Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:29:55 (27739): wrapper (7.7.26015): starting
22:29:55 (27739): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:29:55] Arguments: --nthreads 8
[2025-11-24 22:29:55] Threads: 8
[2025-11-24 22:29:55] Checking for CVMFS
[2025-11-24 22:29:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:29:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:29:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:29:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:29:58] 2.11.2.0 2048 169837 135964 153259 0 84 15313637 25165825 1060 130560 10 56569845 99.873 31338707 2221 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 22:29:58] CVMFS is ok
[2025-11-24 22:29:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:29:58] Checking for apptainer binary...
[2025-11-24 22:29:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:29:58] Running /usr/bin/apptainer --version
[2025-11-24 22:29:58] apptainer version 1.3.2-1.el7
[2025-11-24 22:29:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:30:09] cg-vwn398.simple-grid.lan
[2025-11-24 22:30:09] apptainer works
[2025-11-24 22:30:09] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:30:09] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:30:09] Starting ATLAS job with PandaID=6894290544
[2025-11-24 22:30:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:08:34]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:08:34] 2025-11-25 22:07:48,795 | INFO     | time since job start (88395s) is within the limit (172800.0s)
[2025-11-25 23:08:34] 2025-11-25 22:07:49,237 | INFO     | monitor loop #5958: job 0:6894290544 is in state 'finished'
[2025-11-25 23:08:34] 2025-11-25 22:07:49,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:08:34] 2025-11-25 22:07:50,001 | INFO     | PID=31459 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:08:34] 2025-11-25 22:07:50,001 | INFO     | .. there are 9 such processes running
[2025-11-25 23:08:34] 2025-11-25 22:07:51,002 | INFO     | time since job start (88398s) is within the limit (172800.0s)
[2025-11-25 23:08:34] 2025-11-25 22:07:51,742 | INFO     | monitor loop #5959: job 0:6894290544 is in state 'finished'
[2025-11-25 23:08:34] 2025-11-25 22:07:51,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:08:34] 2025-11-25 22:07:53,009 | INFO     | time since job start (88400s) is within the limit (172800.0s)
[2025-11-25 23:08:34] 2025-11-25 22:07:53,009 | INFO     | 88408s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 23:08:34] 2025-11-25 22:07:54,247 | INFO     | monitor loop #5960: job 0:6894290544 is in state 'finished'
[2025-11-25 23:08:34] 2025-11-25 22:07:54,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:08:34] 2025-11-25 22:07:55,018 | INFO     | time since job start (88402s) is within the limit (172800.0s)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,491 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:08:34] 2025-11-25 22:07:56,493 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 23:08:34] 2025-11-25 22:07:56,494 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6894290544/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,495 | INFO     | extracted standard info from prmon json
[2025-11-25 23:08:34] 2025-11-25 22:07:56,495 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:08:34] 2025-11-25 22:07:56,496 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:08:34] 2025-11-25 22:07:56,527 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:08:34] 2025-11-25 22:07:56,530 | INFO     | sum of square deviations: 923985870705.0626
[2025-11-25 23:08:34] 2025-11-25 22:07:56,611 | INFO     | sum of deviations: 4857395609445.598
[2025-11-25 23:08:34] 2025-11-25 22:07:56,612 | INFO     | mean x: 1764064502.2661572
[2025-11-25 23:08:34] 2025-11-25 22:07:56,612 | INFO     | mean y: 2851367.361362057
[2025-11-25 23:08:34] 2025-11-25 22:07:56,612 | INFO     | intersect: -9270839323.977818
[2025-11-25 23:08:34] 2025-11-25 22:07:56,614 | INFO     | chi2: 20.99306071949091
[2025-11-25 23:08:34] 2025-11-25 22:07:56,616 | INFO     | sum of square deviations: 914388413889.5193
[2025-11-25 23:08:34] 2025-11-25 22:07:56,670 | INFO     | sum of deviations: 5352729540480.782
[2025-11-25 23:08:34] 2025-11-25 22:07:56,670 | INFO     | mean x: 1764064349.7705717
[2025-11-25 23:08:34] 2025-11-25 22:07:56,670 | INFO     | mean y: 2859235.8716875874
[2025-11-25 23:08:34] 2025-11-25 22:07:56,671 | INFO     | intersect: -10323780092.55145
[2025-11-25 23:08:34] 2025-11-25 22:07:56,672 | INFO     | chi2: 17.692721411290208
[2025-11-25 23:08:34] 2025-11-25 22:07:56,672 | INFO     | current chi2=17.692721411290208 (change=15.721096377035279 %)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,673 | INFO     | right removable region: 1433
[2025-11-25 23:08:34] 2025-11-25 22:07:56,675 | INFO     | sum of square deviations: 914387302469.5194
[2025-11-25 23:08:34] 2025-11-25 22:07:56,728 | INFO     | sum of deviations: 4247595949717.346
[2025-11-25 23:08:34] 2025-11-25 22:07:56,728 | INFO     | mean x: 1764064654.7705717
[2025-11-25 23:08:34] 2025-11-25 22:07:56,728 | INFO     | mean y: 2861055.539051604
[2025-11-25 23:08:34] 2025-11-25 22:07:56,729 | INFO     | intersect: -8191734235.106714
[2025-11-25 23:08:34] 2025-11-25 22:07:56,730 | INFO     | chi2: 16.06649652150977
[2025-11-25 23:08:34] 2025-11-25 22:07:56,730 | INFO     | current chi2=16.06649652150977 (change=23.467584187984052 %)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,730 | INFO     | left removable region: 10
[2025-11-25 23:08:34] 2025-11-25 22:07:56,733 | INFO     | sum of square deviations: 893506238823.121
[2025-11-25 23:08:34] 2025-11-25 22:07:56,752 | INFO     | monitor loop #5961: job 0:6894290544 is in state 'finished'
[2025-11-25 23:08:34] 2025-11-25 22:07:56,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,789 | INFO     | sum of deviations: 4290728222119.963
[2025-11-25 23:08:34] 2025-11-25 22:07:56,790 | INFO     | mean x: 1764064624.2803936
[2025-11-25 23:08:34] 2025-11-25 22:07:56,790 | INFO     | mean y: 2879241.1278988053
[2025-11-25 23:08:34] 2025-11-25 22:07:56,790 | INFO     | intersect: -8468378753.6825
[2025-11-25 23:08:34] 2025-11-25 22:07:56,792 | INFO     | chi2: 8.332870806936965
[2025-11-25 23:08:34] 2025-11-25 22:07:56,792 | INFO     | current memory leak: 4.80 B/s (using 1423 data points, chi2=8.33)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,795 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | ..............................
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . Timing measurements:
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . get job = 0 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . initial setup = 8 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . payload setup = 193 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . stage-in = 0 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . payload execution = 87885 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . stage-out = 5 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | . log creation = 2 s
[2025-11-25 23:08:34] 2025-11-25 22:07:56,796 | INFO     | ..............................
[2025-11-25 23:08:34] 2025-11-25 22:07:57,025 | INFO     | time since job start (88404s) is within the limit (172800.0s)
[2025-11-25 23:08:34] 2025-11-25 22:07:57,283 | INFO     | 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,283 | INFO     | job summary report
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | --------------------------------------------------
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | PanDA job id: 6894290544
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | task id: 47533967
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | errors: (none)
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | pilot state: finished 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | transexitcode: 0
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | exeerrorcode: 0
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | exeerrordiag: 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | exitcode: 0
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | exitmsg: OK
[2025-11-25 23:08:34] 2025-11-25 22:07:57,284 | INFO     | cpuconsumptiontime: 339632 s
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | nevents: 1000
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | neventsw: 0
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | pid: 5560
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | pgrp: 5560
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | corecount: 8
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | event service: False
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | sizes: {0: 2284033, 1: 2284288, 12: 2284288, 23: 2284316, 34: 2284344, 44: 2284372, 55: 2284528, 66: 2284556, 76: 2284584, 87: 2284640, 98: 2284668, 100: 2285238, 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | --------------------------------------------------
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | 
[2025-11-25 23:08:34] 2025-11-25 22:07:57,285 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,905 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:08:34] 2025-11-25 22:07:57,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:08:34] 2025-11-25 22:07:57,907 | INFO     | job 6894290544 has completed (purged errors)
[2025-11-25 23:08:34] 2025-11-25 22:07:57,907 | INFO     | overall cleanup function is called
[2025-11-25 23:08:34] 2025-11-25 22:07:58,934 | INFO     | --- collectZombieJob: --- 10, [5560]
[2025-11-25 23:08:34] 2025-11-25 22:07:58,934 | INFO     | zombie collector waiting for pid 5560
[2025-11-25 23:08:34] 2025-11-25 22:07:58,935 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:08:34] 2025-11-25 22:07:58,935 | INFO     | collected zombie processes
[2025-11-25 23:08:34] 2025-11-25 22:07:58,935 | INFO     | will attempt to kill all subprocesses of pid=5560
[2025-11-25 23:08:34] 2025-11-25 22:07:59,052 | INFO     | process IDs to be killed: [5560] (in reverse order)
[2025-11-25 23:08:34] 2025-11-25 22:07:59,482 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:08:34] 2025-11-25 22:07:59,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:08:34] 2025-11-25 22:07:59,486 | INFO     | did not find any defunct processes belonging to 5560
[2025-11-25 23:08:34] 2025-11-25 22:07:59,489 | INFO     | did not find any defunct processes belonging to 5560
[2025-11-25 23:08:34] 2025-11-25 22:07:59,508 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:08:34] 2025-11-25 22:07:59,509 | INFO     | ready for new job
[2025-11-25 23:08:34] 2025-11-25 22:07:59,509 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:08:34] 2025-11-25 22:07:59,517 | INFO     | ***************************************
[2025-11-25 23:08:34] 2025-11-25 22:07:59,517 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:08:34] 2025-11-25 22:07:59,517 | INFO     | ***************************************
[2025-11-25 23:08:34] 2025-11-25 22:07:59,517 | INFO     | 
[2025-11-25 23:08:34] 2025-11-25 22:07:59,518 | INFO     | pilot is running in a VM
[2025-11-25 23:08:34] 2025-11-25 22:07:59,518 | INFO     | architecture information:
[2025-11-25 23:08:34] 2025-11-25 22:07:59,526 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:08:34] 2025-11-25 22:07:59,665 | INFO     | cat /etc/os-release:
[2025-11-25 23:08:34] NAME="CentOS Linux"
[2025-11-25 23:08:34] VERSION="7 (Core)"
[2025-11-25 23:08:34] ID="centos"
[2025-11-25 23:08:34] ID_LIKE="rhel fedora"
[2025-11-25 23:08:34] VERSION_ID="7"
[2025-11-25 23:08:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:08:34] ANSI_COLOR="0;31"
[2025-11-25 23:08:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:08:34] HOME_URL="https://www.centos.org/"
[2025-11-25 23:08:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:08:34] 
[2025-11-25 23:08:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:08:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:08:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:08:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:08:34] 
[2025-11-25 23:08:34] 2025-11-25 22:07:59,665 | INFO     | ***************************************
[2025-11-25 23:08:34] 2025-11-25 22:08:00,168 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-25 23:08:34] 2025-11-25 22:08:00,304 | INFO     | sufficient remaining disk space (495224619008 B)
[2025-11-25 23:08:34] 2025-11-25 22:08:00,305 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:08:34] 2025-11-25 22:08:00,305 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:08:34] 2025-11-25 22:08:00,305 | INFO     | update_server=False
[2025-11-25 23:08:34] 2025-11-25 22:08:00,305 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:08:34] 2025-11-25 22:08:00,308 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:08:34] 2025-11-25 22:08:00,308 | INFO     | aborting loop
[2025-11-25 23:08:34] 2025-11-25 22:08:00,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:08:34] 2025-11-25 22:08:01,310 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:01,313 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:01,317 | INFO     | all payload control threads have been joined
[2025-11-25 23:08:34] 2025-11-25 22:08:01,370 | INFO     | all data control threads have been joined
[2025-11-25 23:08:34] 2025-11-25 22:08:01,545 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:01,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:01,867 | INFO     | all job control threads have been joined
[2025-11-25 23:08:34] 2025-11-25 22:08:01,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:08:34] 2025-11-25 22:08:01,964 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:01,967 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,323 | INFO     | [payload] control thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,376 | INFO     | [data] control thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,460 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,509 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,511 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,521 | INFO     | [job] validate thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,550 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,873 | INFO     | [job] control thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:02,935 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:03,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:08:34] 2025-11-25 22:08:07,075 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:08:34] 2025-11-25 22:08:07,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:08:34] 2025-11-25 22:08:08,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805643085632)>', '<ExcThread(monitor, started 139805052618496)>']
[2025-11-25 23:08:34] 2025-11-25 22:08:13,520 | INFO     | all workflow threads have been joined
[2025-11-25 23:08:34] 2025-11-25 22:08:13,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:08:34] 2025-11-25 22:08:13,521 | INFO     | traces error code: 0
[2025-11-25 23:08:34] 2025-11-25 22:08:13,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:08:34] 2025-11-25 22:08:30,250 | INFO     | PID=31459 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 23:08:34] 2025-11-25 22:08:30,250 | INFO     | .. there are 9 such processes running
[2025-11-25 23:08:34] 2025-11-25 22:08:30,251 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:08:34] 2025-11-25 22:08:30,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:08:34] 2025-11-25 22:08:30,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:08:34] 2025-11-25 22:08:30,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:08:34] 2025-11-25 22:08:30,251 | INFO     | [monitor] control thread has ended
[2025-11-25 23:08:34] 2025-11-25 22:08:30,588 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:08:34] 2025-11-25 22:08:30,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:08:34] 2025-11-25 22:08:30,734 [wrapper] pilotpid: 31459
[2025-11-25 23:08:34] 2025-11-25 22:08:30,834 [wrapper] Pilot exit status: 0
[2025-11-25 23:08:34] 2025-11-25 22:08:31,190 [wrapper] pandaids: 6894290544
[2025-11-25 23:08:34] 2025-11-25 22:08:31,695 [wrapper] cleanup supervisor_pilot 28447 31460
[2025-11-25 23:08:34] 2025-11-25 22:08:31,779 [wrapper] Test setup, not cleaning
[2025-11-25 23:08:34] 2025-11-25 22:08:31,861 [wrapper] apfmon messages muted
[2025-11-25 23:08:34] 2025-11-25 22:08:31,971 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:08:34] 2025-11-25 22:08:32,079 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:08:34]  *** Error codes and diagnostics ***
[2025-11-25 23:08:34]     "exeErrorCode": 0,
[2025-11-25 23:08:34]     "exeErrorDiag": "",
[2025-11-25 23:08:34]     "pilotErrorCode": 0,
[2025-11-25 23:08:34]     "pilotErrorDiag": "",
[2025-11-25 23:08:34]  *** Listing of results directory ***
[2025-11-25 23:08:34] total 1332720
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:46 queuedata.json
[2025-11-25 23:08:34] -rwx------. 1 boinc boinc     36292 Nov 21 12:46 runpilot2-wrapper.sh
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc       100 Nov 24 22:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:08:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 22:29 run_atlas
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc       105 Nov 24 22:29 job.xml
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc 409556169 Nov 24 22:29 EVNT.47493127._002424.pool.root.1
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:29 start_atlas.sh
[2025-11-25 23:08:34] drwxrwx--x. 2 boinc boinc        68 Nov 24 22:29 shared
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc    590105 Nov 24 22:29 input.tar.gz
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc      6392 Nov 24 22:29 init_data.xml
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc         0 Nov 24 22:29 boinc_lockfile
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc      2785 Nov 24 22:30 pandaJob.out
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc    991801 Nov 24 22:34 agis_schedconf.cvmfs.json
[2025-11-25 23:08:34] drwx------. 5 boinc boinc      4096 Nov 24 22:34 pilot3
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc       533 Nov 25 22:50 boinc_task_state.xml
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc 922555293 Nov 25 23:04 HITS.47533967._003952.pool.root.1
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc      1033 Nov 25 23:06 memory_monitor_summary.json
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc   1516240 Nov 25 23:06 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc   2533800 Nov 25 23:06 log.47533967._003952.job.log.tgz.1
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc        95 Nov 25 23:07 pilot_heartbeat.json
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc      7947 Nov 25 23:07 heartbeat.json
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc       820 Nov 25 23:08 pilotlog.txt
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc  11812083 Nov 25 23:08 log.47533967._003952.job.log.1
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc      8192 Nov 25 23:08 boinc_mmap_file
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc        29 Nov 25 23:08 wrapper_checkpoint.txt
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc       353 Nov 25 23:08 output.list
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc       620 Nov 25 23:08 runtime_log
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc  14366720 Nov 25 23:08 result.tar.gz
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc      8833 Nov 25 23:08 runtime_log.err
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc       662 Nov 25 23:08 LQ2LDmvleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqNJKDmyNUW4m.diag
[2025-11-25 23:08:34] -rw-r--r--. 1 boinc boinc     21449 Nov 25 23:08 stderr.txt
[2025-11-25 23:08:34] HITS file was successfully produced:
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc 922555293 Nov 25 23:04 shared/HITS.pool.root.1
[2025-11-25 23:08:34]  *** Contents of shared directory: ***
[2025-11-25 23:08:34] total 1315524
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc 409556169 Nov 24 22:29 ATLAS.root_0
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc     15847 Nov 24 22:29 start_atlas.sh
[2025-11-25 23:08:34] -rw-r--r--. 2 boinc boinc    590105 Nov 24 22:29 input.tar.gz
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc 922555293 Nov 25 23:04 HITS.pool.root.1
[2025-11-25 23:08:34] -rw-------. 1 boinc boinc  14366720 Nov 25 23:08 result.tar.gz
23:08:36 (27739): run_atlas exited; CPU time 340065.484822
23:08:36 (27739): called boinc_finish(0)

</stderr_txt>
]]>

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