Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:36:20 (847215): wrapper (7.7.26015): starting
03:36:20 (847215): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 03:36:20] Arguments: --nthreads 3
[2025-11-26 03:36:20] Threads: 3
[2025-11-26 03:36:20] Checking for CVMFS
[2025-11-26 03:36:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:36:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:36:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:36:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:36:20] 2.9.2.0 3626579 10539 90872 153305 1 81 8813733 36864000 0 130560 0 3850046 99.856 637551 8936 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 03:36:20] CVMFS is ok
[2025-11-26 03:36:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:36:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:36:20] Further information can be found at the LHC@home message board.
[2025-11-26 03:36:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:36:20] Checking for apptainer binary...
[2025-11-26 03:36:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:36:20] Running /usr/bin/apptainer --version
[2025-11-26 03:36:20] apptainer version 1.4.1-1.1
[2025-11-26 03:36:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:36:20] thA332
[2025-11-26 03:36:20] apptainer works
[2025-11-26 03:36:20] Set ATHENA_PROC_NUMBER=3
[2025-11-26 03:36:20] Set ATHENA_CORE_NUMBER=3
[2025-11-26 03:36:20] Starting ATLAS job with PandaID=6894257883
[2025-11-26 03:36:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:54:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:54:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:54:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:54:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:54:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:54:04] 
[2025-11-26 11:54:04] 2025-11-26 10:53:18,022 | INFO     | ***************************************
[2025-11-26 11:54:04] 2025-11-26 10:53:18,525 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 11:54:04] 2025-11-26 10:53:18,537 | INFO     | sufficient remaining disk space (247409410048 B)
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | INFO     | update_server=False
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:54:04] 2025-11-26 10:53:18,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:54:04] 2025-11-26 10:53:18,553 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 11:54:04] 2025-11-26 10:53:18,553 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 11:54:04] 2025-11-26 10:53:18,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:54:04] 2025-11-26 10:53:18,553 | INFO     | will abort loop
[2025-11-26 11:54:04] 2025-11-26 10:53:18,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:54:04] 2025-11-26 10:53:18,719 | INFO     | all job control threads have been joined
[2025-11-26 11:54:04] 2025-11-26 10:53:18,735 | INFO     | all payload control threads have been joined
[2025-11-26 11:54:04] 2025-11-26 10:53:19,158 | INFO     | all data control threads have been joined
[2025-11-26 11:54:04] 2025-11-26 10:53:19,543 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,544 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,559 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,725 | INFO     | [job] control thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,740 | INFO     | [payload] control thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:19,905 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,016 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,163 | INFO     | [data] control thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,426 | INFO     | [job] validate thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,468 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,540 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,625 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,646 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:20,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:22,574 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:54:04] 2025-11-26 10:53:49,356 | INFO     | PID=850937 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:54:04] 2025-11-26 10:53:49,357 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:54:04] 2025-11-26 10:53:49,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:54:04] 2025-11-26 10:53:49,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:54:04] 2025-11-26 10:53:59,583 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:54:04] 2025-11-26 10:53:59,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796925523776)>', '<ExcThread(monitor, started 139796571723520)>']
[2025-11-26 11:54:04] 2025-11-26 10:54:00,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:54:04] 2025-11-26 10:54:00,410 | INFO     | [monitor] control thread has ended
[2025-11-26 11:54:04] 2025-11-26 10:54:04,786 | INFO     | all workflow threads have been joined
[2025-11-26 11:54:04] 2025-11-26 10:54:04,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:54:04] 2025-11-26 10:54:04,786 | INFO     | traces error code: 0
[2025-11-26 11:54:04] 2025-11-26 10:54:04,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:54:04] 2025-11-26 10:54:04,838 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:54:04] 2025-11-26 10:54:04,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:54:04] 2025-11-26 10:54:04,842 [wrapper] pilotpid: 850937
[2025-11-26 11:54:04] 2025-11-26 10:54:04,845 [wrapper] Pilot exit status: 0
[2025-11-26 11:54:04] 2025-11-26 10:54:04,852 [wrapper] pandaids: 6894257883
[2025-11-26 11:54:04] 2025-11-26 10:54:04,869 [wrapper] cleanup supervisor_pilot  909778 850938
[2025-11-26 11:54:04] 2025-11-26 10:54:04,871 [wrapper] Test setup, not cleaning
[2025-11-26 11:54:04] 2025-11-26 10:54:04,873 [wrapper] apfmon messages muted
[2025-11-26 11:54:04] 2025-11-26 10:54:04,875 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:54:04] 2025-11-26 10:54:04,878 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:54:04]  *** Error codes and diagnostics ***
[2025-11-26 11:54:04]     "exeErrorCode": 0,
[2025-11-26 11:54:04]     "exeErrorDiag": "",
[2025-11-26 11:54:04]     "pilotErrorCode": 0,
[2025-11-26 11:54:04]     "pilotErrorDiag": "",
[2025-11-26 11:54:04]  *** Listing of results directory ***
[2025-11-26 11:54:04] total 1307096
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-26 11:54:04] -rwx------ 1 boinc boinc     36292 Nov 21 04:34 runpilot2-wrapper.sh
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      5112 Nov 21 04:34 queuedata.json
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc       100 Nov 26 03:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:54:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 03:36 run_atlas
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc       105 Nov 26 03:36 job.xml
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc 410153210 Nov 26 03:36 EVNT.47493127._002165.pool.root.1
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc    590100 Nov 26 03:36 input.tar.gz
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:36 start_atlas.sh
[2025-11-26 11:54:04] drwxrwx--x 2 boinc boinc      4096 Nov 26 03:36 shared
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:36 boinc_setup_complete
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      6440 Nov 26 03:36 init_data.xml
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:36 boinc_lockfile
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      2785 Nov 26 03:36 pandaJob.out
[2025-11-26 11:54:04] -rw------- 1 boinc boinc    991877 Nov 26 03:36 agis_schedconf.cvmfs.json
[2025-11-26 11:54:04] drwx------ 5 boinc boinc      4096 Nov 26 03:36 pilot3
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc       531 Nov 26 11:49 boinc_task_state.xml
[2025-11-26 11:54:04] -rw------- 1 boinc boinc 913660039 Nov 26 11:52 HITS.47533967._001365.pool.root.1
[2025-11-26 11:54:04] -rw------- 1 boinc boinc        95 Nov 26 11:52 pilot_heartbeat.json
[2025-11-26 11:54:04] -rw------- 1 boinc boinc      1023 Nov 26 11:53 memory_monitor_summary.json
[2025-11-26 11:54:04] -rw------- 1 boinc boinc   1516240 Nov 26 11:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:54:04] -rw------- 1 boinc boinc   1182910 Nov 26 11:53 log.47533967._001365.job.log.tgz.1
[2025-11-26 11:54:04] -rw------- 1 boinc boinc      8564 Nov 26 11:53 heartbeat.json
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc        28 Nov 26 11:53 wrapper_checkpoint.txt
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      8192 Nov 26 11:53 boinc_mmap_file
[2025-11-26 11:54:04] -rw------- 1 boinc boinc      4937 Nov 26 11:54 pilotlog.txt
[2025-11-26 11:54:04] -rw------- 1 boinc boinc   4188860 Nov 26 11:54 log.47533967._001365.job.log.1
[2025-11-26 11:54:04] -rw------- 1 boinc boinc       353 Nov 26 11:54 output.list
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc       620 Nov 26 11:54 runtime_log
[2025-11-26 11:54:04] -rw------- 1 boinc boinc   5396480 Nov 26 11:54 result.tar.gz
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      8898 Nov 26 11:54 runtime_log.err
[2025-11-26 11:54:04] -rw------- 1 boinc boinc       665 Nov 26 11:54 LvpKDmM6Wg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCyIKDm5JdLEo.diag
[2025-11-26 11:54:04] -rw-r--r-- 1 boinc boinc      8437 Nov 26 11:54 stderr.txt
[2025-11-26 11:54:04] HITS file was successfully produced:
[2025-11-26 11:54:04] -rw------- 1 boinc boinc 913660039 Nov 26 11:52 shared/HITS.pool.root.1
[2025-11-26 11:54:04]  *** Contents of shared directory: ***
[2025-11-26 11:54:04] total 1298664
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc 410153210 Nov 26 03:36 ATLAS.root_0
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc    590100 Nov 26 03:36 input.tar.gz
[2025-11-26 11:54:04] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:36 start_atlas.sh
[2025-11-26 11:54:04] -rw------- 1 boinc boinc 913660039 Nov 26 11:52 HITS.pool.root.1
[2025-11-26 11:54:04] -rw------- 1 boinc boinc   5396480 Nov 26 11:54 result.tar.gz
11:54:06 (847215): run_atlas exited; CPU time 88148.377825
11:54:06 (847215): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN