46:23,057 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:47:32] 2025-11-26 00:46:23,058 | INFO     | aborting loop
[2025-11-26 01:47:32] 2025-11-26 00:46:23,144 | INFO     | all job control threads have been joined
[2025-11-26 01:47:32] 2025-11-26 00:46:23,277 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,358 | INFO     | [payload] control thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,548 | INFO     | [data] control thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,600 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,601 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,774 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:23,975 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,063 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,149 | INFO     | [job] control thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,481 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,598 | INFO     | [job] validate thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,804 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,896 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:24,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:47:32] 2025-11-26 00:46:25,980 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:26,275 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:47:32] 2025-11-26 00:46:52,073 | INFO     | PID=4418 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 01:47:32] 2025-11-26 00:46:52,073 | INFO     | .. there are 9 such processes running
[2025-11-26 01:47:32] 2025-11-26 00:46:52,073 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:47:32] 2025-11-26 00:46:52,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:47:32] 2025-11-26 00:46:52,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:47:32] 2025-11-26 00:47:21,712 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:47:32] 2025-11-26 00:47:22,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697102673728)>', '<ExcThread(monitor, started 139696655017728)>']
[2025-11-26 01:47:32] 2025-11-26 00:47:23,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:47:32] 2025-11-26 00:47:23,258 | INFO     | [monitor] control thread has ended
[2025-11-26 01:47:32] 2025-11-26 00:47:27,847 | INFO     | all workflow threads have been joined
[2025-11-26 01:47:32] 2025-11-26 00:47:27,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:47:32] 2025-11-26 00:47:27,848 | INFO     | traces error code: 0
[2025-11-26 01:47:32] 2025-11-26 00:47:27,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:47:32] 2025-11-26 00:47:28,138 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:47:32] 2025-11-26 00:47:28,151 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:47:32] 2025-11-26 00:47:28,192 [wrapper] pilotpid: 4418
[2025-11-26 01:47:32] 2025-11-26 00:47:28,259 [wrapper] Pilot exit status: 0
[2025-11-26 01:47:32] 2025-11-26 00:47:28,568 [wrapper] pandaids: 6893872775
[2025-11-26 01:47:32] 2025-11-26 00:47:29,375 [wrapper] cleanup supervisor_pilot 11923 4419
[2025-11-26 01:47:32] 2025-11-26 00:47:29,455 [wrapper] Test setup, not cleaning
[2025-11-26 01:47:32] 2025-11-26 00:47:29,533 [wrapper] apfmon messages muted
[2025-11-26 01:47:32] 2025-11-26 00:47:29,600 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:47:32] 2025-11-26 00:47:29,660 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:47:32]  *** Error codes and diagnostics ***
[2025-11-26 01:47:32]     "exeErrorCode": 0,
[2025-11-26 01:47:32]     "exeErrorDiag": "",
[2025-11-26 01:47:32]     "pilotErrorCode": 0,
[2025-11-26 01:47:32]     "pilotErrorDiag": "",
[2025-11-26 01:47:32]  *** Listing of results directory ***
[2025-11-26 01:47:32] total 1335516
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc    576529 Nov 20 16:07 pilot3.tar.gz
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc      5112 Nov 20 16:20 queuedata.json
[2025-11-26 01:47:32] -rwx------. 1 boinc boinc     36292 Nov 20 16:22 runpilot2-wrapper.sh
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:47:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:24 run_atlas
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:24 job.xml
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc      6391 Nov 25 01:24 init_data.xml
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc 410291975 Nov 25 01:24 EVNT.47493127._000683.pool.root.1
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:24 start_atlas.sh
[2025-11-26 01:47:32] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:24 shared
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc    590097 Nov 25 01:24 input.tar.gz
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:24 boinc_lockfile
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:24 pandaJob.out
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc    991801 Nov 25 01:28 agis_schedconf.cvmfs.json
[2025-11-26 01:47:32] drwx------. 5 boinc boinc      4096 Nov 25 01:28 pilot3
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:28 boinc_task_state.xml
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc 925029651 Nov 26 01:45 HITS.47523449._006825.pool.root.1
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc      1033 Nov 26 01:45 memory_monitor_summary.json
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc   1516240 Nov 26 01:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc        95 Nov 26 01:46 pilot_heartbeat.json
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc   2517548 Nov 26 01:46 log.47523449._006825.job.log.tgz.1
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc      8627 Nov 26 01:46 heartbeat.json
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc      8192 Nov 26 01:47 boinc_mmap_file
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc        29 Nov 26 01:47 wrapper_checkpoint.txt
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc      4884 Nov 26 01:47 pilotlog.txt
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc  11652592 Nov 26 01:47 log.47523449._006825.job.log.1
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc       353 Nov 26 01:47 output.list
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc       620 Nov 26 01:47 runtime_log
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc  14192640 Nov 26 01:47 result.tar.gz
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc      8833 Nov 26 01:47 runtime_log.err
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc       662 Nov 26 01:47 naKODmhfLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7CIKDmvorgvm.diag
[2025-11-26 01:47:32] -rw-r--r--. 1 boinc boinc     21383 Nov 26 01:47 stderr.txt
[2025-11-26 01:47:32] HITS file was successfully produced:
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc 925029651 Nov 26 01:45 shared/HITS.pool.root.1
[2025-11-26 01:47:32]  *** Contents of shared directory: ***
[2025-11-26 01:47:32] total 1318484
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc 410291975 Nov 25 01:24 ATLAS.root_0
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:24 start_atlas.sh
[2025-11-26 01:47:32] -rw-r--r--. 2 boinc boinc    590097 Nov 25 01:24 input.tar.gz
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc 925029651 Nov 26 01:45 HITS.pool.root.1
[2025-11-26 01:47:32] -rw-------. 1 boinc boinc  14192640 Nov 26 01:47 result.tar.gz
01:47:34 (675): run_atlas exited; CPU time 336964.634119
01:47:34 (675): called boinc_finish(0)

</stderr_txt>
]]>

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