Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:39:10 (29961): wrapper (7.7.26015): starting
01:39:10 (29961): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:39:10] Arguments: --nthreads 8
[2025-11-22 01:39:10] Threads: 8
[2025-11-22 01:39:10] Checking for CVMFS
[2025-11-22 01:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:39:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:39:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:39:10] 2.11.2.0 8318 111640 131756 153162 2 90 11991985 18432000 1706 130560 0 78754296 99.972 4905216 31639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 01:39:10] CVMFS is ok
[2025-11-22 01:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:39:10] Further information can be found at the LHC@home message board.
[2025-11-22 01:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:39:10] Checking for apptainer binary...
[2025-11-22 01:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:39:10] Running /usr/bin/apptainer --version
[2025-11-22 01:39:10] apptainer version 1.3.2-1.el7
[2025-11-22 01:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:39:11] c-206-28.aglt2.org
[2025-11-22 01:39:11] apptainer works
[2025-11-22 01:39:11] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:39:11] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:39:11] Starting ATLAS job with PandaID=6894290824
[2025-11-22 01:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:46:25 (24681): wrapper (7.7.26015): starting
13:46:25 (24681): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 13:46:25] Arguments: --nthreads 8
[2025-11-22 13:46:25] Threads: 8
[2025-11-22 13:46:25] This job has been restarted, cleaning up previous attempt
[2025-11-22 13:46:25] Checking for CVMFS
[2025-11-22 13:46:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:46:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:46:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:46:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:46:26] 2.11.2.0 8318 112368 128020 153181 3 56 12075378 18432001 1 130560 0 79303560 99.972 4930174 31660 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 13:46:26] CVMFS is ok
[2025-11-22 13:46:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:46:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:46:26] Further information can be found at the LHC@home message board.
[2025-11-22 13:46:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:46:26] Checking for apptainer binary...
[2025-11-22 13:46:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 13:46:26] Running /usr/bin/apptainer --version
[2025-11-22 13:46:26] apptainer version 1.3.2-1.el7
[2025-11-22 13:46:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:46:27] c-206-28.aglt2.org
[2025-11-22 13:46:27] apptainer works
[2025-11-22 13:46:27] Set ATHENA_PROC_NUMBER=8
[2025-11-22 13:46:27] Set ATHENA_CORE_NUMBER=8
[2025-11-22 13:46:27] Starting ATLAS job with PandaID=6894290824
[2025-11-22 13:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:11:55]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:11:55] 2025-11-23 14:11:21,895 | INFO     | monitor loop #4978: job 0:6894290824 is in state 'finished'
[2025-11-23 09:11:55] 2025-11-23 14:11:21,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 09:11:55] 2025-11-23 14:11:22,375 | INFO     | time since job start (69882s) is within the limit (172800.0s)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,447 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 09:11:55] 2025-11-23 14:11:23,450 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2256.0416666666665
[2025-11-23 09:11:55] 2025-11-23 14:11:23,453 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894290824/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,453 | INFO     | extracted standard info from prmon json
[2025-11-23 09:11:55] 2025-11-23 14:11:23,453 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 09:11:55] 2025-11-23 14:11:23,453 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 09:11:55] 2025-11-23 14:11:23,469 | INFO     | fitting pss+swap vs Time
[2025-11-23 09:11:55] 2025-11-23 14:11:23,470 | INFO     | sum of square deviations: 465474157588.5461
[2025-11-23 09:11:55] 2025-11-23 14:11:23,494 | INFO     | sum of deviations: 2403897000179.3525
[2025-11-23 09:11:55] 2025-11-23 14:11:23,494 | INFO     | mean x: 1763872119.7537117
[2025-11-23 09:11:55] 2025-11-23 14:11:23,494 | INFO     | mean y: 2874568.270742358
[2025-11-23 09:11:55] 2025-11-23 14:11:23,494 | INFO     | intersect: -9106475173.81316
[2025-11-23 09:11:55] 2025-11-23 14:11:23,495 | INFO     | chi2: 4.912444855417343
[2025-11-23 09:11:55] 2025-11-23 14:11:23,496 | INFO     | sum of square deviations: 459403106965.6936
[2025-11-23 09:11:55] 2025-11-23 14:11:23,519 | INFO     | sum of deviations: 2708591558674.7407
[2025-11-23 09:11:55] 2025-11-23 14:11:23,520 | INFO     | mean x: 1763871967.2570176
[2025-11-23 09:11:55] 2025-11-23 14:11:23,520 | INFO     | mean y: 2882217.7824561405
[2025-11-23 09:11:55] 2025-11-23 14:11:23,520 | INFO     | intersect: -10396718152.03424
[2025-11-23 09:11:55] 2025-11-23 14:11:23,521 | INFO     | chi2: 2.746671101499161
[2025-11-23 09:11:55] 2025-11-23 14:11:23,521 | INFO     | current chi2=2.746671101499161 (change=44.0874924332191 %)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,522 | INFO     | sum of square deviations: 453385080592.8159
[2025-11-23 09:11:55] 2025-11-23 14:11:23,558 | INFO     | sum of deviations: 2804590489819.9004
[2025-11-23 09:11:55] 2025-11-23 14:11:23,559 | INFO     | mean x: 1763871814.7603524
[2025-11-23 09:11:55] 2025-11-23 14:11:23,559 | INFO     | mean y: 2884647.562114537
[2025-11-23 09:11:55] 2025-11-23 14:11:23,559 | INFO     | intersect: -10908233359.38679
[2025-11-23 09:11:55] 2025-11-23 14:11:23,561 | INFO     | chi2: 2.4058459998557558
[2025-11-23 09:11:55] 2025-11-23 14:11:23,561 | INFO     | current chi2=2.4058459998557558 (change=12.408660849760263 %)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,561 | INFO     | right removable region: 1134
[2025-11-23 09:11:55] 2025-11-23 14:11:23,563 | INFO     | sum of square deviations: 459402580535.69354
[2025-11-23 09:11:55] 2025-11-23 14:11:23,607 | INFO     | sum of deviations: 2122789120191.5305
[2025-11-23 09:11:55] 2025-11-23 14:11:23,607 | INFO     | mean x: 1763872272.2570176
[2025-11-23 09:11:55] 2025-11-23 14:11:23,608 | INFO     | mean y: 2881619.5271929824
[2025-11-23 09:11:55] 2025-11-23 14:11:23,608 | INFO     | intersect: -8147549021.477429
[2025-11-23 09:11:55] 2025-11-23 14:11:23,609 | INFO     | chi2: 2.9542599713155715
[2025-11-23 09:11:55] 2025-11-23 14:11:23,610 | INFO     | current chi2=2.9542599713155715 (change=39.86171736752069 %)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,611 | INFO     | sum of square deviations: 453384166691.8536
[2025-11-23 09:11:55] 2025-11-23 14:11:23,637 | INFO     | sum of deviations: 2030214927975.3372
[2025-11-23 09:11:55] 2025-11-23 14:11:23,637 | INFO     | mean x: 1763872424.7585902
[2025-11-23 09:11:55] 2025-11-23 14:11:23,638 | INFO     | mean y: 2883964.888105727
[2025-11-23 09:11:55] 2025-11-23 14:11:23,638 | INFO     | intersect: -7895583583.986024
[2025-11-23 09:11:55] 2025-11-23 14:11:23,639 | INFO     | chi2: 2.865058577556267
[2025-11-23 09:11:55] 2025-11-23 14:11:23,639 | INFO     | current chi2=2.865058577556267 (change=3.01941584780644 %)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,639 | INFO     | left removable region: 20
[2025-11-23 09:11:55] 2025-11-23 14:11:23,640 | INFO     | sum of square deviations: 428681659417.81714
[2025-11-23 09:11:55] 2025-11-23 14:11:23,662 | INFO     | sum of deviations: 2301753325492.35
[2025-11-23 09:11:55] 2025-11-23 14:11:23,662 | INFO     | mean x: 1763872394.2666068
[2025-11-23 09:11:55] 2025-11-23 14:11:23,662 | INFO     | mean y: 2898005.251346499
[2025-11-23 09:11:55] 2025-11-23 14:11:23,662 | INFO     | intersect: -9467997378.425924
[2025-11-23 09:11:55] 2025-11-23 14:11:23,663 | INFO     | chi2: 0.2719700126481749
[2025-11-23 09:11:55] 2025-11-23 14:11:23,663 | INFO     | current memory leak: 5.37 B/s (using 1114 data points, chi2=0.27)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,664 | INFO     | could have reported an average CPU frequency of 2584 MHz (41 samples)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,664 | INFO     | ..............................
[2025-11-23 09:11:55] 2025-11-23 14:11:23,664 | INFO     | . Timing measurements:
[2025-11-23 09:11:55] 2025-11-23 14:11:23,664 | INFO     | . get job = 0 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,664 | INFO     | . initial setup = 2 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | . payload setup = 6 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | . stage-in = 0 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | . payload execution = 69849 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | . stage-out = 4 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | . log creation = 0 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,665 | INFO     | ..............................
[2025-11-23 09:11:55] 2025-11-23 14:11:23,741 | INFO     | 
[2025-11-23 09:11:55] 2025-11-23 14:11:23,741 | INFO     | job summary report
[2025-11-23 09:11:55] 2025-11-23 14:11:23,741 | INFO     | --------------------------------------------------
[2025-11-23 09:11:55] 2025-11-23 14:11:23,741 | INFO     | PanDA job id: 6894290824
[2025-11-23 09:11:55] 2025-11-23 14:11:23,741 | INFO     | task id: 47533967
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | errors: (none)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | pilot state: finished 
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | transexitcode: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | exeerrorcode: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:23,742 | INFO     | exeerrordiag: 
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | exitcode: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | exitmsg: OK
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | cpuconsumptiontime: 546293 s
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | nevents: 1000
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | neventsw: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:23,743 | INFO     | pid: 23873
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | pgrp: 23873
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | corecount: 8
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | event service: False
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | sizes: {0: 2298750, 5: 2299012, 11: 2299068, 69859: 2355379, 69864: 2364429, 69868: 2364715}
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | --------------------------------------------------
[2025-11-23 09:11:55] 2025-11-23 14:11:23,744 | INFO     | 
[2025-11-23 09:11:55] 2025-11-23 14:11:23,745 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 09:11:55] 2025-11-23 14:11:23,760 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,761 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,761 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,761 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,761 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,762 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 09:11:55] 2025-11-23 14:11:23,764 | INFO     | job 6894290824 has completed (purged errors)
[2025-11-23 09:11:55] 2025-11-23 14:11:23,764 | INFO     | overall cleanup function is called
[2025-11-23 09:11:55] 2025-11-23 14:11:24,777 | INFO     | --- collectZombieJob: --- 10, [23873]
[2025-11-23 09:11:55] 2025-11-23 14:11:24,778 | INFO     | zombie collector waiting for pid 23873
[2025-11-23 09:11:55] 2025-11-23 14:11:24,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 09:11:55] 2025-11-23 14:11:24,778 | INFO     | collected zombie processes
[2025-11-23 09:11:55] 2025-11-23 14:11:24,778 | INFO     | will attempt to kill all subprocesses of pid=23873
[2025-11-23 09:11:55] 2025-11-23 14:11:24,934 | INFO     | process IDs to be killed: [23873] (in reverse order)
[2025-11-23 09:11:55] 2025-11-23 14:11:24,993 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 09:11:55] 2025-11-23 14:11:24,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 09:11:55] 2025-11-23 14:11:24,999 | INFO     | did not find any defunct processes belonging to 23873
[2025-11-23 09:11:55] 2025-11-23 14:11:25,004 | INFO     | did not find any defunct processes belonging to 23873
[2025-11-23 09:11:55] 2025-11-23 14:11:25,005 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 09:11:55] 2025-11-23 14:11:25,006 | INFO     | ready for new job
[2025-11-23 09:11:55] 2025-11-23 14:11:25,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 09:11:55] 2025-11-23 14:11:25,011 | INFO     | ***************************************
[2025-11-23 09:11:55] 2025-11-23 14:11:25,011 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 09:11:55] 2025-11-23 14:11:25,011 | INFO     | ***************************************
[2025-11-23 09:11:55] 2025-11-23 14:11:25,012 | INFO     | 
[2025-11-23 09:11:55] 2025-11-23 14:11:25,013 | INFO     | architecture information:
[2025-11-23 09:11:55] 2025-11-23 14:11:25,015 | INFO     | executing command: cat /etc/os-release
[2025-11-23 09:11:55] 2025-11-23 14:11:25,028 | INFO     | cat /etc/os-release:
[2025-11-23 09:11:55] NAME="CentOS Linux"
[2025-11-23 09:11:55] VERSION="7 (Core)"
[2025-11-23 09:11:55] ID="centos"
[2025-11-23 09:11:55] ID_LIKE="rhel fedora"
[2025-11-23 09:11:55] VERSION_ID="7"
[2025-11-23 09:11:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 09:11:55] ANSI_COLOR="0;31"
[2025-11-23 09:11:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 09:11:55] HOME_URL="https://www.centos.org/"
[2025-11-23 09:11:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 09:11:55] 
[2025-11-23 09:11:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 09:11:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 09:11:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 09:11:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 09:11:55] 
[2025-11-23 09:11:55] 2025-11-23 14:11:25,028 | INFO     | ***************************************
[2025-11-23 09:11:55] 2025-11-23 14:11:25,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 09:11:55] 2025-11-23 14:11:25,548 | INFO     | sufficient remaining disk space (24545067008 B)
[2025-11-23 09:11:55] 2025-11-23 14:11:25,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 09:11:55] 2025-11-23 14:11:25,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:11:55] 2025-11-23 14:11:25,555 | INFO     | update_server=False
[2025-11-23 09:11:55] 2025-11-23 14:11:25,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:11:55] 2025-11-23 14:11:25,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:11:55] 2025-11-23 14:11:25,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:11:55] 2025-11-23 14:11:25,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:11:55] 2025-11-23 14:11:25,556 | INFO     | aborting loop
[2025-11-23 09:11:55] 2025-11-23 14:11:25,937 | INFO     | all job control threads have been joined
[2025-11-23 09:11:55] 2025-11-23 14:11:26,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:11:55] 2025-11-23 14:11:26,288 | INFO     | all data control threads have been joined
[2025-11-23 09:11:55] 2025-11-23 14:11:26,560 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:26,560 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:26,562 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:26,580 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:26,582 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:26,827 | INFO     | all payload control threads have been joined
[2025-11-23 09:11:55] 2025-11-23 14:11:26,943 | INFO     | [job] control thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,206 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,213 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,294 | INFO     | [data] control thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,450 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,542 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,561 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,633 | INFO     | [job] validate thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:27,832 | INFO     | [payload] control thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:30,061 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:11:55] 2025-11-23 14:11:36,180 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:11:55] 2025-11-23 14:11:37,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542457624384)>', '<ExcThread(monitor, started 140541790512896)>']
[2025-11-23 09:11:55] 2025-11-23 14:11:42,698 | INFO     | all workflow threads have been joined
[2025-11-23 09:11:55] 2025-11-23 14:11:42,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:11:55] 2025-11-23 14:11:42,699 | INFO     | traces error code: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:42,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:11:55] 2025-11-23 14:11:55,650 | INFO     | PID=3530 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 09:11:55] 2025-11-23 14:11:55,650 | INFO     | .. there are 3 such processes running
[2025-11-23 09:11:55] 2025-11-23 14:11:55,651 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:11:55] 2025-11-23 14:11:55,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:11:55] 2025-11-23 14:11:55,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:11:55] 2025-11-23 14:11:55,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:11:55] 2025-11-23 14:11:55,651 | INFO     | [monitor] control thread has ended
[2025-11-23 09:11:55] 2025-11-23 14:11:55,751 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:11:55] 2025-11-23 14:11:55,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:11:55] 2025-11-23 14:11:55,755 [wrapper] pilotpid: 3530
[2025-11-23 09:11:55] 2025-11-23 14:11:55,757 [wrapper] Pilot exit status: 0
[2025-11-23 09:11:55] 2025-11-23 14:11:55,766 [wrapper] pandaids: 6894290824 6894290824
[2025-11-23 09:11:55] 2025-11-23 14:11:55,794 [wrapper] cleanup supervisor_pilot 30670 3532
[2025-11-23 09:11:55] 2025-11-23 14:11:55,796 [wrapper] Test setup, not cleaning
[2025-11-23 09:11:55] 2025-11-23 14:11:55,798 [wrapper] apfmon messages muted
[2025-11-23 09:11:55] 2025-11-23 14:11:55,801 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:11:55] 2025-11-23 14:11:55,803 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:11:55]  *** Error codes and diagnostics ***
[2025-11-23 09:11:55]     "exeErrorCode": 0,
[2025-11-23 09:11:55]     "exeErrorDiag": "",
[2025-11-23 09:11:55]     "pilotErrorCode": 0,
[2025-11-23 09:11:55]     "pilotErrorDiag": "",
[2025-11-23 09:11:55]  *** Listing of results directory ***
[2025-11-23 09:11:55] total 1733824
[2025-11-23 09:11:55] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 06:49 queuedata.json
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 06:49 pilot3.tar.gz
[2025-11-23 09:11:55] -rwx------ 1 boincer umatlas     36292 Nov 21 06:51 runpilot2-wrapper.sh
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas       100 Nov 22 01:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:11:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 01:39 run_atlas
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas       105 Nov 22 01:39 job.xml
[2025-11-23 09:11:55] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 01:39 EVNT.47493127._002432.pool.root.1
[2025-11-23 09:11:55] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 01:39 ATLAS.root_0
[2025-11-23 09:11:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:39 start_atlas.sh
[2025-11-23 09:11:55] drwxrwx--x 2 boincer umatlas      4096 Nov 22 01:39 shared
[2025-11-23 09:11:55] -rw-r--r-- 2 boincer umatlas    590107 Nov 22 01:39 input.tar.gz
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas         0 Nov 22 01:39 boinc_lockfile
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas      2782 Nov 22 13:46 pandaJob.out
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas        57 Nov 22 13:46 setup.sh.local
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas    989784 Nov 22 13:46 agis_schedconf.cvmfs.json
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas       534 Nov 23 08:58 boinc_task_state.xml
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 09:09 init_data.xml
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas 926086524 Nov 23 09:10 HITS.47533967._004031.pool.root.1
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas      1065 Nov 23 09:11 memory_monitor_summary.json
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas   1526164 Nov 23 09:11 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas   2313810 Nov 23 09:11 log.47533967._004031.job.log.tgz.1
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas      8663 Nov 23 09:11 heartbeat.json
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 09:11 boinc_mmap_file
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas        30 Nov 23 09:11 wrapper_checkpoint.txt
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas        96 Nov 23 09:11 pilot_heartbeat.json
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas       819 Nov 23 09:11 pilotlog.txt
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas   9649100 Nov 23 09:11 log.47533967._004031.job.log.1
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas       353 Nov 23 09:11 output.list
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas       620 Nov 23 09:11 runtime_log
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas  11980800 Nov 23 09:11 result.tar.gz
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas      9428 Nov 23 09:11 runtime_log.err
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas       793 Nov 23 09:11 1B6LDmjqeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKOJKDme3Etym.diag
[2025-11-23 09:11:55] -rw-r--r-- 1 boincer umatlas     23428 Nov 23 09:11 stderr.txt
[2025-11-23 09:11:55] HITS file was successfully produced:
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas 926086524 Nov 23 09:10 shared/HITS.pool.root.1
[2025-11-23 09:11:55]  *** Contents of shared directory: ***
[2025-11-23 09:11:55] total 1317812
[2025-11-23 09:11:55] -rw-r--r-- 3 boincer umatlas 410748550 Nov 22 01:39 ATLAS.root_0
[2025-11-23 09:11:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:39 start_atlas.sh
[2025-11-23 09:11:55] -rw-r--r-- 2 boincer umatlas    590107 Nov 22 01:39 input.tar.gz
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas 926086524 Nov 23 09:10 HITS.pool.root.1
[2025-11-23 09:11:55] -rw------- 1 boincer umatlas  11980800 Nov 23 09:11 result.tar.gz
09:11:57 (24681): run_atlas exited; CPU time 545848.213609
09:11:57 (24681): called boinc_finish(0)

</stderr_txt>
]]>

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