Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:23:32 (15446): wrapper (7.7.26015): starting
20:23:32 (15446): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 20:23:32] Arguments: --nthreads 8
[2025-11-24 20:23:32] Threads: 8
[2025-11-24 20:23:32] Checking for CVMFS
[2025-11-24 20:23:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:23:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:23:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:23:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:23:36] 2.11.2.0 22738 282758 136524 153257 3 84 20451243 25165825 4632 130560 12 140360915 99.881 76769185 2884 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 20:23:36] CVMFS is ok
[2025-11-24 20:23:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:23:36] Checking for apptainer binary...
[2025-11-24 20:23:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:23:36] Running /usr/bin/apptainer --version
[2025-11-24 20:23:36] apptainer version 1.3.2-1.el7
[2025-11-24 20:23:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:23:41] cg-vwn395.simple-grid.lan
[2025-11-24 20:23:41] apptainer works
[2025-11-24 20:23:41] Set ATHENA_PROC_NUMBER=8
[2025-11-24 20:23:41] Set ATHENA_CORE_NUMBER=8
[2025-11-24 20:23:42] Starting ATLAS job with PandaID=6894290662
[2025-11-24 20:23:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:55:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:55:39] 2025-11-25 20:54:51,436 | INFO     | time since job start (91629s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:54:53,385 | INFO     | monitor loop #6154: job 0:6894290662 is in state 'finished'
[2025-11-25 21:55:39] 2025-11-25 20:54:53,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:55:39] 2025-11-25 20:54:53,443 | INFO     | time since job start (91631s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:54:54,630 | INFO     | PID=19214 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:55:39] 2025-11-25 20:54:54,630 | INFO     | .. there are 9 such processes running
[2025-11-25 21:55:39] 2025-11-25 20:54:55,635 | INFO     | time since job start (91633s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:54:55,890 | INFO     | monitor loop #6155: job 0:6894290662 is in state 'finished'
[2025-11-25 21:55:39] 2025-11-25 20:54:55,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:55:39] 2025-11-25 20:54:57,645 | INFO     | time since job start (91635s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:54:58,394 | INFO     | monitor loop #6156: job 0:6894290662 is in state 'finished'
[2025-11-25 21:55:39] 2025-11-25 20:54:58,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:55:39] 2025-11-25 20:54:59,652 | INFO     | time since job start (91637s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:55:00,910 | INFO     | monitor loop #6157: job 0:6894290662 is in state 'finished'
[2025-11-25 21:55:39] 2025-11-25 20:55:00,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,110 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:55:39] 2025-11-25 20:55:01,111 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 21:55:39] 2025-11-25 20:55:01,114 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6894290662/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,115 | INFO     | extracted standard info from prmon json
[2025-11-25 21:55:39] 2025-11-25 20:55:01,115 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:55:39] 2025-11-25 20:55:01,115 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:55:39] 2025-11-25 20:55:01,145 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:55:39] 2025-11-25 20:55:01,148 | INFO     | sum of square deviations: 1031951597126.3055
[2025-11-25 21:55:39] 2025-11-25 20:55:01,223 | INFO     | sum of deviations: 3102732355177.719
[2025-11-25 21:55:39] 2025-11-25 20:55:01,223 | INFO     | mean x: 1764058482.2478232
[2025-11-25 21:55:39] 2025-11-25 20:55:01,223 | INFO     | mean y: 2839025.3764233086
[2025-11-25 21:55:39] 2025-11-25 20:55:01,223 | INFO     | intersect: -5301093198.322733
[2025-11-25 21:55:39] 2025-11-25 20:55:01,225 | INFO     | chi2: 25.28456002418746
[2025-11-25 21:55:39] 2025-11-25 20:55:01,228 | INFO     | sum of square deviations: 1021618985543.4928
[2025-11-25 21:55:39] 2025-11-25 20:55:01,301 | INFO     | sum of deviations: 3584244658959.101
[2025-11-25 21:55:39] 2025-11-25 20:55:01,302 | INFO     | mean x: 1764058329.752016
[2025-11-25 21:55:39] 2025-11-25 20:55:01,302 | INFO     | mean y: 2846130.7211021506
[2025-11-25 21:55:39] 2025-11-25 20:55:01,302 | INFO     | intersect: -6186170259.907435
[2025-11-25 21:55:39] 2025-11-25 20:55:01,304 | INFO     | chi2: 22.17245836821851
[2025-11-25 21:55:39] 2025-11-25 20:55:01,304 | INFO     | current chi2=22.17245836821851 (change=12.308308521057445 %)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,304 | INFO     | right removable region: 1487
[2025-11-25 21:55:39] 2025-11-25 20:55:01,306 | INFO     | sum of square deviations: 1021617849113.4923
[2025-11-25 21:55:39] 2025-11-25 20:55:01,368 | INFO     | sum of deviations: 2474207975977.497
[2025-11-25 21:55:39] 2025-11-25 20:55:01,369 | INFO     | mean x: 1764058634.752016
[2025-11-25 21:55:39] 2025-11-25 20:55:01,369 | INFO     | mean y: 2848300.5866935486
[2025-11-25 21:55:39] 2025-11-25 20:55:01,369 | INFO     | intersect: -4269441918.288036
[2025-11-25 21:55:39] 2025-11-25 20:55:01,371 | INFO     | chi2: 20.577120762682053
[2025-11-25 21:55:39] 2025-11-25 20:55:01,371 | INFO     | current chi2=20.577120762682053 (change=18.617841311069775 %)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,371 | INFO     | left removable region: 10
[2025-11-25 21:55:39] 2025-11-25 20:55:01,373 | INFO     | sum of square deviations: 999128261065.1212
[2025-11-25 21:55:39] 2025-11-25 20:55:01,441 | INFO     | sum of deviations: 2539137946479.917
[2025-11-25 21:55:39] 2025-11-25 20:55:01,441 | INFO     | mean x: 1764058604.2613406
[2025-11-25 21:55:39] 2025-11-25 20:55:01,441 | INFO     | mean y: 2864865.362897766
[2025-11-25 21:55:39] 2025-11-25 20:55:01,441 | INFO     | intersect: -4480231366.065215
[2025-11-25 21:55:39] 2025-11-25 20:55:01,443 | INFO     | chi2: 13.530795443701269
[2025-11-25 21:55:39] 2025-11-25 20:55:01,444 | INFO     | current memory leak: 2.54 B/s (using 1477 data points, chi2=13.53)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,446 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,446 | INFO     | ..............................
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . Timing measurements:
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . get job = 0 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . initial setup = 10 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . payload setup = 159 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . stage-in = 0 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . payload execution = 91189 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . stage-out = 7 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | . log creation = 2 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,447 | INFO     | ..............................
[2025-11-25 21:55:39] 2025-11-25 20:55:01,669 | INFO     | time since job start (91639s) is within the limit (172800.0s)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,922 | INFO     | 
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | job summary report
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | --------------------------------------------------
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | PanDA job id: 6894290662
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | task id: 47533967
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | errors: (none)
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | pilot state: finished 
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | transexitcode: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | exeerrorcode: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:01,923 | INFO     | exeerrordiag: 
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | exitcode: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | exitmsg: OK
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | cpuconsumptiontime: 341762 s
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | nevents: 1000
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | neventsw: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | pid: 25752
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | pgrp: 25752
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | corecount: 8
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | event service: False
[2025-11-25 21:55:39] 2025-11-25 20:55:01,924 | INFO     | sizes: {0: 2284032, 1: 2284287, 12: 2284287, 23: 2284315, 34: 2284343, 44: 2284371, 55: 2284527, 66: 2284555, 77: 2284583, 87: 2284639, 90: 2284929, 98: 2285237, 9
[2025-11-25 21:55:39] 2025-11-25 20:55:01,925 | INFO     | --------------------------------------------------
[2025-11-25 21:55:39] 2025-11-25 20:55:01,925 | INFO     | 
[2025-11-25 21:55:39] 2025-11-25 20:55:01,925 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 21:55:39] 2025-11-25 20:55:02,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:55:39] 2025-11-25 20:55:02,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,355 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:55:39] 2025-11-25 20:55:02,355 | INFO     | job 6894290662 has completed (purged errors)
[2025-11-25 21:55:39] 2025-11-25 20:55:02,355 | INFO     | overall cleanup function is called
[2025-11-25 21:55:39] 2025-11-25 20:55:03,378 | INFO     | --- collectZombieJob: --- 10, [25752]
[2025-11-25 21:55:39] 2025-11-25 20:55:03,379 | INFO     | zombie collector waiting for pid 25752
[2025-11-25 21:55:39] 2025-11-25 20:55:03,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:55:39] 2025-11-25 20:55:03,379 | INFO     | collected zombie processes
[2025-11-25 21:55:39] 2025-11-25 20:55:03,379 | INFO     | will attempt to kill all subprocesses of pid=25752
[2025-11-25 21:55:39] 2025-11-25 20:55:03,491 | INFO     | process IDs to be killed: [25752] (in reverse order)
[2025-11-25 21:55:39] 2025-11-25 20:55:04,180 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:55:39] 2025-11-25 20:55:04,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:55:39] 2025-11-25 20:55:04,184 | INFO     | did not find any defunct processes belonging to 25752
[2025-11-25 21:55:39] 2025-11-25 20:55:04,187 | INFO     | did not find any defunct processes belonging to 25752
[2025-11-25 21:55:39] 2025-11-25 20:55:04,243 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:55:39] 2025-11-25 20:55:04,244 | INFO     | ready for new job
[2025-11-25 21:55:39] 2025-11-25 20:55:04,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:55:39] 2025-11-25 20:55:04,250 | INFO     | ***************************************
[2025-11-25 21:55:39] 2025-11-25 20:55:04,251 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:55:39] 2025-11-25 20:55:04,251 | INFO     | ***************************************
[2025-11-25 21:55:39] 2025-11-25 20:55:04,251 | INFO     | 
[2025-11-25 21:55:39] 2025-11-25 20:55:04,252 | INFO     | pilot is running in a VM
[2025-11-25 21:55:39] 2025-11-25 20:55:04,252 | INFO     | architecture information:
[2025-11-25 21:55:39] 2025-11-25 20:55:04,258 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:55:39] 2025-11-25 20:55:04,481 | INFO     | cat /etc/os-release:
[2025-11-25 21:55:39] NAME="CentOS Linux"
[2025-11-25 21:55:39] VERSION="7 (Core)"
[2025-11-25 21:55:39] ID="centos"
[2025-11-25 21:55:39] ID_LIKE="rhel fedora"
[2025-11-25 21:55:39] VERSION_ID="7"
[2025-11-25 21:55:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:55:39] ANSI_COLOR="0;31"
[2025-11-25 21:55:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:55:39] HOME_URL="https://www.centos.org/"
[2025-11-25 21:55:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:55:39] 
[2025-11-25 21:55:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:55:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:55:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:55:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:55:39] 
[2025-11-25 21:55:39] 2025-11-25 20:55:04,481 | INFO     | ***************************************
[2025-11-25 21:55:39] 2025-11-25 20:55:04,985 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 21:55:39] 2025-11-25 20:55:05,229 | INFO     | sufficient remaining disk space (494765342720 B)
[2025-11-25 21:55:39] 2025-11-25 20:55:05,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:55:39] 2025-11-25 20:55:05,230 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:55:39] 2025-11-25 20:55:05,230 | INFO     | update_server=False
[2025-11-25 21:55:39] 2025-11-25 20:55:05,230 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:55:39] 2025-11-25 20:55:05,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:55:39] 2025-11-25 20:55:05,234 | INFO     | aborting loop
[2025-11-25 21:55:39] 2025-11-25 20:55:05,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:55:39] 2025-11-25 20:55:06,236 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,239 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,289 | INFO     | all data control threads have been joined
[2025-11-25 21:55:39] 2025-11-25 20:55:06,354 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,378 | INFO     | all job control threads have been joined
[2025-11-25 21:55:39] 2025-11-25 20:55:06,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:55:39] 2025-11-25 20:55:06,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:55:39] 2025-11-25 20:55:06,669 | INFO     | all payload control threads have been joined
[2025-11-25 21:55:39] 2025-11-25 20:55:06,783 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,813 | INFO     | [job] validate thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:06,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,104 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,295 | INFO     | [data] control thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,384 | INFO     | [job] control thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,551 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,602 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,675 | INFO     | [payload] control thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:07,777 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:10,542 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:55:39] 2025-11-25 20:55:22,530 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:55:39] 2025-11-25 20:55:24,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667083593536)>', '<ExcThread(monitor, started 140666352957184)>']
[2025-11-25 21:55:39] 2025-11-25 20:55:29,335 | INFO     | all workflow threads have been joined
[2025-11-25 21:55:39] 2025-11-25 20:55:29,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:55:39] 2025-11-25 20:55:29,336 | INFO     | traces error code: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:29,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:55:39] 2025-11-25 20:55:34,892 | INFO     | PID=19214 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:55:39] 2025-11-25 20:55:34,892 | INFO     | .. there are 9 such processes running
[2025-11-25 21:55:39] 2025-11-25 20:55:34,893 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:55:39] 2025-11-25 20:55:34,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:55:39] 2025-11-25 20:55:34,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:55:39] 2025-11-25 20:55:34,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:55:39] 2025-11-25 20:55:34,893 | INFO     | [monitor] control thread has ended
[2025-11-25 21:55:39] 2025-11-25 20:55:35,337 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:55:39] 2025-11-25 20:55:35,496 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:55:39] 2025-11-25 20:55:35,668 [wrapper] pilotpid: 19214
[2025-11-25 21:55:39] 2025-11-25 20:55:35,734 [wrapper] Pilot exit status: 0
[2025-11-25 21:55:39] 2025-11-25 20:55:35,802 [wrapper] pandaids: 6894290662
[2025-11-25 21:55:39] 2025-11-25 20:55:37,054 [wrapper] cleanup supervisor_pilot  7676 19215
[2025-11-25 21:55:39] 2025-11-25 20:55:37,129 [wrapper] Test setup, not cleaning
[2025-11-25 21:55:39] 2025-11-25 20:55:37,191 [wrapper] apfmon messages muted
[2025-11-25 21:55:39] 2025-11-25 20:55:37,241 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:55:39] 2025-11-25 20:55:37,290 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:55:39]  *** Error codes and diagnostics ***
[2025-11-25 21:55:39]     "exeErrorCode": 0,
[2025-11-25 21:55:39]     "exeErrorDiag": "",
[2025-11-25 21:55:39]     "pilotErrorCode": 0,
[2025-11-25 21:55:39]     "pilotErrorDiag": "",
[2025-11-25 21:55:39]  *** Listing of results directory ***
[2025-11-25 21:55:39] total 1332640
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-25 21:55:39] -rwx------. 1 boinc boinc     36292 Nov 21 12:46 runpilot2-wrapper.sh
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:46 queuedata.json
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc       100 Nov 24 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:55:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 20:23 run_atlas
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc       105 Nov 24 20:23 job.xml
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc 410152426 Nov 24 20:23 EVNT.47493127._002428.pool.root.1
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 20:23 start_atlas.sh
[2025-11-25 21:55:39] drwxrwx--x. 2 boinc boinc        68 Nov 24 20:23 shared
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc    590103 Nov 24 20:23 input.tar.gz
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc      6392 Nov 24 20:23 init_data.xml
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc         0 Nov 24 20:23 boinc_lockfile
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc      2785 Nov 24 20:23 pandaJob.out
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc    991801 Nov 24 20:27 agis_schedconf.cvmfs.json
[2025-11-25 21:55:39] drwx------. 5 boinc boinc      4096 Nov 24 20:27 pilot3
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc       533 Nov 25 21:27 boinc_task_state.xml
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc 921070169 Nov 25 21:52 HITS.47533967._003994.pool.root.1
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc      1031 Nov 25 21:53 memory_monitor_summary.json
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc   1516240 Nov 25 21:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc   2560478 Nov 25 21:53 log.47533967._003994.job.log.tgz.1
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc      8632 Nov 25 21:55 heartbeat.json
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc        95 Nov 25 21:55 pilot_heartbeat.json
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:55 boinc_mmap_file
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc        29 Nov 25 21:55 wrapper_checkpoint.txt
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc       820 Nov 25 21:55 pilotlog.txt
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc  12189755 Nov 25 21:55 log.47533967._003994.job.log.1
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc       353 Nov 25 21:55 output.list
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:55 runtime_log
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc  14766080 Nov 25 21:55 result.tar.gz
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc       662 Nov 25 21:55 WrSNDmcleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNNJKDmbBBNan.diag
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc      8817 Nov 25 21:55 runtime_log.err
[2025-11-25 21:55:39] -rw-r--r--. 1 boinc boinc     21506 Nov 25 21:55 stderr.txt
[2025-11-25 21:55:39] HITS file was successfully produced:
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc 921070169 Nov 25 21:52 shared/HITS.pool.root.1
[2025-11-25 21:55:39]  *** Contents of shared directory: ***
[2025-11-25 21:55:39] total 1315040
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc 410152426 Nov 24 20:23 ATLAS.root_0
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 20:23 start_atlas.sh
[2025-11-25 21:55:39] -rw-r--r--. 2 boinc boinc    590103 Nov 24 20:23 input.tar.gz
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc 921070169 Nov 25 21:52 HITS.pool.root.1
[2025-11-25 21:55:39] -rw-------. 1 boinc boinc  14766080 Nov 25 21:55 result.tar.gz
21:55:41 (15446): run_atlas exited; CPU time 342333.207082
21:55:41 (15446): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN