Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:47:25 (6416): wrapper (7.7.26015): starting
05:47:25 (6416): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 05:47:25] Arguments: --nthreads 8
[2025-11-25 05:47:25] Threads: 8
[2025-11-25 05:47:25] Checking for CVMFS
[2025-11-25 05:47:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:47:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:47:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:47:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:47:28] 2.11.2.0 31313 283295 141416 153270 0 85 18158413 25165825 4632 130560 9 127915630 99.859 84669637 2961 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 05:47:28] CVMFS is ok
[2025-11-25 05:47:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:47:28] Checking for apptainer binary...
[2025-11-25 05:47:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:47:28] Running /usr/bin/apptainer --version
[2025-11-25 05:47:28] apptainer version 1.3.2-1.el7
[2025-11-25 05:47:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:47:33] cg-vwn451.simple-grid.lan
[2025-11-25 05:47:33] apptainer works
[2025-11-25 05:47:33] Set ATHENA_PROC_NUMBER=8
[2025-11-25 05:47:33] Set ATHENA_CORE_NUMBER=8
[2025-11-25 05:47:33] Starting ATLAS job with PandaID=6894265638
[2025-11-25 05:47:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:56:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:56:53] 2025-11-26 05:55:55,029 | INFO     | monitor loop #6049: job 0:6894265638 is in state 'finished'
[2025-11-26 06:56:53] 2025-11-26 05:55:55,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:56:53] 2025-11-26 05:55:56,079 | INFO     | time since job start (90229s) is within the limit (172800.0s)
[2025-11-26 06:56:53] 2025-11-26 05:55:57,537 | INFO     | monitor loop #6050: job 0:6894265638 is in state 'finished'
[2025-11-26 06:56:53] 2025-11-26 05:55:57,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:56:53] 2025-11-26 05:55:58,086 | INFO     | time since job start (90231s) is within the limit (172800.0s)
[2025-11-26 06:56:53] 2025-11-26 05:55:59,272 | INFO     | PID=10204 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:56:53] 2025-11-26 05:55:59,272 | INFO     | .. there are 9 such processes running
[2025-11-26 06:56:53] 2025-11-26 05:56:00,050 | INFO     | monitor loop #6051: job 0:6894265638 is in state 'finished'
[2025-11-26 06:56:53] 2025-11-26 05:56:00,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:56:53] 2025-11-26 05:56:00,275 | INFO     | time since job start (90233s) is within the limit (172800.0s)
[2025-11-26 06:56:53] 2025-11-26 05:56:02,282 | INFO     | time since job start (90235s) is within the limit (172800.0s)
[2025-11-26 06:56:53] 2025-11-26 05:56:02,555 | INFO     | monitor loop #6052: job 0:6894265638 is in state 'finished'
[2025-11-26 06:56:53] 2025-11-26 05:56:02,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,270 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:56:53] 2025-11-26 05:56:03,271 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 06:56:53] 2025-11-26 05:56:03,273 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6894265638/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,273 | INFO     | extracted standard info from prmon json
[2025-11-26 06:56:53] 2025-11-26 05:56:03,273 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:56:53] 2025-11-26 05:56:03,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:56:53] 2025-11-26 05:56:03,305 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:56:53] 2025-11-26 05:56:03,307 | INFO     | sum of square deviations: 984981376711.7113
[2025-11-26 06:56:53] 2025-11-26 05:56:03,410 | INFO     | sum of deviations: 4455774901315.562
[2025-11-26 06:56:53] 2025-11-26 05:56:03,415 | INFO     | mean x: 1764091635.7605443
[2025-11-26 06:56:53] 2025-11-26 05:56:03,415 | INFO     | mean y: 2839214.5925170067
[2025-11-26 06:56:53] 2025-11-26 05:56:03,415 | INFO     | intersect: -7977408351.593865
[2025-11-26 06:56:53] 2025-11-26 05:56:03,417 | INFO     | chi2: 23.712927391315194
[2025-11-26 06:56:53] 2025-11-26 05:56:03,419 | INFO     | sum of square deviations: 974965205221.239
[2025-11-26 06:56:53] 2025-11-26 05:56:03,482 | INFO     | sum of deviations: 4941855041608.928
[2025-11-26 06:56:53] 2025-11-26 05:56:03,482 | INFO     | mean x: 1764091483.2648463
[2025-11-26 06:56:53] 2025-11-26 05:56:03,482 | INFO     | mean y: 2846614.371331058
[2025-11-26 06:56:53] 2025-11-26 05:56:03,482 | INFO     | intersect: -8938892376.666294
[2025-11-26 06:56:53] 2025-11-26 05:56:03,484 | INFO     | chi2: 20.553307022463652
[2025-11-26 06:56:53] 2025-11-26 05:56:03,484 | INFO     | current chi2=20.553307022463652 (change=13.324463558256184 %)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,484 | INFO     | right removable region: 1464
[2025-11-26 06:56:53] 2025-11-26 05:56:03,486 | INFO     | sum of square deviations: 974964074891.2379
[2025-11-26 06:56:53] 2025-11-26 05:56:03,543 | INFO     | sum of deviations: 3834602858177.7417
[2025-11-26 06:56:53] 2025-11-26 05:56:03,543 | INFO     | mean x: 1764091788.2648463
[2025-11-26 06:56:53] 2025-11-26 05:56:03,543 | INFO     | mean y: 2848670.9310580203
[2025-11-26 06:56:53] 2025-11-26 05:56:03,543 | INFO     | intersect: -6935449454.692583
[2025-11-26 06:56:53] 2025-11-26 05:56:03,545 | INFO     | chi2: 18.841965609815187
[2025-11-26 06:56:53] 2025-11-26 05:56:03,545 | INFO     | current chi2=18.841965609815187 (change=20.54137686637537 %)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,545 | INFO     | left removable region: 10
[2025-11-26 06:56:53] 2025-11-26 05:56:03,547 | INFO     | sum of square deviations: 953166895494.0085
[2025-11-26 06:56:53] 2025-11-26 05:56:03,605 | INFO     | sum of deviations: 3874664388587.086
[2025-11-26 06:56:53] 2025-11-26 05:56:03,605 | INFO     | mean x: 1764091757.7744155
[2025-11-26 06:56:53] 2025-11-26 05:56:03,606 | INFO     | mean y: 2866350.786795048
[2025-11-26 06:56:53] 2025-11-26 05:56:03,606 | INFO     | intersect: -7168242449.111185
[2025-11-26 06:56:53] 2025-11-26 05:56:03,607 | INFO     | chi2: 11.110408952615545
[2025-11-26 06:56:53] 2025-11-26 05:56:03,608 | INFO     | current memory leak: 4.07 B/s (using 1454 data points, chi2=11.11)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | ..............................
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . Timing measurements:
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . get job = 0 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . initial setup = 3 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . payload setup = 149 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . stage-in = 0 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . payload execution = 89793 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . stage-out = 10 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,609 | INFO     | . log creation = 2 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,610 | INFO     | ..............................
[2025-11-26 06:56:53] 2025-11-26 05:56:03,713 | INFO     | 
[2025-11-26 06:56:53] 2025-11-26 05:56:03,713 | INFO     | job summary report
[2025-11-26 06:56:53] 2025-11-26 05:56:03,713 | INFO     | --------------------------------------------------
[2025-11-26 06:56:53] 2025-11-26 05:56:03,713 | INFO     | PanDA job id: 6894265638
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | task id: 47533967
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | errors: (none)
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | pilot state: finished 
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | transexitcode: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | exeerrorcode: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | exeerrordiag: 
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | exitcode: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | exitmsg: OK
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | cpuconsumptiontime: 336842 s
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | nevents: 1000
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | neventsw: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:03,714 | INFO     | pid: 16759
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | pgrp: 16759
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | corecount: 8
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | event service: False
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | sizes: {0: 2283431, 1: 2284117, 2: 2284316, 3: 2284316, 13: 2284344, 24: 2284400, 35: 2284556, 46: 2284584, 56: 2284612, 67: 2284640, 78: 2284668, 89: 2285004, 97:
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | --------------------------------------------------
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | 
[2025-11-26 06:56:53] 2025-11-26 05:56:03,715 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-26 06:56:53] 2025-11-26 05:56:04,182 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:56:53] 2025-11-26 05:56:04,184 | INFO     | job 6894265638 has completed (purged errors)
[2025-11-26 06:56:53] 2025-11-26 05:56:04,185 | INFO     | overall cleanup function is called
[2025-11-26 06:56:53] 2025-11-26 05:56:05,203 | INFO     | --- collectZombieJob: --- 10, [16759]
[2025-11-26 06:56:53] 2025-11-26 05:56:05,203 | INFO     | zombie collector waiting for pid 16759
[2025-11-26 06:56:53] 2025-11-26 05:56:05,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:56:53] 2025-11-26 05:56:05,203 | INFO     | collected zombie processes
[2025-11-26 06:56:53] 2025-11-26 05:56:05,203 | INFO     | will attempt to kill all subprocesses of pid=16759
[2025-11-26 06:56:53] 2025-11-26 05:56:05,317 | INFO     | process IDs to be killed: [16759] (in reverse order)
[2025-11-26 06:56:53] 2025-11-26 05:56:06,161 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:56:53] 2025-11-26 05:56:06,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:56:53] 2025-11-26 05:56:06,165 | INFO     | did not find any defunct processes belonging to 16759
[2025-11-26 06:56:53] 2025-11-26 05:56:06,167 | INFO     | did not find any defunct processes belonging to 16759
[2025-11-26 06:56:53] 2025-11-26 05:56:06,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:56:53] 2025-11-26 05:56:06,231 | INFO     | ready for new job
[2025-11-26 06:56:53] 2025-11-26 05:56:06,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:56:53] 2025-11-26 05:56:06,237 | INFO     | ***************************************
[2025-11-26 06:56:53] 2025-11-26 05:56:06,237 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:56:53] 2025-11-26 05:56:06,237 | INFO     | ***************************************
[2025-11-26 06:56:53] 2025-11-26 05:56:06,237 | INFO     | 
[2025-11-26 06:56:53] 2025-11-26 05:56:06,238 | INFO     | pilot is running in a VM
[2025-11-26 06:56:53] 2025-11-26 05:56:06,238 | INFO     | architecture information:
[2025-11-26 06:56:53] 2025-11-26 05:56:06,246 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:56:53] 2025-11-26 05:56:06,530 | INFO     | cat /etc/os-release:
[2025-11-26 06:56:53] NAME="CentOS Linux"
[2025-11-26 06:56:53] VERSION="7 (Core)"
[2025-11-26 06:56:53] ID="centos"
[2025-11-26 06:56:53] ID_LIKE="rhel fedora"
[2025-11-26 06:56:53] VERSION_ID="7"
[2025-11-26 06:56:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:56:53] ANSI_COLOR="0;31"
[2025-11-26 06:56:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:56:53] HOME_URL="https://www.centos.org/"
[2025-11-26 06:56:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:56:53] 
[2025-11-26 06:56:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:56:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:56:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:56:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:56:53] 
[2025-11-26 06:56:53] 2025-11-26 05:56:06,531 | INFO     | ***************************************
[2025-11-26 06:56:53] 2025-11-26 05:56:07,034 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-26 06:56:53] 2025-11-26 05:56:07,208 | INFO     | sufficient remaining disk space (495524511744 B)
[2025-11-26 06:56:53] 2025-11-26 05:56:07,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:56:53] 2025-11-26 05:56:07,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:56:53] 2025-11-26 05:56:07,209 | INFO     | update_server=False
[2025-11-26 06:56:53] 2025-11-26 05:56:07,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:56:53] 2025-11-26 05:56:07,215 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:56:53] 2025-11-26 05:56:07,452 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:56:53] 2025-11-26 05:56:07,572 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 06:56:53] 2025-11-26 05:56:07,572 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 06:56:53] 2025-11-26 05:56:07,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:56:53] 2025-11-26 05:56:07,572 | INFO     | will abort loop
[2025-11-26 06:56:53] 2025-11-26 05:56:07,885 | INFO     | all data control threads have been joined
[2025-11-26 06:56:53] 2025-11-26 05:56:08,063 | INFO     | all payload control threads have been joined
[2025-11-26 06:56:53] 2025-11-26 05:56:08,079 | INFO     | all job control threads have been joined
[2025-11-26 06:56:53] 2025-11-26 05:56:08,215 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,337 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,349 | INFO     | [job] validate thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,578 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:56:53] 2025-11-26 05:56:08,891 | INFO     | [data] control thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,967 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:08,997 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,069 | INFO     | [payload] control thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,085 | INFO     | [job] control thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,222 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,444 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,471 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,690 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:09,733 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:11,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:56:53] 2025-11-26 05:56:35,544 | INFO     | PID=10204 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 06:56:53] 2025-11-26 05:56:35,544 | INFO     | .. there are 9 such processes running
[2025-11-26 06:56:53] 2025-11-26 05:56:35,544 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:56:53] 2025-11-26 05:56:35,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:56:53] 2025-11-26 05:56:35,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:56:53] 2025-11-26 05:56:43,557 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:56:53] 2025-11-26 05:56:44,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628974434112)>', '<ExcThread(monitor, started 139627709069056)>']
[2025-11-26 06:56:53] 2025-11-26 05:56:44,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:56:53] 2025-11-26 05:56:44,601 | INFO     | [monitor] control thread has ended
[2025-11-26 06:56:53] 2025-11-26 05:56:49,268 | INFO     | all workflow threads have been joined
[2025-11-26 06:56:53] 2025-11-26 05:56:49,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:56:53] 2025-11-26 05:56:49,268 | INFO     | traces error code: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:49,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:56:53] 2025-11-26 05:56:49,666 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:56:53] 2025-11-26 05:56:49,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:56:53] 2025-11-26 05:56:49,846 [wrapper] pilotpid: 10204
[2025-11-26 06:56:53] 2025-11-26 05:56:49,935 [wrapper] Pilot exit status: 0
[2025-11-26 06:56:53] 2025-11-26 05:56:50,316 [wrapper] pandaids: 6894265638
[2025-11-26 06:56:53] 2025-11-26 05:56:51,108 [wrapper] cleanup supervisor_pilot 27481 10205
[2025-11-26 06:56:53] 2025-11-26 05:56:51,226 [wrapper] Test setup, not cleaning
[2025-11-26 06:56:53] 2025-11-26 05:56:51,338 [wrapper] apfmon messages muted
[2025-11-26 06:56:53] 2025-11-26 05:56:51,419 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:56:53] 2025-11-26 05:56:51,490 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:56:53]  *** Error codes and diagnostics ***
[2025-11-26 06:56:53]     "exeErrorCode": 0,
[2025-11-26 06:56:53]     "exeErrorDiag": "",
[2025-11-26 06:56:53]     "pilotErrorCode": 0,
[2025-11-26 06:56:53]     "pilotErrorDiag": "",
[2025-11-26 06:56:53]  *** Listing of results directory ***
[2025-11-26 06:56:53] total 1329312
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:56 pilot3.tar.gz
[2025-11-26 06:56:53] -rwx------. 1 boinc boinc     36292 Nov 21 06:01 runpilot2-wrapper.sh
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc      5112 Nov 21 06:01 queuedata.json
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc       100 Nov 25 05:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:56:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 05:47 run_atlas
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc       105 Nov 25 05:47 job.xml
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc      6393 Nov 25 05:47 init_data.xml
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc 409434092 Nov 25 05:47 EVNT.47493127._002215.pool.root.1
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 05:47 start_atlas.sh
[2025-11-26 06:56:53] drwxrwx--x. 2 boinc boinc        68 Nov 25 05:47 shared
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc    590100 Nov 25 05:47 input.tar.gz
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc         0 Nov 25 05:47 boinc_lockfile
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc      2785 Nov 25 05:47 pandaJob.out
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc    991801 Nov 25 05:52 agis_schedconf.cvmfs.json
[2025-11-26 06:56:53] drwx------. 5 boinc boinc      4096 Nov 25 05:52 pilot3
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc       533 Nov 26 06:37 boinc_task_state.xml
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc 918651534 Nov 26 06:53 HITS.47533967._001868.pool.root.1
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc      1030 Nov 26 06:54 memory_monitor_summary.json
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc   1516240 Nov 26 06:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc   2550396 Nov 26 06:54 log.47533967._001868.job.log.tgz.1
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc        95 Nov 26 06:55 pilot_heartbeat.json
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc      7948 Nov 26 06:56 heartbeat.json
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc      8192 Nov 26 06:56 boinc_mmap_file
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc        29 Nov 26 06:56 wrapper_checkpoint.txt
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc      5071 Nov 26 06:56 pilotlog.txt
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc  12059258 Nov 26 06:56 log.47533967._001868.job.log.1
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc       353 Nov 26 06:56 output.list
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc       620 Nov 26 06:56 runtime_log
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc  14632960 Nov 26 06:56 result.tar.gz
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc       662 Nov 26 06:56 tBLNDmQSYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmP4IKDmEUSaDo.diag
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc      8833 Nov 26 06:56 runtime_log.err
[2025-11-26 06:56:53] -rw-r--r--. 1 boinc boinc     21495 Nov 26 06:56 stderr.txt
[2025-11-26 06:56:53] HITS file was successfully produced:
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc 918651534 Nov 26 06:53 shared/HITS.pool.root.1
[2025-11-26 06:56:53]  *** Contents of shared directory: ***
[2025-11-26 06:56:53] total 1311852
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc 409434092 Nov 25 05:47 ATLAS.root_0
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 05:47 start_atlas.sh
[2025-11-26 06:56:53] -rw-r--r--. 2 boinc boinc    590100 Nov 25 05:47 input.tar.gz
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc 918651534 Nov 26 06:53 HITS.pool.root.1
[2025-11-26 06:56:53] -rw-------. 1 boinc boinc  14632960 Nov 26 06:56 result.tar.gz
06:56:55 (6416): run_atlas exited; CPU time 337368.822951
06:56:55 (6416): called boinc_finish(0)

</stderr_txt>
]]>

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