Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:39:19 (27510): wrapper (7.7.26015): starting
01:39:19 (27510): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:39:19] Arguments: --nthreads 8
[2025-11-25 01:39:19] Threads: 8
[2025-11-25 01:39:19] Checking for CVMFS
[2025-11-25 01:39:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:39:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:39:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:39:22] 2.11.2.0 25230 283068 142772 153264 1 85 15838372 25165825 1027 130560 12 122967159 99.847 88852217 2940 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:39:22] CVMFS is ok
[2025-11-25 01:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:39:22] Checking for apptainer binary...
[2025-11-25 01:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:39:22] Running /usr/bin/apptainer --version
[2025-11-25 01:39:22] apptainer version 1.3.2-1.el7
[2025-11-25 01:39:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:39:40] cg-vwn359.simple-grid.lan
[2025-11-25 01:39:40] apptainer works
[2025-11-25 01:39:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:39:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:39:40] Starting ATLAS job with PandaID=6894290518
[2025-11-25 01:39:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:01:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:01:48] 2025-11-26 01:00:32,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:01:48] 2025-11-26 01:00:32,702 | INFO     | PID=31228 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:01:48] 2025-11-26 01:00:32,702 | INFO     | .. there are 8 such processes running
[2025-11-26 02:01:48] 2025-11-26 01:00:33,706 | INFO     | time since job start (87384s) is within the limit (172800.0s)
[2025-11-26 02:01:48] 2025-11-26 01:00:34,749 | INFO     | monitor loop #5861: job 0:6894290518 is in state 'finished'
[2025-11-26 02:01:48] 2025-11-26 01:00:34,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:01:48] 2025-11-26 01:00:35,712 | INFO     | time since job start (87386s) is within the limit (172800.0s)
[2025-11-26 02:01:48] 2025-11-26 01:00:37,257 | INFO     | monitor loop #5862: job 0:6894290518 is in state 'finished'
[2025-11-26 02:01:48] 2025-11-26 01:00:37,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:01:48] 2025-11-26 01:00:37,719 | INFO     | time since job start (87388s) is within the limit (172800.0s)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,480 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:01:48] 2025-11-26 01:00:39,481 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:01:48] 2025-11-26 01:00:39,482 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6894290518/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,483 | INFO     | extracted standard info from prmon json
[2025-11-26 02:01:48] 2025-11-26 01:00:39,483 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:01:48] 2025-11-26 01:00:39,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:01:48] 2025-11-26 01:00:39,514 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:01:48] 2025-11-26 01:00:39,516 | INFO     | sum of square deviations: 893502695909.3342
[2025-11-26 02:01:48] 2025-11-26 01:00:39,574 | INFO     | sum of deviations: 5388087384086.39
[2025-11-26 02:01:48] 2025-11-26 01:00:39,574 | INFO     | mean x: 1764075441.216444
[2025-11-26 02:01:48] 2025-11-26 01:00:39,574 | INFO     | mean y: 2840210.290934645
[2025-11-26 02:01:48] 2025-11-26 01:00:39,574 | INFO     | intersect: -10635060126.116608
[2025-11-26 02:01:48] 2025-11-26 01:00:39,576 | INFO     | chi2: 22.783118369252847
[2025-11-26 02:01:48] 2025-11-26 01:00:39,578 | INFO     | sum of square deviations: 884117829279.4106
[2025-11-26 02:01:48] 2025-11-26 01:00:39,668 | INFO     | sum of deviations: 5876894989916.066
[2025-11-26 02:01:48] 2025-11-26 01:00:39,668 | INFO     | mean x: 1764075288.7207334
[2025-11-26 02:01:48] 2025-11-26 01:00:39,669 | INFO     | mean y: 2848153.2122708037
[2025-11-26 02:01:48] 2025-11-26 01:00:39,669 | INFO     | intersect: -11723287077.617023
[2025-11-26 02:01:48] 2025-11-26 01:00:39,670 | INFO     | chi2: 19.511590717724285
[2025-11-26 02:01:48] 2025-11-26 01:00:39,671 | INFO     | current chi2=19.511590717724285 (change=14.359437538382277 %)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,671 | INFO     | right removable region: 1417
[2025-11-26 02:01:48] 2025-11-26 01:00:39,677 | INFO     | sum of square deviations: 884116773369.4099
[2025-11-26 02:01:48] 2025-11-26 01:00:39,730 | INFO     | time since job start (87390s) is within the limit (172800.0s)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,755 | INFO     | sum of deviations: 4780224956289.64
[2025-11-26 02:01:48] 2025-11-26 01:00:39,756 | INFO     | mean x: 1764075593.7207334
[2025-11-26 02:01:48] 2025-11-26 01:00:39,756 | INFO     | mean y: 2850086.6784203104
[2025-11-26 02:01:48] 2025-11-26 01:00:39,756 | INFO     | intersect: -9535118688.360182
[2025-11-26 02:01:48] 2025-11-26 01:00:39,758 | INFO     | chi2: 17.650685276823097
[2025-11-26 02:01:48] 2025-11-26 01:00:39,758 | INFO     | current chi2=17.650685276823097 (change=22.52735121350319 %)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,758 | INFO     | left removable region: 10
[2025-11-26 02:01:48] 2025-11-26 01:00:39,761 | INFO     | sum of square deviations: 863700844057.3905
[2025-11-26 02:01:48] 2025-11-26 01:00:39,776 | INFO     | monitor loop #5863: job 0:6894290518 is in state 'finished'
[2025-11-26 02:01:48] 2025-11-26 01:00:39,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,831 | INFO     | sum of deviations: 4827852881490.178
[2025-11-26 02:01:48] 2025-11-26 01:00:39,832 | INFO     | mean x: 1764075563.2302773
[2025-11-26 02:01:48] 2025-11-26 01:00:39,832 | INFO     | mean y: 2869204.592039801
[2025-11-26 02:01:48] 2025-11-26 01:00:39,832 | INFO     | intersect: -9857833548.804588
[2025-11-26 02:01:48] 2025-11-26 01:00:39,834 | INFO     | chi2: 9.232716647097256
[2025-11-26 02:01:48] 2025-11-26 01:00:39,834 | INFO     | current memory leak: 5.59 B/s (using 1407 data points, chi2=9.23)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,836 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,836 | INFO     | ..............................
[2025-11-26 02:01:48] 2025-11-26 01:00:39,836 | INFO     | . Timing measurements:
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . get job = 0 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . initial setup = 13 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . payload setup = 203 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . stage-in = 0 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . payload execution = 86918 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . stage-out = 4 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | . log creation = 1 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,837 | INFO     | ..............................
[2025-11-26 02:01:48] 2025-11-26 01:00:39,962 | INFO     | 
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | job summary report
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | --------------------------------------------------
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | PanDA job id: 6894290518
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | task id: 47533967
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | errors: (none)
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | pilot state: finished 
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | transexitcode: 0
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | exeerrorcode: 0
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | exeerrordiag: 
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | exitcode: 0
[2025-11-26 02:01:48] 2025-11-26 01:00:39,963 | INFO     | exitmsg: OK
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | cpuconsumptiontime: 336480 s
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | nevents: 1000
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | neventsw: 0
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | pid: 5289
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | pgrp: 5289
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | corecount: 8
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | event service: False
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | sizes: {0: 2283431, 1: 2284033, 2: 2284316, 3: 2284316, 13: 2284344, 24: 2284400, 35: 2284556, 46: 2284584, 57: 2284612, 67: 2284640, 78: 2284668, 89: 2285004, 100
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | --------------------------------------------------
[2025-11-26 02:01:48] 2025-11-26 01:00:39,964 | INFO     | 
[2025-11-26 02:01:48] 2025-11-26 01:00:39,965 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-26 02:01:48] 2025-11-26 01:00:40,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,077 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,077 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,077 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:01:48] 2025-11-26 01:00:40,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:01:48] 2025-11-26 01:00:40,079 | INFO     | job 6894290518 has completed (purged errors)
[2025-11-26 02:01:48] 2025-11-26 01:00:40,079 | INFO     | overall cleanup function is called
[2025-11-26 02:01:48] 2025-11-26 01:00:41,096 | INFO     | --- collectZombieJob: --- 10, [5289]
[2025-11-26 02:01:48] 2025-11-26 01:00:41,097 | INFO     | zombie collector waiting for pid 5289
[2025-11-26 02:01:48] 2025-11-26 01:00:41,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:01:48] 2025-11-26 01:00:41,097 | INFO     | collected zombie processes
[2025-11-26 02:01:48] 2025-11-26 01:00:41,097 | INFO     | will attempt to kill all subprocesses of pid=5289
[2025-11-26 02:01:48] 2025-11-26 01:00:41,189 | INFO     | process IDs to be killed: [5289] (in reverse order)
[2025-11-26 02:01:48] 2025-11-26 01:00:41,252 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:01:48] 2025-11-26 01:00:41,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:01:48] 2025-11-26 01:00:41,255 | INFO     | did not find any defunct processes belonging to 5289
[2025-11-26 02:01:48] 2025-11-26 01:00:41,258 | INFO     | did not find any defunct processes belonging to 5289
[2025-11-26 02:01:48] 2025-11-26 01:00:41,260 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:01:48] 2025-11-26 01:00:41,260 | INFO     | ready for new job
[2025-11-26 02:01:48] 2025-11-26 01:00:41,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:01:48] 2025-11-26 01:00:41,266 | INFO     | ***************************************
[2025-11-26 02:01:48] 2025-11-26 01:00:41,267 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:01:48] 2025-11-26 01:00:41,267 | INFO     | ***************************************
[2025-11-26 02:01:48] 2025-11-26 01:00:41,267 | INFO     | 
[2025-11-26 02:01:48] 2025-11-26 01:00:41,268 | INFO     | pilot is running in a VM
[2025-11-26 02:01:48] 2025-11-26 01:00:41,268 | INFO     | architecture information:
[2025-11-26 02:01:48] 2025-11-26 01:00:41,269 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:01:48] 2025-11-26 01:00:41,299 | INFO     | cat /etc/os-release:
[2025-11-26 02:01:48] NAME="CentOS Linux"
[2025-11-26 02:01:48] VERSION="7 (Core)"
[2025-11-26 02:01:48] ID="centos"
[2025-11-26 02:01:48] ID_LIKE="rhel fedora"
[2025-11-26 02:01:48] VERSION_ID="7"
[2025-11-26 02:01:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:01:48] ANSI_COLOR="0;31"
[2025-11-26 02:01:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:01:48] HOME_URL="https://www.centos.org/"
[2025-11-26 02:01:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:01:48] 
[2025-11-26 02:01:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:01:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:01:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:01:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:01:48] 
[2025-11-26 02:01:48] 2025-11-26 01:00:41,299 | INFO     | ***************************************
[2025-11-26 02:01:48] 2025-11-26 01:00:41,801 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-26 02:01:48] 2025-11-26 01:00:41,819 | INFO     | sufficient remaining disk space (495368273920 B)
[2025-11-26 02:01:48] 2025-11-26 01:00:41,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:01:48] 2025-11-26 01:00:41,820 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:01:48] 2025-11-26 01:00:41,820 | INFO     | update_server=False
[2025-11-26 02:01:48] 2025-11-26 01:00:41,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:01:48] 2025-11-26 01:00:41,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:01:48] 2025-11-26 01:00:41,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:01:48] 2025-11-26 01:00:42,097 | INFO     | all data control threads have been joined
[2025-11-26 02:01:48] 2025-11-26 01:00:42,277 | INFO     | all payload control threads have been joined
[2025-11-26 02:01:48] 2025-11-26 01:00:42,281 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:01:48] 2025-11-26 01:00:42,282 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:01:48] 2025-11-26 01:00:42,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:01:48] 2025-11-26 01:00:42,282 | INFO     | will abort loop
[2025-11-26 02:01:48] 2025-11-26 01:00:42,825 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:42,826 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:42,881 | INFO     | all job control threads have been joined
[2025-11-26 02:01:48] 2025-11-26 01:00:42,964 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,098 | INFO     | [data] control thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,112 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,278 | INFO     | [payload] control thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,286 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,342 | INFO     | [job] validate thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,377 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,886 | INFO     | [job] control thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:43,919 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:44,218 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:44,313 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:44,365 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:44,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:01:48] 2025-11-26 01:00:48,707 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:00:52,128 | INFO     | job.realtimelogging is not enabled
[2025-11-26 02:01:48] 2025-11-26 01:00:53,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:01:48] 2025-11-26 01:01:12,950 | INFO     | PID=31228 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 02:01:48] 2025-11-26 01:01:12,950 | INFO     | .. there are 8 such processes running
[2025-11-26 02:01:48] 2025-11-26 01:01:12,951 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:01:48] 2025-11-26 01:01:12,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:01:48] 2025-11-26 01:01:12,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:01:48] 2025-11-26 01:01:40,959 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:01:48] 2025-11-26 01:01:42,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223293806400)>', '<ExcThread(monitor, started 140222981445376)>']
[2025-11-26 02:01:48] 2025-11-26 01:01:43,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:01:48] 2025-11-26 01:01:43,125 | INFO     | [monitor] control thread has ended
[2025-11-26 02:01:48] 2025-11-26 01:01:47,847 | INFO     | all workflow threads have been joined
[2025-11-26 02:01:48] 2025-11-26 01:01:47,847 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:01:48] 2025-11-26 01:01:47,848 | INFO     | traces error code: 0
[2025-11-26 02:01:48] 2025-11-26 01:01:47,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:01:48] 2025-11-26 01:01:48,013 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:01:48] 2025-11-26 01:01:48,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:01:48] 2025-11-26 01:01:48,028 [wrapper] pilotpid: 31228
[2025-11-26 02:01:48] 2025-11-26 01:01:48,038 [wrapper] Pilot exit status: 0
[2025-11-26 02:01:48] 2025-11-26 01:01:48,080 [wrapper] pandaids: 6894290518
[2025-11-26 02:01:48] 2025-11-26 01:01:48,147 [wrapper] cleanup supervisor_pilot  2371 31229
[2025-11-26 02:01:48] 2025-11-26 01:01:48,189 [wrapper] Test setup, not cleaning
[2025-11-26 02:01:48] 2025-11-26 01:01:48,198 [wrapper] apfmon messages muted
[2025-11-26 02:01:48] 2025-11-26 01:01:48,211 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:01:48] 2025-11-26 01:01:48,214 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:01:48]  *** Error codes and diagnostics ***
[2025-11-26 02:01:48]     "exeErrorCode": 0,
[2025-11-26 02:01:48]     "exeErrorDiag": "",
[2025-11-26 02:01:48]     "pilotErrorCode": 0,
[2025-11-26 02:01:48]     "pilotErrorDiag": "",
[2025-11-26 02:01:48]  *** Listing of results directory ***
[2025-11-26 02:01:48] total 1324940
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:42 queuedata.json
[2025-11-26 02:01:48] -rwx------. 1 boinc boinc     36292 Nov 21 12:43 runpilot2-wrapper.sh
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:01:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:39 run_atlas
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:39 job.xml
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc      6394 Nov 25 01:39 init_data.xml
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc 408757957 Nov 25 01:39 EVNT.47493127._002421.pool.root.1
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:39 start_atlas.sh
[2025-11-26 02:01:48] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:39 shared
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc    590105 Nov 25 01:39 input.tar.gz
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:39 boinc_lockfile
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:39 pandaJob.out
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc    991801 Nov 25 01:43 agis_schedconf.cvmfs.json
[2025-11-26 02:01:48] drwx------. 5 boinc boinc      4096 Nov 25 01:44 pilot3
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:46 boinc_task_state.xml
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc 915688041 Nov 26 01:59 HITS.47533967._003926.pool.root.1
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc      1034 Nov 26 02:00 memory_monitor_summary.json
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc   1516240 Nov 26 02:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc   2513627 Nov 26 02:00 log.47533967._003926.job.log.tgz.1
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc      8628 Nov 26 02:00 heartbeat.json
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc        95 Nov 26 02:01 pilot_heartbeat.json
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:01 boinc_mmap_file
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:01 wrapper_checkpoint.txt
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc      5143 Nov 26 02:01 pilotlog.txt
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc  11679284 Nov 26 02:01 log.47533967._003926.job.log.1
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc       353 Nov 26 02:01 output.list
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:01 runtime_log
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc  14213120 Nov 26 02:01 result.tar.gz
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc      8833 Nov 26 02:01 runtime_log.err
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc       662 Nov 26 02:01 JP5LDmjieg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNaHKDmCn8Wxn.diag
[2025-11-26 02:01:48] -rw-r--r--. 1 boinc boinc     21462 Nov 26 02:01 stderr.txt
[2025-11-26 02:01:48] HITS file was successfully produced:
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc 915688041 Nov 26 01:59 shared/HITS.pool.root.1
[2025-11-26 02:01:48]  *** Contents of shared directory: ***
[2025-11-26 02:01:48] total 1307884
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc 408757957 Nov 25 01:39 ATLAS.root_0
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:39 start_atlas.sh
[2025-11-26 02:01:48] -rw-r--r--. 2 boinc boinc    590105 Nov 25 01:39 input.tar.gz
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc 915688041 Nov 26 01:59 HITS.pool.root.1
[2025-11-26 02:01:48] -rw-------. 1 boinc boinc  14213120 Nov 26 02:01 result.tar.gz
02:01:50 (27510): run_atlas exited; CPU time 336960.078919
02:01:50 (27510): called boinc_finish(0)

</stderr_txt>
]]>

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