Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:37 (45897): wrapper (7.7.26015): starting
19:11:37 (45897): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 19:11:37] Arguments: --nthreads 12
[2025-11-22 19:11:37] Threads: 12
[2025-11-22 19:11:37] Checking for CVMFS
[2025-11-22 19:11:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 19:11:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 19:11:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 19:11:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 19:11:37] 2.13.3.0 5957 1544 109092 153182 2 81 4732878 102400000 2086 130560 29 5272879 99.995 63256 11 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 19:11:37] CVMFS is ok
[2025-11-22 19:11:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 19:11:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 19:11:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 19:11:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 19:11:37] Further information can be found at the LHC@home message board.
[2025-11-22 19:11:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 19:11:37] Checking for apptainer binary...
[2025-11-22 19:11:37] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 19:11:37] apptainer is not installed, using version from CVMFS
[2025-11-22 19:11:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 19:11:37] crocidura-russula
[2025-11-22 19:11:37] apptainer works
[2025-11-22 19:11:38] Set ATHENA_PROC_NUMBER=12
[2025-11-22 19:11:38] Set ATHENA_CORE_NUMBER=12
[2025-11-22 19:11:38] Starting ATLAS job with PandaID=6891572747
[2025-11-22 19:11:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:51:16]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:51:16] 2025-11-22 22:50:03,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:51:16] 2025-11-22 22:50:04,991 | INFO     | time since job start (13093s) is within the limit (172800.0s)
[2025-11-22 22:51:16] 2025-11-22 22:50:06,122 | INFO     | PID=1183 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 22:51:16] 2025-11-22 22:50:06,122 | INFO     | .. there are 3 such processes running
[2025-11-22 22:51:16] 2025-11-22 22:50:06,366 | INFO     | monitor loop #964: job 0:6891572747 is in state 'finished'
[2025-11-22 22:51:16] 2025-11-22 22:50:06,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:51:16] 2025-11-22 22:50:07,122 | INFO     | time since job start (13096s) is within the limit (172800.0s)
[2025-11-22 22:51:16] 2025-11-22 22:50:08,869 | INFO     | monitor loop #965: job 0:6891572747 is in state 'finished'
[2025-11-22 22:51:16] 2025-11-22 22:50:08,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:51:16] 2025-11-22 22:50:09,128 | INFO     | time since job start (13098s) is within the limit (172800.0s)
[2025-11-22 22:51:16] 2025-11-22 22:50:09,128 | INFO     | 13105s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 22:51:16] 2025-11-22 22:50:11,133 | INFO     | time since job start (13100s) is within the limit (172800.0s)
[2025-11-22 22:51:16] 2025-11-22 22:50:11,370 | INFO     | monitor loop #966: job 0:6891572747 is in state 'finished'
[2025-11-22 22:51:16] 2025-11-22 22:50:11,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:51:16] 2025-11-22 22:50:13,138 | INFO     | time since job start (13102s) is within the limit (172800.0s)
[2025-11-22 22:51:16] 2025-11-22 22:50:13,873 | INFO     | monitor loop #967: job 0:6891572747 is in state 'finished'
[2025-11-22 22:51:16] 2025-11-22 22:50:13,873 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,249 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 22:51:16] 2025-11-22 22:50:14,254 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4294.1055625
[2025-11-22 22:51:16] 2025-11-22 22:50:14,260 | INFO     | using path: /virtma/boinc/slots/0/PanDA_Pilot-6891572747/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,260 | INFO     | extracted standard info from prmon json
[2025-11-22 22:51:16] 2025-11-22 22:50:14,260 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:51:16] 2025-11-22 22:50:14,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:51:16] 2025-11-22 22:50:14,263 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:51:16] 2025-11-22 22:50:14,263 | INFO     | sum of square deviations: 3038856977.5
[2025-11-22 22:51:16] 2025-11-22 22:50:14,264 | INFO     | sum of deviations: 486716358791.4999
[2025-11-22 22:51:16] 2025-11-22 22:50:14,264 | INFO     | mean x: 1763845227.5
[2025-11-22 22:51:16] 2025-11-22 22:50:14,264 | INFO     | mean y: 2786179.9392523365
[2025-11-22 22:51:16] 2025-11-22 22:50:14,264 | INFO     | intersect: -282502225723.1965
[2025-11-22 22:51:16] 2025-11-22 22:50:14,264 | INFO     | chi2: 34.08255368874897
[2025-11-22 22:51:16] 2025-11-22 22:50:14,265 | INFO     | sum of square deviations: 2830787960.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,265 | INFO     | sum of deviations: 552188448223.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | mean x: 1763845075.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | mean y: 2834195.6842105263
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | intersect: -344062100597.2528
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | chi2: 28.989794362524254
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | current chi2=28.989794362524254 (change=14.942422955548354 %)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | right removable region: 208
[2025-11-22 22:51:16] 2025-11-22 22:50:14,266 | INFO     | sum of square deviations: 2830787960.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | sum of deviations: 413677102545.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | mean x: 1763845380.0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | mean y: 2839669.961722488
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | intersect: -257756645125.84915
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | chi2: 31.06682088960975
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | current chi2=31.06682088960975 (change=8.848318194345715 %)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,267 | INFO     | left removable region: 10
[2025-11-22 22:51:16] 2025-11-22 22:50:14,268 | INFO     | sum of square deviations: 2406926989.5
[2025-11-22 22:51:16] 2025-11-22 22:50:14,268 | INFO     | sum of deviations: 424015759037.00006
[2025-11-22 22:51:16] 2025-11-22 22:50:14,268 | INFO     | mean x: 1763845349.5
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | mean y: 2957239.909090909
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | intersect: -310724467378.60364
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | chi2: 22.914216421728995
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | current memory leak: 176.16 B/s (using 198 data points, chi2=22.91)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | could have reported an average CPU frequency of 4191 MHz (11 samples)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | ..............................
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | . Timing measurements:
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | . get job = 0 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | . initial setup = 7 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | . payload setup = 3 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,269 | INFO     | . stage-in = 0 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,270 | INFO     | . payload execution = 13045 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,270 | INFO     | . stage-out = 9 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,270 | INFO     | . log creation = 0 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,270 | INFO     | ..............................
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | 
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | job summary report
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | --------------------------------------------------
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | PanDA job id: 6891572747
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | task id: 47493068
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | errors: (none)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | pilot state: finished 
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | transexitcode: 0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,708 | INFO     | exeerrorcode: 0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | exeerrordiag: 
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | exitcode: 0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | exitmsg: OK
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | cpuconsumptiontime: 114081 s
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | nevents: 1000
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | neventsw: 0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | pid: 8108
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | pgrp: 8108
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | corecount: 12
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | event service: False
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | sizes: {0: 2298795, 2: 2299057, 11: 2299085, 13052: 2330378, 13061: 2339370, 13062: 2339426, 13089: 2339578}
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | --------------------------------------------------
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | 
[2025-11-22 22:51:16] 2025-11-22 22:50:14,709 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-11-22 22:51:16] 2025-11-22 22:50:14,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | job 6891572747 has completed (purged errors)
[2025-11-22 22:51:16] 2025-11-22 22:50:14,724 | INFO     | overall cleanup function is called
[2025-11-22 22:51:16] 2025-11-22 22:50:15,738 | INFO     | --- collectZombieJob: --- 10, [8108]
[2025-11-22 22:51:16] 2025-11-22 22:50:15,738 | INFO     | zombie collector waiting for pid 8108
[2025-11-22 22:51:16] 2025-11-22 22:50:15,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:51:16] 2025-11-22 22:50:15,738 | INFO     | collected zombie processes
[2025-11-22 22:51:16] 2025-11-22 22:50:15,738 | INFO     | will attempt to kill all subprocesses of pid=8108
[2025-11-22 22:51:16] 2025-11-22 22:50:15,844 | INFO     | process IDs to be killed: [8108] (in reverse order)
[2025-11-22 22:51:16] 2025-11-22 22:50:15,897 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:51:16] 2025-11-22 22:50:15,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:51:16] 2025-11-22 22:50:15,901 | INFO     | did not find any defunct processes belonging to 8108
[2025-11-22 22:51:16] 2025-11-22 22:50:15,904 | INFO     | did not find any defunct processes belonging to 8108
[2025-11-22 22:51:16] 2025-11-22 22:50:15,904 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:51:16] 2025-11-22 22:50:15,905 | INFO     | ready for new job
[2025-11-22 22:51:16] 2025-11-22 22:50:15,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:51:16] 2025-11-22 22:50:15,906 | INFO     | ***************************************
[2025-11-22 22:51:16] 2025-11-22 22:50:15,906 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:51:16] 2025-11-22 22:50:15,906 | INFO     | ***************************************
[2025-11-22 22:51:16] 2025-11-22 22:50:15,906 | INFO     | 
[2025-11-22 22:51:16] 2025-11-22 22:50:15,908 | INFO     | architecture information:
[2025-11-22 22:51:16] 2025-11-22 22:50:15,908 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:51:16] 2025-11-22 22:50:15,921 | INFO     | cat /etc/os-release:
[2025-11-22 22:51:16] NAME="CentOS Linux"
[2025-11-22 22:51:16] VERSION="7 (Core)"
[2025-11-22 22:51:16] ID="centos"
[2025-11-22 22:51:16] ID_LIKE="rhel fedora"
[2025-11-22 22:51:16] VERSION_ID="7"
[2025-11-22 22:51:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:51:16] ANSI_COLOR="0;31"
[2025-11-22 22:51:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:51:16] HOME_URL="https://www.centos.org/"
[2025-11-22 22:51:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:51:16] 
[2025-11-22 22:51:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:51:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:51:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:51:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:51:16] 
[2025-11-22 22:51:16] 2025-11-22 22:50:15,921 | INFO     | ***************************************
[2025-11-22 22:51:16] 2025-11-22 22:50:16,424 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-11-22 22:51:16] 2025-11-22 22:50:16,436 | INFO     | sufficient remaining disk space (962476376064 B)
[2025-11-22 22:51:16] 2025-11-22 22:50:16,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:51:16] 2025-11-22 22:50:16,437 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:51:16] 2025-11-22 22:50:16,437 | INFO     | update_server=False
[2025-11-22 22:51:16] 2025-11-22 22:50:16,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:51:16] 2025-11-22 22:50:16,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:51:16] 2025-11-22 22:50:16,738 | INFO     | all job control threads have been joined
[2025-11-22 22:51:16] 2025-11-22 22:50:16,774 | INFO     | all payload control threads have been joined
[2025-11-22 22:51:16] 2025-11-22 22:50:16,794 | INFO     | all data control threads have been joined
[2025-11-22 22:51:16] 2025-11-22 22:50:17,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:51:16] 2025-11-22 22:50:17,379 | INFO     | aborting loop
[2025-11-22 22:51:16] 2025-11-22 22:50:17,442 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,469 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,530 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,743 | INFO     | [job] control thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,779 | INFO     | [payload] control thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,800 | INFO     | [data] control thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:17,971 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,250 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,382 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,442 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,530 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,530 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:18,716 | INFO     | [job] validate thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:19,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:51:16] 2025-11-22 22:50:19,578 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:51:16] 2025-11-22 22:50:20,339 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:23,582 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:51:16] 2025-11-22 22:50:46,337 | INFO     | PID=1183 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 22:51:16] 2025-11-22 22:50:46,337 | INFO     | .. there are 3 such processes running
[2025-11-22 22:51:16] 2025-11-22 22:50:46,337 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:51:16] 2025-11-22 22:50:46,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:51:16] 2025-11-22 22:50:46,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:51:16] 2025-11-22 22:51:11,198 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:51:16] 2025-11-22 22:51:11,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139817504442176)>', '<ExcThread(monitor, started 139817107035904)>']
[2025-11-22 22:51:16] 2025-11-22 22:51:11,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:51:16] 2025-11-22 22:51:11,438 | INFO     | [monitor] control thread has ended
[2025-11-22 22:51:16] 2025-11-22 22:51:16,300 | INFO     | all workflow threads have been joined
[2025-11-22 22:51:16] 2025-11-22 22:51:16,300 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:51:16] 2025-11-22 22:51:16,301 | INFO     | traces error code: 0
[2025-11-22 22:51:16] 2025-11-22 22:51:16,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:51:16] 2025-11-22 22:51:16,380 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:51:16] 2025-11-22 22:51:16,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:51:16] 2025-11-22 22:51:16,383 [wrapper] pilotpid: 1183
[2025-11-22 22:51:16] 2025-11-22 22:51:16,385 [wrapper] Pilot exit status: 0
[2025-11-22 22:51:16] 2025-11-22 22:51:16,390 [wrapper] pandaids: 6891572747
[2025-11-22 22:51:16] 2025-11-22 22:51:16,421 [wrapper] cleanup supervisor_pilot  7945 1184
[2025-11-22 22:51:16] 2025-11-22 22:51:16,423 [wrapper] Test setup, not cleaning
[2025-11-22 22:51:16] 2025-11-22 22:51:16,424 [wrapper] apfmon messages muted
[2025-11-22 22:51:16] 2025-11-22 22:51:16,426 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:51:16] 2025-11-22 22:51:16,427 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:51:16]  *** Error codes and diagnostics ***
[2025-11-22 22:51:16]     "exeErrorCode": 0,
[2025-11-22 22:51:16]     "exeErrorDiag": "",
[2025-11-22 22:51:16]     "pilotErrorCode": 0,
[2025-11-22 22:51:16]     "pilotErrorDiag": "",
[2025-11-22 22:51:16]  *** Listing of results directory ***
[2025-11-22 22:51:16] total 1301908
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:24 pilot3.tar.gz
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:28 queuedata.json
[2025-11-22 22:51:16] -rwx------ 1 boinc boinc     36292 Nov 18 16:29 runpilot2-wrapper.sh
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc       100 Nov 22 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:51:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 19:11 run_atlas
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc       105 Nov 22 19:11 job.xml
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc     15120 Nov 22 19:11 start_atlas.sh
[2025-11-22 22:51:16] drwxrwx--x 2 boinc boinc        68 Nov 22 19:11 shared
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc    590104 Nov 22 19:11 input.tar.gz
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc      8919 Nov 22 19:11 init_data.xml
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc 410295481 Nov 22 19:11 EVNT.47493065._000352.pool.root.1
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc         0 Nov 22 19:11 boinc_setup_complete
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc         0 Nov 22 19:11 boinc_lockfile
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc      2773 Nov 22 19:11 pandaJob.out
[2025-11-22 22:51:16] -rw------- 1 boinc boinc    989784 Nov 22 19:11 agis_schedconf.cvmfs.json
[2025-11-22 22:51:16] drwx------ 5 boinc boinc      4096 Nov 22 19:11 pilot3
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc       532 Nov 22 22:34 boinc_task_state.xml
[2025-11-22 22:51:16] -rw------- 1 boinc boinc 911290069 Nov 22 22:49 HITS.47493068._003519.pool.root.1
[2025-11-22 22:51:16] -rw------- 1 boinc boinc      1040 Nov 22 22:49 memory_monitor_summary.json
[2025-11-22 22:51:16] -rw------- 1 boinc boinc   1526164 Nov 22 22:49 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:51:16] -rw------- 1 boinc boinc   1961544 Nov 22 22:49 log.47493068._003519.job.log.tgz.1
[2025-11-22 22:51:16] -rw------- 1 boinc boinc        95 Nov 22 22:49 pilot_heartbeat.json
[2025-11-22 22:51:16] -rw------- 1 boinc boinc      8627 Nov 22 22:50 heartbeat.json
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc        29 Nov 22 22:51 wrapper_checkpoint.txt
[2025-11-22 22:51:16] -rw------- 1 boinc boinc      4820 Nov 22 22:51 pilotlog.txt
[2025-11-22 22:51:16] -rw------- 1 boinc boinc   1868530 Nov 22 22:51 log.47493068._003519.job.log.1
[2025-11-22 22:51:16] -rw------- 1 boinc boinc       353 Nov 22 22:51 output.list
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc       620 Nov 22 22:51 runtime_log
[2025-11-22 22:51:16] -rw------- 1 boinc boinc   3850240 Nov 22 22:51 result.tar.gz
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc      8702 Nov 22 22:51 runtime_log.err
[2025-11-22 22:51:16] -rw------- 1 boinc boinc       663 Nov 22 22:51 reLODmOldf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmooFKDma3tS4m.diag
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc      8192 Nov 22 22:51 boinc_mmap_file
[2025-11-22 22:51:16] -rw-r--r-- 1 boinc boinc     22061 Nov 22 22:51 stderr.txt
[2025-11-22 22:51:16] HITS file was successfully produced:
[2025-11-22 22:51:16] -rw------- 1 boinc boinc 911290069 Nov 22 22:49 shared/HITS.pool.root.1
[2025-11-22 22:51:16]  *** Contents of shared directory: ***
[2025-11-22 22:51:16] total 1294968
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc     15120 Nov 22 19:11 start_atlas.sh
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc    590104 Nov 22 19:11 input.tar.gz
[2025-11-22 22:51:16] -rw-r--r-- 2 boinc boinc 410295481 Nov 22 19:11 ATLAS.root_0
[2025-11-22 22:51:16] -rw------- 1 boinc boinc 911290069 Nov 22 22:49 HITS.pool.root.1
[2025-11-22 22:51:16] -rw------- 1 boinc boinc   3850240 Nov 22 22:51 result.tar.gz
22:51:18 (45897): run_atlas exited; CPU time 114089.326758
22:51:18 (45897): called boinc_finish(0)

</stderr_txt>
]]>

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