Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:35:14 (15336): wrapper (7.7.26015): starting
01:35:14 (15336): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:35:14] Arguments: --nthreads 8
[2025-11-22 01:35:14] Threads: 8
[2025-11-22 01:35:14] Checking for CVMFS
[2025-11-22 01:35:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:35:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:35:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:35:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:35:14] 2.11.2.0 28705 111730 143468 153162 2 81 9661444 18432001 1885 130560 0 80723132 99.973 4802270 31941 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 01:35:14] CVMFS is ok
[2025-11-22 01:35:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:35:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:35:14] Further information can be found at the LHC@home message board.
[2025-11-22 01:35:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:35:14] Checking for apptainer binary...
[2025-11-22 01:35:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:35:14] Running /usr/bin/apptainer --version
[2025-11-22 01:35:14] apptainer version 1.3.2-1.el7
[2025-11-22 01:35:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:35:15] c-206-27.aglt2.org
[2025-11-22 01:35:15] apptainer works
[2025-11-22 01:35:15] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:35:15] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:35:15] Starting ATLAS job with PandaID=6894290686
[2025-11-22 01:35:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:31:16 (5758): wrapper (7.7.26015): starting
05:31:16 (5758): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 05:31:16] Arguments: --nthreads 8
[2025-11-22 05:31:16] Threads: 8
[2025-11-22 05:31:16] This job has been restarted, cleaning up previous attempt
[2025-11-22 05:31:16] Checking for CVMFS
[2025-11-22 05:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 05:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 05:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 05:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 05:31:17] 2.11.2.0 28705 111966 139580 153168 3 56 9682180 18432001 1 130560 0 80943409 99.973 4810277 31942 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 05:31:17] CVMFS is ok
[2025-11-22 05:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 05:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 05:31:17] Further information can be found at the LHC@home message board.
[2025-11-22 05:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 05:31:17] Checking for apptainer binary...
[2025-11-22 05:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 05:31:17] Running /usr/bin/apptainer --version
[2025-11-22 05:31:17] apptainer version 1.3.2-1.el7
[2025-11-22 05:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 05:31:18] c-206-27.aglt2.org
[2025-11-22 05:31:18] apptainer works
[2025-11-22 05:31:18] Set ATHENA_PROC_NUMBER=8
[2025-11-22 05:31:18] Set ATHENA_CORE_NUMBER=8
[2025-11-22 05:31:18] Starting ATLAS job with PandaID=6894290686
[2025-11-22 05:31:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 00:45:38]  *** The last 200 lines of the pilot log: ***
[2025-11-23 00:45:38] 2025-11-23 05:45:02,945 | INFO     | monitor loop #4937: job 0:6894290686 is in state 'finished'
[2025-11-23 00:45:38] 2025-11-23 05:45:02,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,623 | INFO     | time since job start (69213s) is within the limit (172800.0s)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,731 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 00:45:38] 2025-11-23 05:45:04,735 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2466.75
[2025-11-23 00:45:38] 2025-11-23 05:45:04,738 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894290686/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,738 | INFO     | extracted standard info from prmon json
[2025-11-23 00:45:38] 2025-11-23 05:45:04,738 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 00:45:38] 2025-11-23 05:45:04,738 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 00:45:38] 2025-11-23 05:45:04,753 | INFO     | fitting pss+swap vs Time
[2025-11-23 00:45:38] 2025-11-23 05:45:04,754 | INFO     | sum of square deviations: 452186703139.64716
[2025-11-23 00:45:38] 2025-11-23 05:45:04,777 | INFO     | sum of deviations: 2271113941397.7227
[2025-11-23 00:45:38] 2025-11-23 05:45:04,777 | INFO     | mean x: 1763842076.303351
[2025-11-23 00:45:38] 2025-11-23 05:45:04,777 | INFO     | mean y: 2871453.521164021
[2025-11-23 00:45:38] 2025-11-23 05:45:04,778 | INFO     | intersect: -8856049656.06158
[2025-11-23 00:45:38] 2025-11-23 05:45:04,779 | INFO     | chi2: 5.213828468587346
[2025-11-23 00:45:38] 2025-11-23 05:45:04,780 | INFO     | sum of square deviations: 446232013523.9057
[2025-11-23 00:45:38] 2025-11-23 05:45:04,808 | INFO     | sum of deviations: 2584754292356.8213
[2025-11-23 00:45:38] 2025-11-23 05:45:04,808 | INFO     | mean x: 1763841923.8069088
[2025-11-23 00:45:38] 2025-11-23 05:45:04,808 | INFO     | mean y: 2879482.4074402126
[2025-11-23 00:45:38] 2025-11-23 05:45:04,808 | INFO     | intersect: -10213998387.011894
[2025-11-23 00:45:38] 2025-11-23 05:45:04,809 | INFO     | chi2: 2.968904645130323
[2025-11-23 00:45:38] 2025-11-23 05:45:04,809 | INFO     | current chi2=2.968904645130323 (change=43.05710931961808 %)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,811 | INFO     | sum of square deviations: 440329767896.2619
[2025-11-23 00:45:38] 2025-11-23 05:45:04,849 | INFO     | sum of deviations: 2667124076702.6533
[2025-11-23 00:45:38] 2025-11-23 05:45:04,849 | INFO     | mean x: 1763841771.3096085
[2025-11-23 00:45:38] 2025-11-23 05:45:04,849 | INFO     | mean y: 2881607.1619217084
[2025-11-23 00:45:38] 2025-11-23 05:45:04,849 | INFO     | intersect: -10680894959.272774
[2025-11-23 00:45:38] 2025-11-23 05:45:04,851 | INFO     | chi2: 2.6732415672606504
[2025-11-23 00:45:38] 2025-11-23 05:45:04,851 | INFO     | current chi2=2.6732415672606504 (change=9.958658603422215 %)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,851 | INFO     | right removable region: 1123
[2025-11-23 00:45:38] 2025-11-23 05:45:04,853 | INFO     | sum of square deviations: 446231457813.9061
[2025-11-23 00:45:38] 2025-11-23 05:45:04,895 | INFO     | sum of deviations: 1953763945077.4888
[2025-11-23 00:45:38] 2025-11-23 05:45:04,895 | INFO     | mean x: 1763842228.8069088
[2025-11-23 00:45:38] 2025-11-23 05:45:04,895 | INFO     | mean y: 2879572.116917626
[2025-11-23 00:45:38] 2025-11-23 05:45:04,895 | INFO     | intersect: -7719864513.050677
[2025-11-23 00:45:38] 2025-11-23 05:45:04,896 | INFO     | chi2: 2.927037622327158
[2025-11-23 00:45:38] 2025-11-23 05:45:04,896 | INFO     | current chi2=2.927037622327158 (change=43.86010893986659 %)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,897 | INFO     | sum of square deviations: 440328862473.8747
[2025-11-23 00:45:38] 2025-11-23 05:45:04,933 | INFO     | sum of deviations: 1859607541233.1875
[2025-11-23 00:45:38] 2025-11-23 05:45:04,934 | INFO     | mean x: 1763842381.308719
[2025-11-23 00:45:38] 2025-11-23 05:45:04,934 | INFO     | mean y: 2882004.440391459
[2025-11-23 00:45:38] 2025-11-23 05:45:04,934 | INFO     | intersect: -7446219958.579368
[2025-11-23 00:45:38] 2025-11-23 05:45:04,936 | INFO     | chi2: 2.8263925182578036
[2025-11-23 00:45:38] 2025-11-23 05:45:04,936 | INFO     | current chi2=2.8263925182578036 (change=3.438462946346965 %)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,936 | INFO     | left removable region: 20
[2025-11-23 00:45:38] 2025-11-23 05:45:04,938 | INFO     | sum of square deviations: 416107340903.52686
[2025-11-23 00:45:38] 2025-11-23 05:45:04,973 | INFO     | sum of deviations: 2128051736760.2932
[2025-11-23 00:45:38] 2025-11-23 05:45:04,974 | INFO     | mean x: 1763842350.8132367
[2025-11-23 00:45:38] 2025-11-23 05:45:04,974 | INFO     | mean y: 2895943.020852221
[2025-11-23 00:45:38] 2025-11-23 05:45:04,974 | INFO     | intersect: -9017727845.708975
[2025-11-23 00:45:38] 2025-11-23 05:45:04,975 | INFO     | chi2: 0.20691193165863986
[2025-11-23 00:45:38] 2025-11-23 05:45:04,975 | INFO     | current memory leak: 5.11 B/s (using 1103 data points, chi2=0.21)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | could have reported an average CPU frequency of 2584 MHz (41 samples)
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | ..............................
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . Timing measurements:
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . get job = 0 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . initial setup = 2 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . payload setup = 7 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . stage-in = 0 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,976 | INFO     | . payload execution = 69175 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,977 | INFO     | . stage-out = 3 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,977 | INFO     | . log creation = 0 s
[2025-11-23 00:45:38] 2025-11-23 05:45:04,977 | INFO     | ..............................
[2025-11-23 00:45:38] 2025-11-23 05:45:05,160 | INFO     | 
[2025-11-23 00:45:38] 2025-11-23 05:45:05,160 | INFO     | job summary report
[2025-11-23 00:45:38] 2025-11-23 05:45:05,160 | INFO     | --------------------------------------------------
[2025-11-23 00:45:38] 2025-11-23 05:45:05,160 | INFO     | PanDA job id: 6894290686
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | task id: 47533967
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | errors: (none)
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | pilot state: finished 
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | transexitcode: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:05,161 | INFO     | exeerrorcode: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | exeerrordiag: 
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | exitcode: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | exitmsg: OK
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | cpuconsumptiontime: 540061 s
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | nevents: 1000
[2025-11-23 00:45:38] 2025-11-23 05:45:05,162 | INFO     | neventsw: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | pid: 3802
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | pgrp: 3802
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | corecount: 8
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | event service: False
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | sizes: {0: 2298585, 1: 2298784, 5: 2299046, 11: 2299102, 69186: 2355243, 69191: 2364421, 69197: 2364707}
[2025-11-23 00:45:38] 2025-11-23 05:45:05,163 | INFO     | --------------------------------------------------
[2025-11-23 00:45:38] 2025-11-23 05:45:05,164 | INFO     | 
[2025-11-23 00:45:38] 2025-11-23 05:45:05,164 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 00:45:38] 2025-11-23 05:45:05,181 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,183 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 00:45:38] 2025-11-23 05:45:05,184 | INFO     | job 6894290686 has completed (purged errors)
[2025-11-23 00:45:38] 2025-11-23 05:45:05,184 | INFO     | overall cleanup function is called
[2025-11-23 00:45:38] 2025-11-23 05:45:06,200 | INFO     | --- collectZombieJob: --- 10, [3802]
[2025-11-23 00:45:38] 2025-11-23 05:45:06,200 | INFO     | zombie collector waiting for pid 3802
[2025-11-23 00:45:38] 2025-11-23 05:45:06,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 00:45:38] 2025-11-23 05:45:06,201 | INFO     | collected zombie processes
[2025-11-23 00:45:38] 2025-11-23 05:45:06,201 | INFO     | will attempt to kill all subprocesses of pid=3802
[2025-11-23 00:45:38] 2025-11-23 05:45:06,356 | INFO     | process IDs to be killed: [3802] (in reverse order)
[2025-11-23 00:45:38] 2025-11-23 05:45:06,417 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 00:45:38] 2025-11-23 05:45:06,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 00:45:38] 2025-11-23 05:45:06,424 | INFO     | did not find any defunct processes belonging to 3802
[2025-11-23 00:45:38] 2025-11-23 05:45:06,429 | INFO     | did not find any defunct processes belonging to 3802
[2025-11-23 00:45:38] 2025-11-23 05:45:06,433 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 00:45:38] 2025-11-23 05:45:06,433 | INFO     | ready for new job
[2025-11-23 00:45:38] 2025-11-23 05:45:06,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 00:45:38] 2025-11-23 05:45:06,437 | INFO     | ***************************************
[2025-11-23 00:45:38] 2025-11-23 05:45:06,437 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 00:45:38] 2025-11-23 05:45:06,437 | INFO     | ***************************************
[2025-11-23 00:45:38] 2025-11-23 05:45:06,437 | INFO     | 
[2025-11-23 00:45:38] 2025-11-23 05:45:06,438 | INFO     | architecture information:
[2025-11-23 00:45:38] 2025-11-23 05:45:06,439 | INFO     | executing command: cat /etc/os-release
[2025-11-23 00:45:38] 2025-11-23 05:45:06,452 | INFO     | cat /etc/os-release:
[2025-11-23 00:45:38] NAME="CentOS Linux"
[2025-11-23 00:45:38] VERSION="7 (Core)"
[2025-11-23 00:45:38] ID="centos"
[2025-11-23 00:45:38] ID_LIKE="rhel fedora"
[2025-11-23 00:45:38] VERSION_ID="7"
[2025-11-23 00:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 00:45:38] ANSI_COLOR="0;31"
[2025-11-23 00:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 00:45:38] HOME_URL="https://www.centos.org/"
[2025-11-23 00:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 00:45:38] 
[2025-11-23 00:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 00:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 00:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 00:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 00:45:38] 
[2025-11-23 00:45:38] 2025-11-23 05:45:06,452 | INFO     | ***************************************
[2025-11-23 00:45:38] 2025-11-23 05:45:06,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 00:45:38] 2025-11-23 05:45:06,972 | INFO     | sufficient remaining disk space (24864882688 B)
[2025-11-23 00:45:38] 2025-11-23 05:45:06,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 00:45:38] 2025-11-23 05:45:06,972 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 00:45:38] 2025-11-23 05:45:06,973 | INFO     | update_server=False
[2025-11-23 00:45:38] 2025-11-23 05:45:06,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 00:45:38] 2025-11-23 05:45:06,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:45:38] 2025-11-23 05:45:06,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 00:45:38] 2025-11-23 05:45:06,974 | INFO     | aborting loop
[2025-11-23 00:45:38] 2025-11-23 05:45:06,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 00:45:38] 2025-11-23 05:45:07,564 | INFO     | all job control threads have been joined
[2025-11-23 00:45:38] 2025-11-23 05:45:07,867 | INFO     | all data control threads have been joined
[2025-11-23 00:45:38] 2025-11-23 05:45:07,933 | INFO     | all payload control threads have been joined
[2025-11-23 00:45:38] 2025-11-23 05:45:07,975 | INFO     | [job] retrieve thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:07,975 | INFO     | [job] queue monitor thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:07,976 | INFO     | [job] job monitor thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,082 | INFO     | [data] copytool_in thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,161 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,199 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,413 | INFO     | [payload] failed_post thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,569 | INFO     | [job] control thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,583 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,858 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,872 | INFO     | [data] control thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,939 | INFO     | [payload] control thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:08,981 | INFO     | [data] copytool_out thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:09,178 | INFO     | [payload] validate_post thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:09,229 | INFO     | [job] validate thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:09,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 00:45:38] 2025-11-23 05:45:13,437 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 00:45:38] 2025-11-23 05:45:26,343 | INFO     | [monitor] cgroup control has ended
[2025-11-23 00:45:38] 2025-11-23 05:45:26,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356258178880)>', '<ExcThread(monitor, started 140355362088704)>']
[2025-11-23 00:45:38] 2025-11-23 05:45:31,933 | INFO     | all workflow threads have been joined
[2025-11-23 00:45:38] 2025-11-23 05:45:31,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 00:45:38] 2025-11-23 05:45:31,934 | INFO     | traces error code: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:31,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 00:45:38] 2025-11-23 05:45:37,880 | INFO     | PID=16889 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 00:45:38] 2025-11-23 05:45:37,880 | INFO     | .. there are 3 such processes running
[2025-11-23 00:45:38] 2025-11-23 05:45:37,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 00:45:38] 2025-11-23 05:45:37,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 00:45:38] 2025-11-23 05:45:37,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 00:45:38] 2025-11-23 05:45:37,881 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 00:45:38] 2025-11-23 05:45:37,881 | INFO     | [monitor] control thread has ended
[2025-11-23 00:45:38] 2025-11-23 05:45:37,996 [wrapper] ==== pilot stdout END ====
[2025-11-23 00:45:38] 2025-11-23 05:45:37,999 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 00:45:38] 2025-11-23 05:45:38,003 [wrapper] pilotpid: 16889
[2025-11-23 00:45:38] 2025-11-23 05:45:38,005 [wrapper] Pilot exit status: 0
[2025-11-23 00:45:38] 2025-11-23 05:45:38,015 [wrapper] pandaids: 6894290686 6894290686
[2025-11-23 00:45:38] 2025-11-23 05:45:38,054 [wrapper] cleanup supervisor_pilot 20703 16890
[2025-11-23 00:45:38] 2025-11-23 05:45:38,057 [wrapper] Test setup, not cleaning
[2025-11-23 00:45:38] 2025-11-23 05:45:38,059 [wrapper] apfmon messages muted
[2025-11-23 00:45:38] 2025-11-23 05:45:38,062 [wrapper] ==== wrapper stdout END ====
[2025-11-23 00:45:38] 2025-11-23 05:45:38,064 [wrapper] ==== wrapper stderr END ====
[2025-11-23 00:45:38]  *** Error codes and diagnostics ***
[2025-11-23 00:45:38]     "exeErrorCode": 0,
[2025-11-23 00:45:38]     "exeErrorDiag": "",
[2025-11-23 00:45:38]     "pilotErrorCode": 0,
[2025-11-23 00:45:38]     "pilotErrorDiag": "",
[2025-11-23 00:45:38]  *** Listing of results directory ***
[2025-11-23 00:45:38] total 1727644
[2025-11-23 00:45:38] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 06:49 pilot3.tar.gz
[2025-11-23 00:45:38] -rwx------ 1 boincer umatlas     36292 Nov 21 06:52 runpilot2-wrapper.sh
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 06:52 queuedata.json
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas       100 Nov 22 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 00:45:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 01:35 run_atlas
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas       105 Nov 22 01:35 job.xml
[2025-11-23 00:45:38] -rw-r--r-- 3 boincer umatlas 410479450 Nov 22 01:35 EVNT.47493127._002430.pool.root.1
[2025-11-23 00:45:38] -rw-r--r-- 3 boincer umatlas 410479450 Nov 22 01:35 ATLAS.root_0
[2025-11-23 00:45:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:35 start_atlas.sh
[2025-11-23 00:45:38] drwxrwx--x 2 boincer umatlas      4096 Nov 22 01:35 shared
[2025-11-23 00:45:38] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 01:35 input.tar.gz
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas         0 Nov 22 01:35 boinc_lockfile
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 05:31 pandaJob.out
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas        57 Nov 22 05:31 setup.sh.local
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas    989768 Nov 22 05:31 agis_schedconf.cvmfs.json
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas       533 Nov 23 00:33 boinc_task_state.xml
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas 920490094 Nov 23 00:44 HITS.47533967._004018.pool.root.1
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas      1062 Nov 23 00:44 memory_monitor_summary.json
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas        96 Nov 23 00:44 pilot_heartbeat.json
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas   1526164 Nov 23 00:44 agis_ddmendpoints.agis.ALL.json
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas   2295214 Nov 23 00:44 log.47533967._004018.job.log.tgz.1
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas      8663 Nov 23 00:45 heartbeat.json
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas      5953 Nov 23 00:45 init_data.xml
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 00:45 boinc_mmap_file
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas        29 Nov 23 00:45 wrapper_checkpoint.txt
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas       820 Nov 23 00:45 pilotlog.txt
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas   9571774 Nov 23 00:45 log.47533967._004018.job.log.1
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas       353 Nov 23 00:45 output.list
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas       620 Nov 23 00:45 runtime_log
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas  11888640 Nov 23 00:45 result.tar.gz
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas       793 Nov 23 00:45 VknMDmfreg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaaHKDmD3ZF6m.diag
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas      9428 Nov 23 00:45 runtime_log.err
[2025-11-23 00:45:38] -rw-r--r-- 1 boincer umatlas     23425 Nov 23 00:45 stderr.txt
[2025-11-23 00:45:38] HITS file was successfully produced:
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas 920490094 Nov 23 00:44 shared/HITS.pool.root.1
[2025-11-23 00:45:38]  *** Contents of shared directory: ***
[2025-11-23 00:45:38] total 1311992
[2025-11-23 00:45:38] -rw-r--r-- 3 boincer umatlas 410479450 Nov 22 01:35 ATLAS.root_0
[2025-11-23 00:45:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:35 start_atlas.sh
[2025-11-23 00:45:38] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 01:35 input.tar.gz
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas 920490094 Nov 23 00:44 HITS.pool.root.1
[2025-11-23 00:45:38] -rw------- 1 boincer umatlas  11888640 Nov 23 00:45 result.tar.gz
00:45:39 (5758): run_atlas exited; CPU time 539543.186315
00:45:39 (5758): called boinc_finish(0)

</stderr_txt>
]]>

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