Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:53:02 (1129258): wrapper (7.7.26015): starting
05:53:02 (1129258): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 05:53:02] Arguments: --nthreads 3
[2025-11-26 05:53:02] Threads: 3
[2025-11-26 05:53:02] Checking for CVMFS
[2025-11-26 05:53:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:53:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:53:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:54:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:54:00] 2.13.3.0 1129478 0 31240 153297 3 1 41255274 52428801 0 130560 0 0 0.000 1293 59 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 05:54:00] CVMFS is ok
[2025-11-26 05:54:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:54:00] Checking for apptainer binary...
[2025-11-26 05:54:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:54:00] Running /usr/bin/apptainer --version
[2025-11-26 05:54:00] apptainer version 1.4.4-1.el9
[2025-11-26 05:54:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:54:00] testio004
[2025-11-26 05:54:00] apptainer works
[2025-11-26 05:54:00] Set ATHENA_PROC_NUMBER=3
[2025-11-26 05:54:00] Set ATHENA_CORE_NUMBER=3
[2025-11-26 05:54:00] Starting ATLAS job with PandaID=6894289848
[2025-11-26 05:54:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:11:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:11:17] 2025-11-26 09:10:38,025 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:11:17] 2025-11-26 09:10:38,025 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:11:17] 2025-11-26 09:10:38,029 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:11:17] 2025-11-26 09:10:38,030 | INFO     | sum of square deviations: 116220300755.30084
[2025-11-26 18:11:17] 2025-11-26 09:10:38,035 | INFO     | sum of deviations: 384034544738.93243
[2025-11-26 18:11:17] 2025-11-26 09:10:38,035 | INFO     | mean x: 1764126137.0485437
[2025-11-26 18:11:17] 2025-11-26 09:10:38,035 | INFO     | mean y: 2189403.8876560335
[2025-11-26 18:11:17] 2025-11-26 09:10:38,035 | INFO     | intersect: -5827131063.36805
[2025-11-26 18:11:17] 2025-11-26 09:10:38,036 | INFO     | chi2: 5.973833850454049
[2025-11-26 18:11:17] 2025-11-26 09:10:38,036 | INFO     | sum of square deviations: 113819131525.28908
[2025-11-26 18:11:17] 2025-11-26 09:10:38,041 | INFO     | sum of deviations: 546644124353.4503
[2025-11-26 18:11:17] 2025-11-26 09:10:38,041 | INFO     | mean x: 1764125984.5488827
[2025-11-26 18:11:17] 2025-11-26 09:10:38,041 | INFO     | mean y: 2199733.187150838
[2025-11-26 18:11:17] 2025-11-26 09:10:38,041 | INFO     | intersect: -8470445341.060556
[2025-11-26 18:11:17] 2025-11-26 09:10:38,042 | INFO     | chi2: 3.597139195600557
[2025-11-26 18:11:17] 2025-11-26 09:10:38,042 | INFO     | current chi2=3.597139195600557 (change=39.78508131210995 %)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,042 | INFO     | sum of square deviations: 111451265245.27693
[2025-11-26 18:11:17] 2025-11-26 09:10:38,047 | INFO     | sum of deviations: 558875314246.6654
[2025-11-26 18:11:17] 2025-11-26 09:10:38,047 | INFO     | mean x: 1764125832.0492265
[2025-11-26 18:11:17] 2025-11-26 09:10:38,047 | INFO     | mean y: 2200516.2095639943
[2025-11-26 18:11:17] 2025-11-26 09:10:38,047 | INFO     | intersect: -8844055078.891928
[2025-11-26 18:11:17] 2025-11-26 09:10:38,048 | INFO     | chi2: 3.522893762596649
[2025-11-26 18:11:17] 2025-11-26 09:10:38,048 | INFO     | current chi2=3.522893762596649 (change=2.0640133441239312 %)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,048 | INFO     | right removable region: 710
[2025-11-26 18:11:17] 2025-11-26 09:10:38,048 | INFO     | sum of square deviations: 113819110175.28906
[2025-11-26 18:11:17] 2025-11-26 09:10:38,053 | INFO     | sum of deviations: 223148760287.58655
[2025-11-26 18:11:17] 2025-11-26 09:10:38,053 | INFO     | mean x: 1764126289.5488827
[2025-11-26 18:11:17] 2025-11-26 09:10:38,053 | INFO     | mean y: 2199613.9832402235
[2025-11-26 18:11:17] 2025-11-26 09:10:38,053 | INFO     | intersect: -3456469091.977528
[2025-11-26 18:11:17] 2025-11-26 09:10:38,054 | INFO     | chi2: 3.621527371678976
[2025-11-26 18:11:17] 2025-11-26 09:10:38,054 | INFO     | current chi2=3.621527371678976 (change=39.37683132242258 %)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,054 | INFO     | sum of square deviations: 111451222545.27692
[2025-11-26 18:11:17] 2025-11-26 09:10:38,059 | INFO     | sum of deviations: 113659699943.01086
[2025-11-26 18:11:17] 2025-11-26 09:10:38,059 | INFO     | mean x: 1764126442.0492265
[2025-11-26 18:11:17] 2025-11-26 09:10:38,059 | INFO     | mean y: 2206659.6568213785
[2025-11-26 18:11:17] 2025-11-26 09:10:38,059 | INFO     | intersect: -1796877078.3738625
[2025-11-26 18:11:17] 2025-11-26 09:10:38,060 | INFO     | chi2: 2.572738194019704
[2025-11-26 18:11:17] 2025-11-26 09:10:38,060 | INFO     | current chi2=2.572738194019704 (change=28.95985781747779 %)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,060 | INFO     | sum of square deviations: 109116405302.76483
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | sum of deviations: 91457488928.18689
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | mean x: 1764126594.549575
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | mean y: 2208108.6232294617
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | intersect: -1476420041.2068644
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | chi2: 2.5402174181344774
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | current chi2=2.5402174181344774 (change=1.264053060696993 %)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,065 | INFO     | left removable region: 30
[2025-11-26 18:11:17] 2025-11-26 09:10:38,066 | INFO     | sum of square deviations: 97499499880.19858
[2025-11-26 18:11:17] 2025-11-26 09:10:38,070 | INFO     | sum of deviations: 221505936121.43378
[2025-11-26 18:11:17] 2025-11-26 09:10:38,070 | INFO     | mean x: 1764126716.5514705
[2025-11-26 18:11:17] 2025-11-26 09:10:38,070 | INFO     | mean y: 2222776.9161764705
[2025-11-26 18:11:17] 2025-11-26 09:10:38,070 | INFO     | intersect: -4005639214.85519
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | chi2: 0.046546993596344524
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | current memory leak: 2.27 B/s (using 680 data points, chi2=0.05)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | could have reported an average CPU frequency of 3605 MHz (27 samples)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | ..............................
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . Timing measurements:
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . get job = 0 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . initial setup = 5 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . payload setup = 4 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . stage-in = 0 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . payload execution = 43972 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . stage-out = 8 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | . log creation = 0 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,071 | INFO     | ..............................
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | 
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | job summary report
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | --------------------------------------------------
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | PanDA job id: 6894289848
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | task id: 47533967
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | errors: (none)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | pilot state: finished 
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | transexitcode: 0
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | exeerrorcode: 0
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | exeerrordiag: 
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | exitcode: 0
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | exitmsg: OK
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | cpuconsumptiontime: 118832 s
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | nevents: 1000
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | neventsw: 0
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | pid: 1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | pgrp: 1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:38,385 | INFO     | corecount: 3
[2025-11-26 18:11:17] 2025-11-26 09:10:38,386 | INFO     | event service: False
[2025-11-26 18:11:17] 2025-11-26 09:10:38,386 | INFO     | sizes: {0: 2284213, 3: 2284475, 11: 2284503, 43981: 2329794, 43989: 2338816, 43993: 2338872, 44071: 2339246}
[2025-11-26 18:11:17] 2025-11-26 09:10:38,386 | INFO     | --------------------------------------------------
[2025-11-26 18:11:17] 2025-11-26 09:10:38,386 | INFO     | 
[2025-11-26 18:11:17] 2025-11-26 09:10:38,386 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | job 6894289848 has completed (purged errors)
[2025-11-26 18:11:17] 2025-11-26 09:10:38,397 | INFO     | overall cleanup function is called
[2025-11-26 18:11:17] 2025-11-26 09:10:39,405 | INFO     | --- collectZombieJob: --- 10, [1140080]
[2025-11-26 18:11:17] 2025-11-26 09:10:39,406 | INFO     | zombie collector waiting for pid 1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:39,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:11:17] 2025-11-26 09:10:39,406 | INFO     | collected zombie processes
[2025-11-26 18:11:17] 2025-11-26 09:10:39,406 | INFO     | will attempt to kill all subprocesses of pid=1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:39,437 | INFO     | process IDs to be killed: [1140080] (in reverse order)
[2025-11-26 18:11:17] 2025-11-26 09:10:39,457 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:11:17] 2025-11-26 09:10:39,457 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:11:17] 2025-11-26 09:10:39,458 | INFO     | did not find any defunct processes belonging to 1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:39,459 | INFO     | did not find any defunct processes belonging to 1140080
[2025-11-26 18:11:17] 2025-11-26 09:10:39,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:11:17] 2025-11-26 09:10:39,460 | INFO     | ready for new job
[2025-11-26 18:11:17] 2025-11-26 09:10:39,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | ***************************************
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | ***************************************
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | 
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | architecture information:
[2025-11-26 18:11:17] 2025-11-26 09:10:39,462 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:11:17] 2025-11-26 09:10:39,469 | INFO     | cat /etc/os-release:
[2025-11-26 18:11:17] NAME="CentOS Linux"
[2025-11-26 18:11:17] VERSION="7 (Core)"
[2025-11-26 18:11:17] ID="centos"
[2025-11-26 18:11:17] ID_LIKE="rhel fedora"
[2025-11-26 18:11:17] VERSION_ID="7"
[2025-11-26 18:11:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:11:17] ANSI_COLOR="0;31"
[2025-11-26 18:11:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:11:17] HOME_URL="https://www.centos.org/"
[2025-11-26 18:11:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:11:17] 
[2025-11-26 18:11:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:11:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:11:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:11:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:11:17] 
[2025-11-26 18:11:17] 2025-11-26 09:10:39,469 | INFO     | ***************************************
[2025-11-26 18:11:17] 2025-11-26 09:10:39,971 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-26 18:11:17] 2025-11-26 09:10:39,979 | INFO     | sufficient remaining disk space (323845357568 B)
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | INFO     | update_server=False
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:11:17] 2025-11-26 09:10:39,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:11:17] 2025-11-26 09:10:40,451 | INFO     | all data control threads have been joined
[2025-11-26 18:11:17] 2025-11-26 09:10:40,599 | INFO     | all job control threads have been joined
[2025-11-26 18:11:17] 2025-11-26 09:10:40,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:11:17] 2025-11-26 09:10:40,957 | INFO     | aborting loop
[2025-11-26 18:11:17] 2025-11-26 09:10:40,984 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:40,985 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,046 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,405 | INFO     | all payload control threads have been joined
[2025-11-26 18:11:17] 2025-11-26 09:10:41,414 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,456 | INFO     | [data] control thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,604 | INFO     | [job] control thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,892 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,900 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,906 | INFO     | [job] validate thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,962 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:41,985 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:42,258 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:42,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:42,409 | INFO     | [payload] control thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:42,409 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:42,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:11:17] 2025-11-26 09:10:46,746 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:11:17] 2025-11-26 09:10:53,126 [wrapper] supervise_pilot (15 min periods counter: 50)
[2025-11-26 18:11:17] 2025-11-26 09:11:09,611 | INFO     | PID=1133539 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:11:17] 2025-11-26 09:11:09,611 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:11:17] 2025-11-26 09:11:09,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:11:17] 2025-11-26 09:11:09,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:11:17] 2025-11-26 09:11:10,749 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:11:17] 2025-11-26 09:11:12,244 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074046367552)>', '<ExcThread(monitor, started 140073177708288)>']
[2025-11-26 18:11:17] 2025-11-26 09:11:12,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:11:17] 2025-11-26 09:11:12,626 | INFO     | [monitor] control thread has ended
[2025-11-26 18:11:17] 2025-11-26 09:11:17,263 | INFO     | all workflow threads have been joined
[2025-11-26 18:11:17] 2025-11-26 09:11:17,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:11:17] 2025-11-26 09:11:17,264 | INFO     | traces error code: 0
[2025-11-26 18:11:17] 2025-11-26 09:11:17,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:11:17] 2025-11-26 09:11:17,320 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:11:17] 2025-11-26 09:11:17,322 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:11:17] 2025-11-26 09:11:17,324 [wrapper] pilotpid: 1133539
[2025-11-26 18:11:17] 2025-11-26 09:11:17,325 [wrapper] Pilot exit status: 0
[2025-11-26 18:11:17] 2025-11-26 09:11:17,331 [wrapper] pandaids: 6894289848
[2025-11-26 18:11:17] 2025-11-26 09:11:17,342 [wrapper] cleanup supervisor_pilot 1211429 1133540
[2025-11-26 18:11:17] 2025-11-26 09:11:17,344 [wrapper] Test setup, not cleaning
[2025-11-26 18:11:17] 2025-11-26 09:11:17,345 [wrapper] apfmon messages muted
[2025-11-26 18:11:17] 2025-11-26 09:11:17,348 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:11:17] 2025-11-26 09:11:17,350 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:11:17]  *** Error codes and diagnostics ***
[2025-11-26 18:11:17]     "exeErrorCode": 0,
[2025-11-26 18:11:17]     "exeErrorDiag": "",
[2025-11-26 18:11:17]     "pilotErrorCode": 0,
[2025-11-26 18:11:17]     "pilotErrorDiag": "",
[2025-11-26 18:11:17]  *** Listing of results directory ***
[2025-11-26 18:11:17] total 1328004
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc    576529 Nov 21 20:32 pilot3.tar.gz
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc      5112 Nov 21 20:39 queuedata.json
[2025-11-26 18:11:17] -rwx------. 1 boinc boinc     36292 Nov 21 20:41 runpilot2-wrapper.sh
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc       100 Nov 26 05:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:11:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 05:53 run_atlas
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc       105 Nov 26 05:53 job.xml
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:53 start_atlas.sh
[2025-11-26 18:11:17] drwxrwx--x. 2 boinc boinc        68 Nov 26 05:53 shared
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc    590102 Nov 26 05:53 input.tar.gz
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc 407849584 Nov 26 05:53 EVNT.47493127._002420.pool.root.1
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc         0 Nov 26 05:53 boinc_lockfile
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc      2784 Nov 26 05:54 pandaJob.out
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc    991893 Nov 26 05:55 agis_schedconf.cvmfs.json
[2025-11-26 18:11:17] drwx------. 5 boinc boinc      4096 Nov 26 05:55 pilot3
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc      9322 Nov 26 06:55 init_data.xml
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc       532 Nov 26 18:01 boinc_task_state.xml
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc 933447835 Nov 26 18:08 HITS.47533967._003912.pool.root.1
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc      1024 Nov 26 18:09 memory_monitor_summary.json
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc   1516240 Nov 26 18:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc   1343563 Nov 26 18:09 log.47533967._003912.job.log.tgz.1
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc      8579 Nov 26 18:10 heartbeat.json
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc      8192 Nov 26 18:11 boinc_mmap_file
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc        96 Nov 26 18:11 pilot_heartbeat.json
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc        29 Nov 26 18:11 wrapper_checkpoint.txt
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc      4749 Nov 26 18:11 pilotlog.txt
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc   5992043 Nov 26 18:11 log.47533967._003912.job.log.1
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc       353 Nov 26 18:11 output.list
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc       620 Nov 26 18:11 runtime_log
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc   7352320 Nov 26 18:11 result.tar.gz
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc      8776 Nov 26 18:11 runtime_log.err
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc       652 Nov 26 18:11 L4oLDmfheg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0MJKDmAJt2Do.diag
[2025-11-26 18:11:17] -rw-r--r--. 1 boinc boinc     20789 Nov 26 18:11 stderr.txt
[2025-11-26 18:11:17] HITS file was successfully produced:
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc 933447835 Nov 26 18:08 shared/HITS.pool.root.1
[2025-11-26 18:11:17]  *** Contents of shared directory: ***
[2025-11-26 18:11:17] total 1317640
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:53 start_atlas.sh
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc    590102 Nov 26 05:53 input.tar.gz
[2025-11-26 18:11:17] -rw-r--r--. 2 boinc boinc 407849584 Nov 26 05:53 ATLAS.root_0
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc 933447835 Nov 26 18:08 HITS.pool.root.1
[2025-11-26 18:11:17] -rw-------. 1 boinc boinc   7352320 Nov 26 18:11 result.tar.gz
18:11:18 (1129258): run_atlas exited; CPU time 118885.545357
18:11:18 (1129258): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN