Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:42:05 (33269): wrapper (7.7.26015): starting
17:42:05 (33269): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 17:42:05] Arguments: --nthreads 12
[2025-11-22 17:42:05] Threads: 12
[2025-11-22 17:42:05] Checking for CVMFS
[2025-11-22 17:42:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 17:42:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 17:42:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 17:42:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 17:42:14] 2.13.3.0 5957 1454 108224 153180 1 81 4726015 102400000 1735 130560 29 5055861 99.995 60583 10 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 17:42:14] CVMFS is ok
[2025-11-22 17:42:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 17:42:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 17:42:14] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 17:42:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 17:42:14] Further information can be found at the LHC@home message board.
[2025-11-22 17:42:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 17:42:14] Checking for apptainer binary...
[2025-11-22 17:42:14] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 17:42:14] apptainer is not installed, using version from CVMFS
[2025-11-22 17:42:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 17:42:14] crocidura-russula
[2025-11-22 17:42:14] apptainer works
[2025-11-22 17:42:14] Set ATHENA_PROC_NUMBER=12
[2025-11-22 17:42:14] Set ATHENA_CORE_NUMBER=12
[2025-11-22 17:42:14] Starting ATLAS job with PandaID=6894290641
[2025-11-22 17:42:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 21:27:06]  *** The last 200 lines of the pilot log: ***
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | preparing for final server update for job 6894290641 in state='finished'
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | this job has now completed (state=finished)
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | log transfer has been attempted: DONE
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | job 6894290641 has finished - writing final server update
[2025-11-22 21:27:06] 2025-11-22 21:25:59,583 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 21:27:06] 2025-11-22 21:25:59,584 | INFO     | executing command: lscpu
[2025-11-22 21:27:06] 2025-11-22 21:25:59,603 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 21:27:06] 2025-11-22 21:25:59,730 | INFO     | monitor loop #995: job 0:6894290641 is in state 'finished'
[2025-11-22 21:27:06] 2025-11-22 21:25:59,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:27:06] 2025-11-22 21:26:00,990 | INFO     | time since job start (13401s) is within the limit (172800.0s)
[2025-11-22 21:27:06] 2025-11-22 21:26:02,097 | INFO     | PID=37182 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 21:27:06] 2025-11-22 21:26:02,097 | INFO     | .. there are 3 such processes running
[2025-11-22 21:27:06] 2025-11-22 21:26:02,233 | INFO     | monitor loop #996: job 0:6894290641 is in state 'finished'
[2025-11-22 21:27:06] 2025-11-22 21:26:02,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 21:27:06] 2025-11-22 21:26:03,097 | INFO     | time since job start (13404s) is within the limit (172800.0s)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,314 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 21:27:06] 2025-11-22 21:26:04,318 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3931.1236250000006
[2025-11-22 21:27:06] 2025-11-22 21:26:04,323 | INFO     | using path: /virtma/boinc/slots/2/PanDA_Pilot-6894290641/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,323 | INFO     | extracted standard info from prmon json
[2025-11-22 21:27:06] 2025-11-22 21:26:04,323 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 21:27:06] 2025-11-22 21:26:04,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 21:27:06] 2025-11-22 21:26:04,325 | INFO     | fitting pss+swap vs Time
[2025-11-22 21:27:06] 2025-11-22 21:26:04,326 | INFO     | sum of square deviations: 3301699115.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,326 | INFO     | sum of deviations: 659848624678.5
[2025-11-22 21:27:06] 2025-11-22 21:26:04,326 | INFO     | mean x: 1763840057.5
[2025-11-22 21:27:06] 2025-11-22 21:26:04,326 | INFO     | mean y: 2985551.05
[2025-11-22 21:27:06] 2025-11-22 21:26:04,326 | INFO     | intersect: -352502617036.00507
[2025-11-22 21:27:06] 2025-11-22 21:26:04,327 | INFO     | chi2: 25.22711062957476
[2025-11-22 21:27:06] 2025-11-22 21:26:04,327 | INFO     | sum of square deviations: 3081657780.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | sum of deviations: 720763655857.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | mean x: 1763839905.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | mean y: 3027534.8790697674
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | intersect: -412538464426.06915
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | chi2: 21.43825337491893
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | current chi2=21.43825337491893 (change=15.018990126495108 %)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | right removable region: 214
[2025-11-22 21:27:06] 2025-11-22 21:26:04,328 | INFO     | sum of square deviations: 3081657780.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | sum of deviations: 580299169174.0001
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | mean x: 1763840210.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | mean y: 3040627.111627907
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | intersect: -332141240630.0674
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | chi2: 22.599460831052507
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | current chi2=22.599460831052507 (change=10.415976039054401 %)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | left removable region: 10
[2025-11-22 21:27:06] 2025-11-22 21:26:04,329 | INFO     | sum of square deviations: 2632440055.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,330 | INFO     | sum of deviations: 564568674797.0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,330 | INFO     | mean x: 1763840179.5
[2025-11-22 21:27:06] 2025-11-22 21:26:04,330 | INFO     | mean y: 3138462.7352941176
[2025-11-22 21:27:06] 2025-11-22 21:26:04,330 | INFO     | intersect: -378280466059.4644
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | chi2: 17.13433823754974
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | current memory leak: 214.47 B/s (using 204 data points, chi2=17.13)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | could have reported an average CPU frequency of 4197 MHz (11 samples)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | ..............................
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . Timing measurements:
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . get job = 0 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . initial setup = 20 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . payload setup = 2 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . stage-in = 0 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . payload execution = 13375 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . stage-out = 2 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | . log creation = 0 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,331 | INFO     | ..............................
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | 
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | job summary report
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | --------------------------------------------------
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | PanDA job id: 6894290641
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | task id: 47533967
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | errors: (none)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | pilot state: finished 
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | transexitcode: 0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | exeerrorcode: 0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,770 | INFO     | exeerrordiag: 
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | exitcode: 0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | exitmsg: OK
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | cpuconsumptiontime: 126888 s
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | nevents: 1000
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | neventsw: 0
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | pid: 44004
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | pgrp: 44004
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | corecount: 12
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | event service: False
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | sizes: {0: 2298755, 2: 2299017, 11: 2299045, 13382: 2330324, 13385: 2339316, 13387: 2339372, 13391: 2339746}
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | --------------------------------------------------
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | 
[2025-11-22 21:27:06] 2025-11-22 21:26:04,771 | INFO     | executing command: ls -lF /virtma/boinc/slots/2
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | job 6894290641 has completed (purged errors)
[2025-11-22 21:27:06] 2025-11-22 21:26:04,785 | INFO     | overall cleanup function is called
[2025-11-22 21:27:06] 2025-11-22 21:26:05,798 | INFO     | --- collectZombieJob: --- 10, [44004]
[2025-11-22 21:27:06] 2025-11-22 21:26:05,798 | INFO     | zombie collector waiting for pid 44004
[2025-11-22 21:27:06] 2025-11-22 21:26:05,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 21:27:06] 2025-11-22 21:26:05,798 | INFO     | collected zombie processes
[2025-11-22 21:27:06] 2025-11-22 21:26:05,798 | INFO     | will attempt to kill all subprocesses of pid=44004
[2025-11-22 21:27:06] 2025-11-22 21:26:05,878 | INFO     | process IDs to be killed: [44004] (in reverse order)
[2025-11-22 21:27:06] 2025-11-22 21:26:05,916 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 21:27:06] 2025-11-22 21:26:05,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 21:27:06] 2025-11-22 21:26:05,921 | INFO     | did not find any defunct processes belonging to 44004
[2025-11-22 21:27:06] 2025-11-22 21:26:05,924 | INFO     | did not find any defunct processes belonging to 44004
[2025-11-22 21:27:06] 2025-11-22 21:26:05,925 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 21:27:06] 2025-11-22 21:26:05,925 | INFO     | ready for new job
[2025-11-22 21:27:06] 2025-11-22 21:26:05,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 21:27:06] 2025-11-22 21:26:05,927 | INFO     | ***************************************
[2025-11-22 21:27:06] 2025-11-22 21:26:05,927 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 21:27:06] 2025-11-22 21:26:05,927 | INFO     | ***************************************
[2025-11-22 21:27:06] 2025-11-22 21:26:05,927 | INFO     | 
[2025-11-22 21:27:06] 2025-11-22 21:26:05,929 | INFO     | architecture information:
[2025-11-22 21:27:06] 2025-11-22 21:26:05,929 | INFO     | executing command: cat /etc/os-release
[2025-11-22 21:27:06] 2025-11-22 21:26:05,939 | INFO     | cat /etc/os-release:
[2025-11-22 21:27:06] NAME="CentOS Linux"
[2025-11-22 21:27:06] VERSION="7 (Core)"
[2025-11-22 21:27:06] ID="centos"
[2025-11-22 21:27:06] ID_LIKE="rhel fedora"
[2025-11-22 21:27:06] VERSION_ID="7"
[2025-11-22 21:27:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 21:27:06] ANSI_COLOR="0;31"
[2025-11-22 21:27:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 21:27:06] HOME_URL="https://www.centos.org/"
[2025-11-22 21:27:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 21:27:06] 
[2025-11-22 21:27:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 21:27:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 21:27:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 21:27:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 21:27:06] 
[2025-11-22 21:27:06] 2025-11-22 21:26:05,939 | INFO     | ***************************************
[2025-11-22 21:27:06] 2025-11-22 21:26:06,442 | INFO     | executing command: df -mP /virtma/boinc/slots/2
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | INFO     | sufficient remaining disk space (962676654080 B)
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | INFO     | update_server=False
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 21:27:06] 2025-11-22 21:26:06,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 21:27:06] 2025-11-22 21:26:06,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:27:06] 2025-11-22 21:26:06,452 | INFO     | aborting loop
[2025-11-22 21:27:06] 2025-11-22 21:26:06,810 | INFO     | all payload control threads have been joined
[2025-11-22 21:27:06] 2025-11-22 21:26:06,826 | INFO     | all data control threads have been joined
[2025-11-22 21:27:06] 2025-11-22 21:26:07,454 | INFO     | [job] job monitor thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,456 | INFO     | [job] retrieve thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,466 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,703 | INFO     | [job] validate thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,802 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,815 | INFO     | [payload] control thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,830 | INFO     | [data] control thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,855 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:07,987 | INFO     | all job control threads have been joined
[2025-11-22 21:27:06] 2025-11-22 21:26:08,302 | INFO     | [payload] validate_post thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:08,454 | INFO     | [data] copytool_out thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:08,525 | INFO     | [payload] failed_post thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:08,914 | INFO     | [data] copytool_in thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:08,993 | INFO     | [job] control thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:09,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 21:27:06] 2025-11-22 21:26:10,382 | INFO     | [job] queue monitor thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:10,457 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:16,546 | INFO     | job.realtimelogging is not enabled
[2025-11-22 21:27:06] 2025-11-22 21:26:17,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 21:27:06] 2025-11-22 21:26:36,311 | INFO     | PID=37182 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 21:27:06] 2025-11-22 21:26:36,312 | INFO     | .. there are 3 such processes running
[2025-11-22 21:27:06] 2025-11-22 21:26:36,312 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 21:27:06] 2025-11-22 21:26:36,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 21:27:06] 2025-11-22 21:26:36,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 21:27:06] 2025-11-22 21:27:00,214 | INFO     | [monitor] cgroup control has ended
[2025-11-22 21:27:06] 2025-11-22 21:27:00,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475377452864)>', '<ExcThread(monitor, started 140474606147328)>']
[2025-11-22 21:27:06] 2025-11-22 21:27:01,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 21:27:06] 2025-11-22 21:27:01,416 | INFO     | [monitor] control thread has ended
[2025-11-22 21:27:06] 2025-11-22 21:27:05,948 | INFO     | all workflow threads have been joined
[2025-11-22 21:27:06] 2025-11-22 21:27:05,948 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 21:27:06] 2025-11-22 21:27:05,948 | INFO     | traces error code: 0
[2025-11-22 21:27:06] 2025-11-22 21:27:05,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 21:27:06] 2025-11-22 21:27:06,000 [wrapper] ==== pilot stdout END ====
[2025-11-22 21:27:06] 2025-11-22 21:27:06,002 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 21:27:06] 2025-11-22 21:27:06,004 [wrapper] pilotpid: 37182
[2025-11-22 21:27:06] 2025-11-22 21:27:06,005 [wrapper] Pilot exit status: 0
[2025-11-22 21:27:06] 2025-11-22 21:27:06,011 [wrapper] pandaids: 6894290641
[2025-11-22 21:27:06] 2025-11-22 21:27:06,039 [wrapper] cleanup supervisor_pilot 43646 37183
[2025-11-22 21:27:06] 2025-11-22 21:27:06,041 [wrapper] Test setup, not cleaning
[2025-11-22 21:27:06] 2025-11-22 21:27:06,043 [wrapper] apfmon messages muted
[2025-11-22 21:27:06] 2025-11-22 21:27:06,045 [wrapper] ==== wrapper stdout END ====
[2025-11-22 21:27:06] 2025-11-22 21:27:06,046 [wrapper] ==== wrapper stderr END ====
[2025-11-22 21:27:06]  *** Error codes and diagnostics ***
[2025-11-22 21:27:06]     "exeErrorCode": 0,
[2025-11-22 21:27:06]     "exeErrorDiag": "",
[2025-11-22 21:27:06]     "pilotErrorCode": 0,
[2025-11-22 21:27:06]     "pilotErrorDiag": "",
[2025-11-22 21:27:06]  *** Listing of results directory ***
[2025-11-22 21:27:06] total 1310524
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:32 pilot3.tar.gz
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc      5112 Nov 21 11:46 queuedata.json
[2025-11-22 21:27:06] -rwx------ 1 boinc boinc     36292 Nov 21 11:46 runpilot2-wrapper.sh
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc       100 Nov 22 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 21:27:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 17:42 run_atlas
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc       105 Nov 22 17:42 job.xml
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:42 start_atlas.sh
[2025-11-22 21:27:06] drwxrwx--x 2 boinc boinc        68 Nov 22 17:42 shared
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc    590110 Nov 22 17:42 input.tar.gz
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc 409626504 Nov 22 17:42 EVNT.47493127._002426.pool.root.1
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc         0 Nov 22 17:42 boinc_setup_complete
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc      8919 Nov 22 17:42 init_data.xml
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc         0 Nov 22 17:42 boinc_lockfile
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc      2785 Nov 22 17:42 pandaJob.out
[2025-11-22 21:27:06] -rw------- 1 boinc boinc    989776 Nov 22 17:42 agis_schedconf.cvmfs.json
[2025-11-22 21:27:06] drwx------ 5 boinc boinc      4096 Nov 22 17:42 pilot3
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc       532 Nov 22 21:20 boinc_task_state.xml
[2025-11-22 21:27:06] -rw------- 1 boinc boinc 920656553 Nov 22 21:25 HITS.47533967._003973.pool.root.1
[2025-11-22 21:27:06] -rw------- 1 boinc boinc      1049 Nov 22 21:25 memory_monitor_summary.json
[2025-11-22 21:27:06] -rw------- 1 boinc boinc   1526164 Nov 22 21:25 agis_ddmendpoints.agis.ALL.json
[2025-11-22 21:27:06] -rw------- 1 boinc boinc   1966374 Nov 22 21:25 log.47533967._003973.job.log.tgz.1
[2025-11-22 21:27:06] -rw------- 1 boinc boinc      8651 Nov 22 21:26 heartbeat.json
[2025-11-22 21:27:06] -rw------- 1 boinc boinc        95 Nov 22 21:26 pilot_heartbeat.json
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc      8192 Nov 22 21:26 boinc_mmap_file
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc        29 Nov 22 21:26 wrapper_checkpoint.txt
[2025-11-22 21:27:06] -rw------- 1 boinc boinc      4893 Nov 22 21:27 pilotlog.txt
[2025-11-22 21:27:06] -rw------- 1 boinc boinc   1922278 Nov 22 21:27 log.47533967._003973.job.log.1
[2025-11-22 21:27:06] -rw------- 1 boinc boinc       353 Nov 22 21:27 output.list
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc       620 Nov 22 21:27 runtime_log
[2025-11-22 21:27:06] -rw------- 1 boinc boinc   3911680 Nov 22 21:27 result.tar.gz
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc      8814 Nov 22 21:27 runtime_log.err
[2025-11-22 21:27:06] -rw------- 1 boinc boinc       664 Nov 22 21:27 gPQMDmvleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9NJKDm5837em.diag
[2025-11-22 21:27:06] -rw-r--r-- 1 boinc boinc     22004 Nov 22 21:27 stderr.txt
[2025-11-22 21:27:06] HITS file was successfully produced:
[2025-11-22 21:27:06] -rw------- 1 boinc boinc 920656553 Nov 22 21:25 shared/HITS.pool.root.1
[2025-11-22 21:27:06]  *** Contents of shared directory: ***
[2025-11-22 21:27:06] total 1303524
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc     15847 Nov 22 17:42 start_atlas.sh
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc    590110 Nov 22 17:42 input.tar.gz
[2025-11-22 21:27:06] -rw-r--r-- 2 boinc boinc 409626504 Nov 22 17:42 ATLAS.root_0
[2025-11-22 21:27:06] -rw------- 1 boinc boinc 920656553 Nov 22 21:25 HITS.pool.root.1
[2025-11-22 21:27:06] -rw------- 1 boinc boinc   3911680 Nov 22 21:27 result.tar.gz
21:27:07 (33269): run_atlas exited; CPU time 126872.711089
21:27:07 (33269): called boinc_finish(0)

</stderr_txt>
]]>

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