Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:51:08 (6923): wrapper (7.7.26015): starting
17:51:08 (6923): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 17:51:08] Arguments: --nthreads 12
[2025-11-22 17:51:08] Threads: 12
[2025-11-22 17:51:08] Checking for CVMFS
[2025-11-22 17:51:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 17:51:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 17:51:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 17:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 17:51:18] 2.13.3.0 5957 1463 104996 153180 0 89 4726982 102400001 1713 130560 29 5127650 99.995 60652 10 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 17:51:18] CVMFS is ok
[2025-11-22 17:51:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 17:51:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 17:51:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 17:51:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 17:51:18] Further information can be found at the LHC@home message board.
[2025-11-22 17:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 17:51:18] Checking for apptainer binary...
[2025-11-22 17:51:18] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 17:51:18] apptainer is not installed, using version from CVMFS
[2025-11-22 17:51:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 17:51:19] crocidura-russula
[2025-11-22 17:51:19] apptainer works
[2025-11-22 17:51:19] Set ATHENA_PROC_NUMBER=12
[2025-11-22 17:51:19] Set ATHENA_CORE_NUMBER=12
[2025-11-22 17:51:19] Starting ATLAS job with PandaID=6894290855
[2025-11-22 17:51:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 21:28:28]  *** The last 200 lines of the pilot log: ***
[2025-11-22 21:28:28] 2025-11-22 21:27:51,194 | INFO     | time since job start (12972s) is within the limit (172800.0s)
[2025-11-22 21:28:28] 2025-11-22 21:27:53,200 | INFO     | time since job start (12974s) is within the limit (172800.0s)
[2025-11-22 21:28:28] 2025-11-22 21:27:53,612 | INFO     | monitor loop #951: job 0:6894290855 is in state 'finished'
[2025-11-22 21:28:28] 2025-11-22 21:27:53,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:28:28] 2025-11-22 21:27:54,346 | INFO     | PID=10852 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 21:28:28] 2025-11-22 21:27:54,346 | INFO     | .. there are 3 such processes running
[2025-11-22 21:28:28] 2025-11-22 21:27:55,124 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-11-22 21:28:28] 2025-11-22 21:27:55,124 | INFO     | this job has now completed (state=finished)
[2025-11-22 21:28:28] 2025-11-22 21:27:55,125 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 21:28:28] 2025-11-22 21:27:55,125 | INFO     | log transfer has been attempted: DONE
[2025-11-22 21:28:28] 2025-11-22 21:27:55,125 | INFO     | job 6894290855 has finished - writing final server update
[2025-11-22 21:28:28] 2025-11-22 21:27:55,125 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 21:28:28] 2025-11-22 21:27:55,125 | INFO     | executing command: lscpu
[2025-11-22 21:28:28] 2025-11-22 21:27:55,144 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 21:28:28] 2025-11-22 21:27:55,347 | INFO     | time since job start (12976s) is within the limit (172800.0s)
[2025-11-22 21:28:28] 2025-11-22 21:27:56,114 | INFO     | monitor loop #952: job 0:6894290855 is in state 'finished'
[2025-11-22 21:28:28] 2025-11-22 21:27:56,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,070 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 21:28:28] 2025-11-22 21:27:57,075 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4321.2179375
[2025-11-22 21:28:28] 2025-11-22 21:27:57,080 | INFO     | using path: /virtma/boinc/slots/1/PanDA_Pilot-6894290855/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,081 | INFO     | extracted standard info from prmon json
[2025-11-22 21:28:28] 2025-11-22 21:27:57,081 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 21:28:28] 2025-11-22 21:27:57,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 21:28:28] 2025-11-22 21:27:57,083 | INFO     | fitting pss+swap vs Time
[2025-11-22 21:28:28] 2025-11-22 21:27:57,083 | INFO     | sum of square deviations: 2996454322.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,084 | INFO     | sum of deviations: 556324589030.0001
[2025-11-22 21:28:28] 2025-11-22 21:27:57,084 | INFO     | mean x: 1763840384.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,084 | INFO     | mean y: 3007845.516431925
[2025-11-22 21:28:28] 2025-11-22 21:27:57,084 | INFO     | intersect: -327473292907.2896
[2025-11-22 21:28:28] 2025-11-22 21:27:57,084 | INFO     | chi2: 23.369763941447044
[2025-11-22 21:28:28] 2025-11-22 21:27:57,085 | INFO     | sum of square deviations: 2790348132.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,085 | INFO     | sum of deviations: 613879671339.5
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | mean x: 1763840231.5
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | mean y: 3050161.716346154
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | intersect: -388043749157.37573
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | chi2: 20.030643493327652
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | current chi2=20.030643493327652 (change=14.288207859033406 %)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | right removable region: 207
[2025-11-22 21:28:28] 2025-11-22 21:27:57,086 | INFO     | sum of square deviations: 2790348132.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | sum of deviations: 477084115026.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | mean x: 1763840536.5
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | mean y: 3066422.096153846
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | intersect: -301572314711.4174
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | chi2: 20.239616388143435
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | current chi2=20.239616388143435 (change=13.394005866495675 %)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,087 | INFO     | left removable region: 10
[2025-11-22 21:28:28] 2025-11-22 21:27:57,088 | INFO     | sum of square deviations: 2370641658.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,088 | INFO     | sum of deviations: 457905660613.99994
[2025-11-22 21:28:28] 2025-11-22 21:27:57,088 | INFO     | mean x: 1763840506.0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,088 | INFO     | mean y: 3168647.035532995
[2025-11-22 21:28:28] 2025-11-22 21:27:57,088 | INFO     | intersect: -340694696587.9227
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | chi2: 14.610296183107241
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | current memory leak: 193.16 B/s (using 197 data points, chi2=14.61)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | could have reported an average CPU frequency of 4225 MHz (10 samples)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | ..............................
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . Timing measurements:
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . get job = 0 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . initial setup = 15 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . payload setup = 2 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . stage-in = 0 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . payload execution = 12943 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . stage-out = 6 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | . log creation = 0 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,089 | INFO     | ..............................
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | 
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | job summary report
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | --------------------------------------------------
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | PanDA job id: 6894290855
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | task id: 47533967
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | errors: (none)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | pilot state: finished 
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | transexitcode: 0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,144 | INFO     | exeerrorcode: 0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | exeerrordiag: 
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | exitcode: 0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | exitmsg: OK
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | cpuconsumptiontime: 125710 s
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | nevents: 1000
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | neventsw: 0
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | pid: 17634
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | pgrp: 17634
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | corecount: 12
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | event service: False
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | sizes: {0: 2297877, 1: 2298732, 3: 2298994, 11: 2299022, 12947: 2330053, 12955: 2339257, 12965: 2339447}
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | --------------------------------------------------
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | 
[2025-11-22 21:28:28] 2025-11-22 21:27:57,145 | INFO     | executing command: ls -lF /virtma/boinc/slots/1
[2025-11-22 21:28:28] 2025-11-22 21:27:57,155 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | job 6894290855 has completed (purged errors)
[2025-11-22 21:28:28] 2025-11-22 21:27:57,156 | INFO     | overall cleanup function is called
[2025-11-22 21:28:28] 2025-11-22 21:27:58,166 | INFO     | --- collectZombieJob: --- 10, [17634]
[2025-11-22 21:28:28] 2025-11-22 21:27:58,166 | INFO     | zombie collector waiting for pid 17634
[2025-11-22 21:28:28] 2025-11-22 21:27:58,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 21:28:28] 2025-11-22 21:27:58,166 | INFO     | collected zombie processes
[2025-11-22 21:28:28] 2025-11-22 21:27:58,166 | INFO     | will attempt to kill all subprocesses of pid=17634
[2025-11-22 21:28:28] 2025-11-22 21:27:58,255 | INFO     | process IDs to be killed: [17634] (in reverse order)
[2025-11-22 21:28:28] 2025-11-22 21:27:58,297 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 21:28:28] 2025-11-22 21:27:58,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 21:28:28] 2025-11-22 21:27:58,300 | INFO     | did not find any defunct processes belonging to 17634
[2025-11-22 21:28:28] 2025-11-22 21:27:58,303 | INFO     | did not find any defunct processes belonging to 17634
[2025-11-22 21:28:28] 2025-11-22 21:27:58,304 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 21:28:28] 2025-11-22 21:27:58,304 | INFO     | ready for new job
[2025-11-22 21:28:28] 2025-11-22 21:27:58,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 21:28:28] 2025-11-22 21:27:58,305 | INFO     | ***************************************
[2025-11-22 21:28:28] 2025-11-22 21:27:58,305 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 21:28:28] 2025-11-22 21:27:58,305 | INFO     | ***************************************
[2025-11-22 21:28:28] 2025-11-22 21:27:58,305 | INFO     | 
[2025-11-22 21:28:28] 2025-11-22 21:27:58,306 | INFO     | architecture information:
[2025-11-22 21:28:28] 2025-11-22 21:27:58,306 | INFO     | executing command: cat /etc/os-release
[2025-11-22 21:28:28] 2025-11-22 21:27:58,313 | INFO     | cat /etc/os-release:
[2025-11-22 21:28:28] NAME="CentOS Linux"
[2025-11-22 21:28:28] VERSION="7 (Core)"
[2025-11-22 21:28:28] ID="centos"
[2025-11-22 21:28:28] ID_LIKE="rhel fedora"
[2025-11-22 21:28:28] VERSION_ID="7"
[2025-11-22 21:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 21:28:28] ANSI_COLOR="0;31"
[2025-11-22 21:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 21:28:28] HOME_URL="https://www.centos.org/"
[2025-11-22 21:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 21:28:28] 
[2025-11-22 21:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 21:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 21:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 21:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 21:28:28] 
[2025-11-22 21:28:28] 2025-11-22 21:27:58,313 | INFO     | ***************************************
[2025-11-22 21:28:28] 2025-11-22 21:27:58,816 | INFO     | executing command: df -mP /virtma/boinc/slots/1
[2025-11-22 21:28:28] 2025-11-22 21:27:58,825 | INFO     | sufficient remaining disk space (962647293952 B)
[2025-11-22 21:28:28] 2025-11-22 21:27:58,825 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 21:28:28] 2025-11-22 21:27:58,825 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 21:28:28] 2025-11-22 21:27:58,825 | INFO     | update_server=False
[2025-11-22 21:28:28] 2025-11-22 21:27:58,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 21:28:28] 2025-11-22 21:27:58,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:28:28] 2025-11-22 21:27:58,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 21:28:28] 2025-11-22 21:27:59,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 21:28:28] 2025-11-22 21:27:59,627 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:28:28] 2025-11-22 21:27:59,627 | INFO     | aborting loop
[2025-11-22 21:28:28] 2025-11-22 21:27:59,822 | INFO     | [monitor] cgroup control has ended
[2025-11-22 21:28:28] 2025-11-22 21:27:59,830 | INFO     | [job] queue monitor thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:27:59,831 | INFO     | [job] retrieve thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:27:59,834 | INFO     | all data control threads have been joined
[2025-11-22 21:28:28] 2025-11-22 21:27:59,929 | INFO     | all payload control threads have been joined
[2025-11-22 21:28:28] 2025-11-22 21:28:00,396 | INFO     | all job control threads have been joined
[2025-11-22 21:28:28] 2025-11-22 21:28:00,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:00,550 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:00,632 | INFO     | [job] job monitor thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:00,838 | INFO     | [data] control thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:00,934 | INFO     | [payload] control thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:00,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,024 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,084 | INFO     | [payload] validate_post thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,111 | INFO     | [job] validate thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,315 | INFO     | [data] copytool_in thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,342 | INFO     | [payload] failed_post thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,402 | INFO     | [job] control thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:01,450 | INFO     | [data] copytool_out thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:02,830 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 21:28:28] 2025-11-22 21:28:03,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140333689984832)>', '<ExcThread(monitor, started 140333023229696)>']
[2025-11-22 21:28:28] 2025-11-22 21:28:08,097 | INFO     | all workflow threads have been joined
[2025-11-22 21:28:28] 2025-11-22 21:28:08,097 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 21:28:28] 2025-11-22 21:28:08,098 | INFO     | traces error code: 0
[2025-11-22 21:28:28] 2025-11-22 21:28:08,098 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 21:28:28] 2025-11-22 21:28:28,514 | INFO     | PID=10852 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | INFO     | .. there are 3 such processes running
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 21:28:28] 2025-11-22 21:28:28,515 | INFO     | [monitor] control thread has ended
[2025-11-22 21:28:28] 2025-11-22 21:28:28,570 [wrapper] ==== pilot stdout END ====
[2025-11-22 21:28:28] 2025-11-22 21:28:28,571 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 21:28:28] 2025-11-22 21:28:28,573 [wrapper] pilotpid: 10852
[2025-11-22 21:28:28] 2025-11-22 21:28:28,574 [wrapper] Pilot exit status: 0
[2025-11-22 21:28:28] 2025-11-22 21:28:28,580 [wrapper] pandaids: 6894290855
[2025-11-22 21:28:28] 2025-11-22 21:28:28,608 [wrapper] cleanup supervisor_pilot 48471 10853
[2025-11-22 21:28:28] 2025-11-22 21:28:28,610 [wrapper] Test setup, not cleaning
[2025-11-22 21:28:28] 2025-11-22 21:28:28,611 [wrapper] apfmon messages muted
[2025-11-22 21:28:28] 2025-11-22 21:28:28,612 [wrapper] ==== wrapper stdout END ====
[2025-11-22 21:28:28] 2025-11-22 21:28:28,613 [wrapper] ==== wrapper stderr END ====
[2025-11-22 21:28:28]  *** Error codes and diagnostics ***
[2025-11-22 21:28:28]     "exeErrorCode": 0,
[2025-11-22 21:28:28]     "exeErrorDiag": "",
[2025-11-22 21:28:28]     "pilotErrorCode": 0,
[2025-11-22 21:28:28]     "pilotErrorDiag": "",
[2025-11-22 21:28:28]  *** Listing of results directory ***
[2025-11-22 21:28:28] total 1307748
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:49 pilot3.tar.gz
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:00 queuedata.json
[2025-11-22 21:28:28] -rwx------ 1 boinc boinc     36292 Nov 21 12:03 runpilot2-wrapper.sh
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc       100 Nov 22 17:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 21:28:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 17:51 run_atlas
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc       105 Nov 22 17:51 job.xml
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:51 start_atlas.sh
[2025-11-22 21:28:28] drwxrwx--x 2 boinc boinc        68 Nov 22 17:51 shared
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc    590102 Nov 22 17:51 input.tar.gz
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc      8919 Nov 22 17:51 init_data.xml
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc 412646201 Nov 22 17:51 EVNT.47493127._002435.pool.root.1
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc         0 Nov 22 17:51 boinc_setup_complete
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc         0 Nov 22 17:51 boinc_lockfile
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc      2784 Nov 22 17:51 pandaJob.out
[2025-11-22 21:28:28] -rw------- 1 boinc boinc    989776 Nov 22 17:51 agis_schedconf.cvmfs.json
[2025-11-22 21:28:28] drwx------ 5 boinc boinc      4096 Nov 22 17:51 pilot3
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc       533 Nov 22 21:23 boinc_task_state.xml
[2025-11-22 21:28:28] -rw------- 1 boinc boinc 914977889 Nov 22 21:27 HITS.47533967._004062.pool.root.1
[2025-11-22 21:28:28] -rw------- 1 boinc boinc      1040 Nov 22 21:27 memory_monitor_summary.json
[2025-11-22 21:28:28] -rw------- 1 boinc boinc   1526164 Nov 22 21:27 agis_ddmendpoints.agis.ALL.json
[2025-11-22 21:28:28] -rw------- 1 boinc boinc   1951867 Nov 22 21:27 log.47533967._004062.job.log.tgz.1
[2025-11-22 21:28:28] -rw------- 1 boinc boinc      8634 Nov 22 21:27 heartbeat.json
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc      8192 Nov 22 21:28 boinc_mmap_file
[2025-11-22 21:28:28] -rw------- 1 boinc boinc       820 Nov 22 21:28 pilotlog.txt
[2025-11-22 21:28:28] -rw------- 1 boinc boinc        95 Nov 22 21:28 pilot_heartbeat.json
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc        29 Nov 22 21:28 wrapper_checkpoint.txt
[2025-11-22 21:28:28] -rw------- 1 boinc boinc   1851168 Nov 22 21:28 log.47533967._004062.job.log.1
[2025-11-22 21:28:28] -rw------- 1 boinc boinc       353 Nov 22 21:28 output.list
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc       620 Nov 22 21:28 runtime_log
[2025-11-22 21:28:28] -rw------- 1 boinc boinc   3819520 Nov 22 21:28 result.tar.gz
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc      8814 Nov 22 21:28 runtime_log.err
[2025-11-22 21:28:28] -rw------- 1 boinc boinc       663 Nov 22 21:28 NcFNDma2eg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiOJKDmdI6ngn.diag
[2025-11-22 21:28:28] -rw-r--r-- 1 boinc boinc     22020 Nov 22 21:28 stderr.txt
[2025-11-22 21:28:28] HITS file was successfully produced:
[2025-11-22 21:28:28] -rw------- 1 boinc boinc 914977889 Nov 22 21:27 shared/HITS.pool.root.1
[2025-11-22 21:28:28]  *** Contents of shared directory: ***
[2025-11-22 21:28:28] total 1300840
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:51 start_atlas.sh
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc    590102 Nov 22 17:51 input.tar.gz
[2025-11-22 21:28:28] -rw-r--r-- 2 boinc boinc 412646201 Nov 22 17:51 ATLAS.root_0
[2025-11-22 21:28:28] -rw------- 1 boinc boinc 914977889 Nov 22 21:27 HITS.pool.root.1
[2025-11-22 21:28:28] -rw------- 1 boinc boinc   3819520 Nov 22 21:28 result.tar.gz
21:28:30 (6923): run_atlas exited; CPU time 125698.221934
21:28:30 (6923): called boinc_finish(0)

</stderr_txt>
]]>

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