Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:55:20 (25781): wrapper (7.7.26015): starting
00:55:20 (25781): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 00:55:20] Arguments: --nthreads 12
[2025-11-22 00:55:20] Threads: 12
[2025-11-22 00:55:20] Checking for CVMFS
[2025-11-22 00:55:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:55:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:55:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:55:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:55:20] 2.11.2.0 2947 281482 89404 153161 3 82 19479660 20275201 1 130560 1 126914788 99.970 16222538 12671 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:55:20] CVMFS is ok
[2025-11-22 00:55:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:55:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:55:20] Further information can be found at the LHC@home message board.
[2025-11-22 00:55:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:55:20] Checking for apptainer binary...
[2025-11-22 00:55:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:55:20] Running /usr/bin/apptainer --version
[2025-11-22 00:55:20] apptainer version 1.3.2-1.el7
[2025-11-22 00:55:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:55:22] c-205-18.aglt2.org
[2025-11-22 00:55:22] apptainer works
[2025-11-22 00:55:22] Set ATHENA_PROC_NUMBER=12
[2025-11-22 00:55:22] Set ATHENA_CORE_NUMBER=12
[2025-11-22 00:55:22] Starting ATLAS job with PandaID=6894290554
[2025-11-22 00:55:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:10:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:10:25] 2025-11-22 13:09:28,471 | INFO     | PID=29486 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 08:10:25] 2025-11-22 13:09:29,471 | INFO     | time since job start (26032s) is within the limit (172800.0s)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,154 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 08:10:25] 2025-11-22 13:09:30,160 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-22 08:10:25] 2025-11-22 13:09:30,162 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894290554/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,163 | INFO     | extracted standard info from prmon json
[2025-11-22 08:10:25] 2025-11-22 13:09:30,163 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:10:25] 2025-11-22 13:09:30,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:10:25] 2025-11-22 13:09:30,171 | INFO     | fitting pss+swap vs Time
[2025-11-22 08:10:25] 2025-11-22 13:09:30,172 | INFO     | sum of square deviations: 24141377641.86413
[2025-11-22 08:10:25] 2025-11-22 13:09:30,176 | INFO     | sum of deviations: 410164483338.19434
[2025-11-22 08:10:25] 2025-11-22 13:09:30,176 | INFO     | mean x: 1763803959.2224824
[2025-11-22 08:10:25] 2025-11-22 13:09:30,176 | INFO     | mean y: 3432262.25058548
[2025-11-22 08:10:25] 2025-11-22 13:09:30,176 | INFO     | intersect: -29963777992.967
[2025-11-22 08:10:25] 2025-11-22 13:09:30,177 | INFO     | chi2: 6.059095276352105
[2025-11-22 08:10:25] 2025-11-22 13:09:30,177 | INFO     | sum of square deviations: 23303242064.113728
[2025-11-22 08:10:25] 2025-11-22 13:09:30,181 | INFO     | sum of deviations: 574222826085.9143
[2025-11-22 08:10:25] 2025-11-22 13:09:30,181 | INFO     | mean x: 1763803806.7251184
[2025-11-22 08:10:25] 2025-11-22 13:09:30,181 | INFO     | mean y: 3462076.7061611377
[2025-11-22 08:10:25] 2025-11-22 13:09:30,181 | INFO     | intersect: -43459005668.00723
[2025-11-22 08:10:25] 2025-11-22 13:09:30,182 | INFO     | chi2: 3.024903398751753
[2025-11-22 08:10:25] 2025-11-22 13:09:30,182 | INFO     | current chi2=3.024903398751753 (change=50.07664905753215 %)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,182 | INFO     | sum of square deviations: 22484734761.35738
[2025-11-22 08:10:25] 2025-11-22 13:09:30,186 | INFO     | sum of deviations: 613164664302.0214
[2025-11-22 08:10:25] 2025-11-22 13:09:30,186 | INFO     | mean x: 1763803654.2278178
[2025-11-22 08:10:25] 2025-11-22 13:09:30,186 | INFO     | mean y: 3469284.705035971
[2025-11-22 08:10:25] 2025-11-22 13:09:30,186 | INFO     | intersect: -48095922903.72162
[2025-11-22 08:10:25] 2025-11-22 13:09:30,187 | INFO     | chi2: 2.609843347405272
[2025-11-22 08:10:25] 2025-11-22 13:09:30,187 | INFO     | current chi2=2.609843347405272 (change=13.72143161721325 %)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,187 | INFO     | right removable region: 416
[2025-11-22 08:10:25] 2025-11-22 13:09:30,188 | INFO     | sum of square deviations: 23303184114.113728
[2025-11-22 08:10:25] 2025-11-22 13:09:30,191 | INFO     | sum of deviations: 263346950490.2844
[2025-11-22 08:10:25] 2025-11-22 13:09:30,191 | INFO     | mean x: 1763804111.7251184
[2025-11-22 08:10:25] 2025-11-22 13:09:30,192 | INFO     | mean y: 3458900.8127962085
[2025-11-22 08:10:25] 2025-11-22 13:09:30,192 | INFO     | intersect: -19929114768.53876
[2025-11-22 08:10:25] 2025-11-22 13:09:30,193 | INFO     | chi2: 3.614917771448968
[2025-11-22 08:10:25] 2025-11-22 13:09:30,193 | INFO     | current chi2=3.614917771448968 (change=40.338984508833484 %)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,193 | INFO     | sum of square deviations: 22484670100.25882
[2025-11-22 08:10:25] 2025-11-22 13:09:30,197 | INFO     | sum of deviations: 229634731360.36682
[2025-11-22 08:10:25] 2025-11-22 13:09:30,197 | INFO     | mean x: 1763804264.2230215
[2025-11-22 08:10:25] 2025-11-22 13:09:30,197 | INFO     | mean y: 3465175.565947242
[2025-11-22 08:10:25] 2025-11-22 13:09:30,197 | INFO     | intersect: -18010173298.162903
[2025-11-22 08:10:25] 2025-11-22 13:09:30,198 | INFO     | chi2: 3.561894614427696
[2025-11-22 08:10:25] 2025-11-22 13:09:30,198 | INFO     | current chi2=3.561894614427696 (change=1.4667873620820633 %)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,198 | INFO     | left removable region: 20
[2025-11-22 08:10:25] 2025-11-22 13:09:30,199 | INFO     | sum of square deviations: 19255990665.44432
[2025-11-22 08:10:25] 2025-11-22 13:09:30,202 | INFO     | sum of deviations: 389818173513.2783
[2025-11-22 08:10:25] 2025-11-22 13:09:30,202 | INFO     | mean x: 1763804233.7222223
[2025-11-22 08:10:25] 2025-11-22 13:09:30,202 | INFO     | mean y: 3511546.547979798
[2025-11-22 08:10:25] 2025-11-22 13:09:30,202 | INFO     | intersect: -35702932062.11271
[2025-11-22 08:10:25] 2025-11-22 13:09:30,203 | INFO     | chi2: 0.060975290640441986
[2025-11-22 08:10:25] 2025-11-22 13:09:30,203 | INFO     | current memory leak: 20.24 B/s (using 396 data points, chi2=0.06)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | could have reported an average CPU frequency of 2413 MHz (18 samples)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | ..............................
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | . Timing measurements:
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | . get job = 0 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | . initial setup = 2 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,204 | INFO     | . payload setup = 7 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,205 | INFO     | . stage-in = 0 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,205 | INFO     | . payload execution = 25996 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,205 | INFO     | . stage-out = 3 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,205 | INFO     | . log creation = 0 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,205 | INFO     | ..............................
[2025-11-22 08:10:25] 2025-11-22 13:09:30,694 | INFO     | 
[2025-11-22 08:10:25] 2025-11-22 13:09:30,695 | INFO     | job summary report
[2025-11-22 08:10:25] 2025-11-22 13:09:30,695 | INFO     | --------------------------------------------------
[2025-11-22 08:10:25] 2025-11-22 13:09:30,695 | INFO     | PanDA job id: 6894290554
[2025-11-22 08:10:25] 2025-11-22 13:09:30,695 | INFO     | task id: 47533967
[2025-11-22 08:10:25] 2025-11-22 13:09:30,695 | INFO     | errors: (none)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | pilot state: finished 
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | transexitcode: 0
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | exeerrorcode: 0
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | exeerrordiag: 
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | exitcode: 0
[2025-11-22 08:10:25] 2025-11-22 13:09:30,696 | INFO     | exitmsg: OK
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | cpuconsumptiontime: 299009 s
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | nevents: 1000
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | neventsw: 0
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | pid: 4041
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | pgrp: 4041
[2025-11-22 08:10:25] 2025-11-22 13:09:30,697 | INFO     | corecount: 12
[2025-11-22 08:10:25] 2025-11-22 13:09:30,698 | INFO     | event service: False
[2025-11-22 08:10:25] 2025-11-22 13:09:30,698 | INFO     | sizes: {0: 2298529, 1: 2298784, 6: 2299046, 12: 2299074, 26008: 2336394, 26011: 2345388, 26012: 2345572, 26017: 2345818}
[2025-11-22 08:10:25] 2025-11-22 13:09:30,698 | INFO     | --------------------------------------------------
[2025-11-22 08:10:25] 2025-11-22 13:09:30,698 | INFO     | 
[2025-11-22 08:10:25] 2025-11-22 13:09:30,698 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 08:10:25] 2025-11-22 13:09:30,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,726 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,727 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:10:25] 2025-11-22 13:09:30,728 | INFO     | job 6894290554 has completed (purged errors)
[2025-11-22 08:10:25] 2025-11-22 13:09:30,728 | INFO     | overall cleanup function is called
[2025-11-22 08:10:25] 2025-11-22 13:09:31,745 | INFO     | --- collectZombieJob: --- 10, [4041]
[2025-11-22 08:10:25] 2025-11-22 13:09:31,745 | INFO     | zombie collector waiting for pid 4041
[2025-11-22 08:10:25] 2025-11-22 13:09:31,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:10:25] 2025-11-22 13:09:31,745 | INFO     | collected zombie processes
[2025-11-22 08:10:25] 2025-11-22 13:09:31,745 | INFO     | will attempt to kill all subprocesses of pid=4041
[2025-11-22 08:10:25] 2025-11-22 13:09:31,839 | INFO     | process IDs to be killed: [4041] (in reverse order)
[2025-11-22 08:10:25] 2025-11-22 13:09:31,894 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:10:25] 2025-11-22 13:09:31,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:10:25] 2025-11-22 13:09:31,898 | INFO     | did not find any defunct processes belonging to 4041
[2025-11-22 08:10:25] 2025-11-22 13:09:31,900 | INFO     | did not find any defunct processes belonging to 4041
[2025-11-22 08:10:25] 2025-11-22 13:09:31,903 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:10:25] 2025-11-22 13:09:31,903 | INFO     | ready for new job
[2025-11-22 08:10:25] 2025-11-22 13:09:31,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:10:25] 2025-11-22 13:09:31,905 | INFO     | ***************************************
[2025-11-22 08:10:25] 2025-11-22 13:09:31,906 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:10:25] 2025-11-22 13:09:31,906 | INFO     | ***************************************
[2025-11-22 08:10:25] 2025-11-22 13:09:31,906 | INFO     | 
[2025-11-22 08:10:25] 2025-11-22 13:09:31,906 | INFO     | architecture information:
[2025-11-22 08:10:25] 2025-11-22 13:09:31,907 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:10:25] 2025-11-22 13:09:31,923 | INFO     | cat /etc/os-release:
[2025-11-22 08:10:25] NAME="CentOS Linux"
[2025-11-22 08:10:25] VERSION="7 (Core)"
[2025-11-22 08:10:25] ID="centos"
[2025-11-22 08:10:25] ID_LIKE="rhel fedora"
[2025-11-22 08:10:25] VERSION_ID="7"
[2025-11-22 08:10:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:10:25] ANSI_COLOR="0;31"
[2025-11-22 08:10:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:10:25] HOME_URL="https://www.centos.org/"
[2025-11-22 08:10:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:10:25] 
[2025-11-22 08:10:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:10:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:10:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:10:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:10:25] 
[2025-11-22 08:10:25] 2025-11-22 13:09:31,924 | INFO     | ***************************************
[2025-11-22 08:10:25] 2025-11-22 13:09:32,427 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 08:10:25] 2025-11-22 13:09:32,443 | INFO     | sufficient remaining disk space (28229763072 B)
[2025-11-22 08:10:25] 2025-11-22 13:09:32,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:10:25] 2025-11-22 13:09:32,444 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:10:25] 2025-11-22 13:09:32,444 | INFO     | update_server=False
[2025-11-22 08:10:25] 2025-11-22 13:09:32,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:10:25] 2025-11-22 13:09:32,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:10:25] 2025-11-22 13:09:32,605 | INFO     | all payload control threads have been joined
[2025-11-22 08:10:25] 2025-11-22 13:09:32,861 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 08:10:25] 2025-11-22 13:09:32,862 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 08:10:25] 2025-11-22 13:09:32,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:10:25] 2025-11-22 13:09:32,862 | INFO     | will abort loop
[2025-11-22 08:10:25] 2025-11-22 13:09:33,115 | INFO     | all data control threads have been joined
[2025-11-22 08:10:25] 2025-11-22 13:09:33,311 | INFO     | all job control threads have been joined
[2025-11-22 08:10:25] 2025-11-22 13:09:33,450 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,609 | INFO     | [payload] control thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,621 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,712 | INFO     | [job] validate thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,841 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,867 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:33,894 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,121 | INFO     | [data] control thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,314 | INFO     | [job] control thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,432 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,450 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,737 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:34,889 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:35,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:10:25] 2025-11-22 13:09:35,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:10:25] 2025-11-22 13:09:36,311 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:09:39,783 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:10:25] 2025-11-22 13:10:02,676 | INFO     | PID=29486 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 08:10:25] 2025-11-22 13:10:02,677 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:10:25] 2025-11-22 13:10:02,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:10:25] 2025-11-22 13:10:02,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:10:25] 2025-11-22 13:10:19,287 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:10:25] 2025-11-22 13:10:19,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140670977562432)>', '<ExcThread(monitor, started 140670010373888)>']
[2025-11-22 08:10:25] 2025-11-22 13:10:20,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:10:25] 2025-11-22 13:10:20,761 | INFO     | [monitor] control thread has ended
[2025-11-22 08:10:25] 2025-11-22 13:10:24,829 | INFO     | all workflow threads have been joined
[2025-11-22 08:10:25] 2025-11-22 13:10:24,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:10:25] 2025-11-22 13:10:24,830 | INFO     | traces error code: 0
[2025-11-22 08:10:25] 2025-11-22 13:10:24,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:10:25] 2025-11-22 13:10:24,933 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:10:25] 2025-11-22 13:10:24,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:10:25] 2025-11-22 13:10:24,940 [wrapper] pilotpid: 29486
[2025-11-22 08:10:25] 2025-11-22 13:10:24,944 [wrapper] Pilot exit status: 0
[2025-11-22 08:10:25] 2025-11-22 13:10:24,958 [wrapper] pandaids: 6894290554
[2025-11-22 08:10:25] 2025-11-22 13:10:25,004 [wrapper] cleanup supervisor_pilot 18959 29487
[2025-11-22 08:10:25] 2025-11-22 13:10:25,008 [wrapper] Test setup, not cleaning
[2025-11-22 08:10:25] 2025-11-22 13:10:25,013 [wrapper] apfmon messages muted
[2025-11-22 08:10:25] 2025-11-22 13:10:25,016 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:10:25] 2025-11-22 13:10:25,020 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:10:25]  *** Error codes and diagnostics ***
[2025-11-22 08:10:25]     "exeErrorCode": 0,
[2025-11-22 08:10:25]     "exeErrorDiag": "",
[2025-11-22 08:10:25]     "pilotErrorCode": 0,
[2025-11-22 08:10:25]     "pilotErrorDiag": "",
[2025-11-22 08:10:25]  *** Listing of results directory ***
[2025-11-22 08:10:25] total 1328228
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 06:32 pilot3.tar.gz
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 06:46 queuedata.json
[2025-11-22 08:10:25] -rwx------ 1 boincer umatlas     36292 Nov 21 06:46 runpilot2-wrapper.sh
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas       100 Nov 22 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:10:25] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 00:55 run_atlas
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas       105 Nov 22 00:55 job.xml
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas 412983327 Nov 22 00:55 EVNT.47493127._002425.pool.root.1
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 00:55 start_atlas.sh
[2025-11-22 08:10:25] drwxrwx--x 2 boincer umatlas      4096 Nov 22 00:55 shared
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas    590105 Nov 22 00:55 input.tar.gz
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas         0 Nov 22 00:55 boinc_lockfile
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 00:55 pandaJob.out
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas        57 Nov 22 00:55 setup.sh.local
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas    989752 Nov 22 00:55 agis_schedconf.cvmfs.json
[2025-11-22 08:10:25] drwx------ 5 boincer umatlas      4096 Nov 22 00:55 pilot3
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas       532 Nov 22 08:00 boinc_task_state.xml
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 08:03 init_data.xml
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas 931567879 Nov 22 08:08 HITS.47533967._003962.pool.root.1
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas      1064 Nov 22 08:09 memory_monitor_summary.json
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas   1526164 Nov 22 08:09 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas   2176597 Nov 22 08:09 log.47533967._003962.job.log.tgz.1
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas      8678 Nov 22 08:09 heartbeat.json
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas        95 Nov 22 08:10 pilot_heartbeat.json
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 08:10 boinc_mmap_file
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas        29 Nov 22 08:10 wrapper_checkpoint.txt
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas      4932 Nov 22 08:10 pilotlog.txt
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas   3636148 Nov 22 08:10 log.47533967._003962.job.log.1
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas       353 Nov 22 08:10 output.list
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas       620 Nov 22 08:10 runtime_log
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas   5836800 Nov 22 08:10 result.tar.gz
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 08:10 runtime_log.err
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas       670 Nov 22 08:10 PqCMDmvleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzNJKDmQbCiFm.diag
[2025-11-22 08:10:25] -rw-r--r-- 1 boincer umatlas     21394 Nov 22 08:10 stderr.txt
[2025-11-22 08:10:25] HITS file was successfully produced:
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas 931567879 Nov 22 08:08 shared/HITS.pool.root.1
[2025-11-22 08:10:25]  *** Contents of shared directory: ***
[2025-11-22 08:10:25] total 1319344
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas 412983327 Nov 22 00:55 ATLAS.root_0
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 00:55 start_atlas.sh
[2025-11-22 08:10:25] -rw-r--r-- 2 boincer umatlas    590105 Nov 22 00:55 input.tar.gz
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas 931567879 Nov 22 08:08 HITS.pool.root.1
[2025-11-22 08:10:25] -rw------- 1 boincer umatlas   5836800 Nov 22 08:10 result.tar.gz
08:10:27 (25781): run_atlas exited; CPU time 292471.524275
08:10:27 (25781): called boinc_finish(0)

</stderr_txt>
]]>

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