Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:45:33 (17577): wrapper (7.7.26015): starting
02:45:33 (17577): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:45:33] Arguments: --nthreads 8
[2025-11-25 02:45:33] Threads: 8
[2025-11-25 02:45:33] Checking for CVMFS
[2025-11-25 02:45:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:45:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:45:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:45:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:45:36] 2.11.2.0 3755 283322 139816 153265 3 85 18787912 25165825 4632 130560 10 139324222 99.893 72602031 3071 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:45:36] CVMFS is ok
[2025-11-25 02:45:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:45:36] Checking for apptainer binary...
[2025-11-25 02:45:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:45:36] Running /usr/bin/apptainer --version
[2025-11-25 02:45:36] apptainer version 1.3.2-1.el7
[2025-11-25 02:45:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:45:53] cg-vwn224.simple-grid.lan
[2025-11-25 02:45:53] apptainer works
[2025-11-25 02:45:53] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:45:53] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:45:53] Starting ATLAS job with PandaID=6894290545
[2025-11-25 02:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:49:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:49:41] 2025-11-26 02:48:53,436 | INFO     | time since job start (89938s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:48:53,713 | INFO     | monitor loop #5984: job 0:6894290545 is in state 'finished'
[2025-11-26 03:49:41] 2025-11-26 02:48:53,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:49:41] 2025-11-26 02:48:55,442 | INFO     | time since job start (89940s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:48:56,221 | INFO     | monitor loop #5985: job 0:6894290545 is in state 'finished'
[2025-11-26 03:49:41] 2025-11-26 02:48:56,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:49:41] 2025-11-26 02:48:57,449 | INFO     | time since job start (89942s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:48:58,726 | INFO     | monitor loop #5986: job 0:6894290545 is in state 'finished'
[2025-11-26 03:49:41] 2025-11-26 02:48:58,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:49:41] 2025-11-26 02:48:59,456 | INFO     | time since job start (89944s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:49:01,243 | INFO     | monitor loop #5987: job 0:6894290545 is in state 'finished'
[2025-11-26 03:49:41] 2025-11-26 02:49:01,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:49:41] 2025-11-26 02:49:01,463 | INFO     | time since job start (89946s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:49:02,746 | INFO     | PID=21369 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:49:41] 2025-11-26 02:49:02,746 | INFO     | .. there are 9 such processes running
[2025-11-26 03:49:41] 2025-11-26 02:49:02,753 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 03:49:41] 2025-11-26 02:49:02,754 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 03:49:41] 2025-11-26 02:49:02,756 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6894290545/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:49:41] 2025-11-26 02:49:02,757 | INFO     | extracted standard info from prmon json
[2025-11-26 03:49:41] 2025-11-26 02:49:02,757 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:49:41] 2025-11-26 02:49:02,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:49:41] 2025-11-26 02:49:02,807 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:49:41] 2025-11-26 02:49:02,809 | INFO     | sum of square deviations: 984983326941.3939
[2025-11-26 03:49:41] 2025-11-26 02:49:02,907 | INFO     | sum of deviations: 2816358667051.7925
[2025-11-26 03:49:41] 2025-11-26 02:49:02,908 | INFO     | mean x: 1764080380.8020408
[2025-11-26 03:49:41] 2025-11-26 02:49:02,908 | INFO     | mean y: 2857755.8721088436
[2025-11-26 03:49:41] 2025-11-26 02:49:02,908 | INFO     | intersect: -5041169827.087644
[2025-11-26 03:49:41] 2025-11-26 02:49:02,910 | INFO     | chi2: 13.354567692733966
[2025-11-26 03:49:41] 2025-11-26 02:49:02,912 | INFO     | sum of square deviations: 974967174055.3889
[2025-11-26 03:49:41] 2025-11-26 02:49:02,993 | INFO     | sum of deviations: 3311686997152.5254
[2025-11-26 03:49:41] 2025-11-26 02:49:02,993 | INFO     | mean x: 1764080228.3064847
[2025-11-26 03:49:41] 2025-11-26 02:49:02,993 | INFO     | mean y: 2865296.860750853
[2025-11-26 03:49:41] 2025-11-26 02:49:02,994 | INFO     | intersect: -5989214959.253132
[2025-11-26 03:49:41] 2025-11-26 02:49:02,995 | INFO     | chi2: 10.06893825362083
[2025-11-26 03:49:41] 2025-11-26 02:49:02,995 | INFO     | current chi2=10.06893825362083 (change=24.603038561111944 %)
[2025-11-26 03:49:41] 2025-11-26 02:49:02,996 | INFO     | right removable region: 1464
[2025-11-26 03:49:41] 2025-11-26 02:49:02,998 | INFO     | sum of square deviations: 974966006515.3877
[2025-11-26 03:49:41] 2025-11-26 02:49:03,074 | INFO     | sum of deviations: 2360253664164.1665
[2025-11-26 03:49:41] 2025-11-26 02:49:03,074 | INFO     | mean x: 1764080533.3064847
[2025-11-26 03:49:41] 2025-11-26 02:49:03,074 | INFO     | mean y: 2864695.877133106
[2025-11-26 03:49:41] 2025-11-26 02:49:03,074 | INFO     | intersect: -4267722703.881192
[2025-11-26 03:49:41] 2025-11-26 02:49:03,076 | INFO     | chi2: 10.75122939650291
[2025-11-26 03:49:41] 2025-11-26 02:49:03,076 | INFO     | current chi2=10.75122939650291 (change=19.493991540044348 %)
[2025-11-26 03:49:41] 2025-11-26 02:49:03,076 | INFO     | left removable region: 10
[2025-11-26 03:49:41] 2025-11-26 02:49:03,078 | INFO     | sum of square deviations: 953169631591.609
[2025-11-26 03:49:41] 2025-11-26 02:49:03,149 | INFO     | sum of deviations: 2870105110171.0024
[2025-11-26 03:49:41] 2025-11-26 02:49:03,149 | INFO     | mean x: 1764080502.8101788
[2025-11-26 03:49:41] 2025-11-26 02:49:03,150 | INFO     | mean y: 2875635.7028885833
[2025-11-26 03:49:41] 2025-11-26 02:49:03,150 | INFO     | intersect: -5308976838.461792
[2025-11-26 03:49:41] 2025-11-26 02:49:03,151 | INFO     | chi2: 6.525363819510553
[2025-11-26 03:49:41] 2025-11-26 02:49:03,152 | INFO     | current memory leak: 3.01 B/s (using 1454 data points, chi2=6.53)
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | ..............................
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | . Timing measurements:
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | . get job = 0 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | . initial setup = 14 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,153 | INFO     | . payload setup = 12 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,154 | INFO     | . stage-in = 0 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,154 | INFO     | . payload execution = 89672 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,154 | INFO     | . stage-out = 6 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,154 | INFO     | . log creation = 2 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,154 | INFO     | ..............................
[2025-11-26 03:49:41] 2025-11-26 02:49:03,734 | INFO     | 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,734 | INFO     | job summary report
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | --------------------------------------------------
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | PanDA job id: 6894290545
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | task id: 47533967
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | errors: (none)
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | pilot state: finished 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | transexitcode: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | exeerrorcode: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | exeerrordiag: 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | exitcode: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:03,735 | INFO     | exitmsg: OK
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | cpuconsumptiontime: 337556 s
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | nevents: 1000
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | neventsw: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | pid: 27982
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | pgrp: 27982
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | corecount: 8
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | event service: False
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 22: 2284315, 33: 2284343, 44: 2284399, 55: 2284555, 66: 2284583, 76: 2284611, 87: 2284667, 98: 2284695, 107: 2285265, 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | --------------------------------------------------
[2025-11-26 03:49:41] 2025-11-26 02:49:03,736 | INFO     | 
[2025-11-26 03:49:41] 2025-11-26 02:49:03,737 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-26 03:49:41] 2025-11-26 02:49:03,752 | INFO     | time since job start (89948s) is within the limit (172800.0s)
[2025-11-26 03:49:41] 2025-11-26 02:49:04,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,373 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,373 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,375 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:49:41] 2025-11-26 02:49:04,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:49:41] 2025-11-26 02:49:04,376 | INFO     | job 6894290545 has completed (purged errors)
[2025-11-26 03:49:41] 2025-11-26 02:49:04,376 | INFO     | overall cleanup function is called
[2025-11-26 03:49:41] 2025-11-26 02:49:05,399 | INFO     | --- collectZombieJob: --- 10, [27982]
[2025-11-26 03:49:41] 2025-11-26 02:49:05,400 | INFO     | zombie collector waiting for pid 27982
[2025-11-26 03:49:41] 2025-11-26 02:49:05,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:49:41] 2025-11-26 02:49:05,400 | INFO     | collected zombie processes
[2025-11-26 03:49:41] 2025-11-26 02:49:05,400 | INFO     | will attempt to kill all subprocesses of pid=27982
[2025-11-26 03:49:41] 2025-11-26 02:49:05,530 | INFO     | process IDs to be killed: [27982] (in reverse order)
[2025-11-26 03:49:41] 2025-11-26 02:49:06,166 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:49:41] 2025-11-26 02:49:06,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:49:41] 2025-11-26 02:49:06,170 | INFO     | did not find any defunct processes belonging to 27982
[2025-11-26 03:49:41] 2025-11-26 02:49:06,173 | INFO     | did not find any defunct processes belonging to 27982
[2025-11-26 03:49:41] 2025-11-26 02:49:06,245 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:49:41] 2025-11-26 02:49:06,245 | INFO     | ready for new job
[2025-11-26 03:49:41] 2025-11-26 02:49:06,245 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:49:41] 2025-11-26 02:49:06,251 | INFO     | ***************************************
[2025-11-26 03:49:41] 2025-11-26 02:49:06,252 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:49:41] 2025-11-26 02:49:06,252 | INFO     | ***************************************
[2025-11-26 03:49:41] 2025-11-26 02:49:06,252 | INFO     | 
[2025-11-26 03:49:41] 2025-11-26 02:49:06,253 | INFO     | pilot is running in a VM
[2025-11-26 03:49:41] 2025-11-26 02:49:06,253 | INFO     | architecture information:
[2025-11-26 03:49:41] 2025-11-26 02:49:06,263 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:49:41] 2025-11-26 02:49:06,550 | INFO     | cat /etc/os-release:
[2025-11-26 03:49:41] NAME="CentOS Linux"
[2025-11-26 03:49:41] VERSION="7 (Core)"
[2025-11-26 03:49:41] ID="centos"
[2025-11-26 03:49:41] ID_LIKE="rhel fedora"
[2025-11-26 03:49:41] VERSION_ID="7"
[2025-11-26 03:49:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:49:41] ANSI_COLOR="0;31"
[2025-11-26 03:49:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:49:41] HOME_URL="https://www.centos.org/"
[2025-11-26 03:49:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:49:41] 
[2025-11-26 03:49:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:49:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:49:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:49:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:49:41] 
[2025-11-26 03:49:41] 2025-11-26 02:49:06,550 | INFO     | ***************************************
[2025-11-26 03:49:41] 2025-11-26 02:49:07,053 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-26 03:49:41] 2025-11-26 02:49:07,287 | INFO     | sufficient remaining disk space (495590572032 B)
[2025-11-26 03:49:41] 2025-11-26 02:49:07,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:49:41] 2025-11-26 02:49:07,287 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:49:41] 2025-11-26 02:49:07,287 | INFO     | update_server=False
[2025-11-26 03:49:41] 2025-11-26 02:49:07,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:49:41] 2025-11-26 02:49:07,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:49:41] 2025-11-26 02:49:07,292 | INFO     | aborting loop
[2025-11-26 03:49:41] 2025-11-26 02:49:07,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:49:41] 2025-11-26 02:49:07,819 | INFO     | all job control threads have been joined
[2025-11-26 03:49:41] 2025-11-26 02:49:07,903 | INFO     | all data control threads have been joined
[2025-11-26 03:49:41] 2025-11-26 02:49:08,001 | INFO     | all payload control threads have been joined
[2025-11-26 03:49:41] 2025-11-26 02:49:08,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:49:41] 2025-11-26 02:49:08,293 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,298 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,318 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,421 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,741 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,825 | INFO     | [job] control thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,909 | INFO     | [data] control thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:08,925 | INFO     | [job] validate thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,007 | INFO     | [payload] control thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,291 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,429 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,513 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:49:41] 2025-11-26 02:49:09,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,756 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:09,873 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:13,674 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:49:41] 2025-11-26 02:49:31,467 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:49:41] 2025-11-26 02:49:31,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140217663362880)>', '<ExcThread(monitor, started 140217344300800)>']
[2025-11-26 03:49:41] 2025-11-26 02:49:36,920 | INFO     | PID=21369 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 03:49:41] 2025-11-26 02:49:36,920 | INFO     | .. there are 9 such processes running
[2025-11-26 03:49:41] 2025-11-26 02:49:36,921 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:49:41] 2025-11-26 02:49:36,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:49:41] 2025-11-26 02:49:36,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:49:41] 2025-11-26 02:49:36,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:49:41] 2025-11-26 02:49:36,925 | INFO     | [monitor] control thread has ended
[2025-11-26 03:49:41] 2025-11-26 02:49:37,010 | INFO     | all workflow threads have been joined
[2025-11-26 03:49:41] 2025-11-26 02:49:37,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:49:41] 2025-11-26 02:49:37,011 | INFO     | traces error code: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:37,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:49:41] 2025-11-26 02:49:37,317 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:49:41] 2025-11-26 02:49:37,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:49:41] 2025-11-26 02:49:37,426 [wrapper] pilotpid: 21369
[2025-11-26 03:49:41] 2025-11-26 02:49:37,466 [wrapper] Pilot exit status: 0
[2025-11-26 03:49:41] 2025-11-26 02:49:37,840 [wrapper] pandaids: 6894290545
[2025-11-26 03:49:41] 2025-11-26 02:49:38,603 [wrapper] cleanup supervisor_pilot 12244 21370
[2025-11-26 03:49:41] 2025-11-26 02:49:38,691 [wrapper] Test setup, not cleaning
[2025-11-26 03:49:41] 2025-11-26 02:49:38,817 [wrapper] apfmon messages muted
[2025-11-26 03:49:41] 2025-11-26 02:49:38,909 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:49:41] 2025-11-26 02:49:39,003 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:49:41]  *** Error codes and diagnostics ***
[2025-11-26 03:49:41]     "exeErrorCode": 0,
[2025-11-26 03:49:41]     "exeErrorDiag": "",
[2025-11-26 03:49:41]     "pilotErrorCode": 0,
[2025-11-26 03:49:41]     "pilotErrorDiag": "",
[2025-11-26 03:49:41]  *** Listing of results directory ***
[2025-11-26 03:49:41] total 1321560
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:46 queuedata.json
[2025-11-26 03:49:41] -rwx------. 1 boinc boinc     36292 Nov 21 12:46 runpilot2-wrapper.sh
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:49:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:45 run_atlas
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:45 job.xml
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc 409556169 Nov 25 02:45 EVNT.47493127._002424.pool.root.1
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc      6391 Nov 25 02:45 init_data.xml
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:45 start_atlas.sh
[2025-11-26 03:49:41] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:45 shared
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc    590106 Nov 25 02:45 input.tar.gz
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:45 boinc_lockfile
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc      2785 Nov 25 02:45 pandaJob.out
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc    991801 Nov 25 02:49 agis_schedconf.cvmfs.json
[2025-11-26 03:49:41] drwx------. 5 boinc boinc      4096 Nov 25 02:49 pilot3
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:27 boinc_task_state.xml
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc 910887971 Nov 26 03:45 HITS.47533967._003953.pool.root.1
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc      1031 Nov 26 03:47 memory_monitor_summary.json
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc   1516240 Nov 26 03:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc   2532115 Nov 26 03:47 log.47533967._003953.job.log.tgz.1
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc      8634 Nov 26 03:49 heartbeat.json
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc      8192 Nov 26 03:49 boinc_mmap_file
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc        29 Nov 26 03:49 wrapper_checkpoint.txt
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc        95 Nov 26 03:49 pilot_heartbeat.json
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc      4884 Nov 26 03:49 pilotlog.txt
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc  11932423 Nov 26 03:49 log.47533967._003953.job.log.1
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc       353 Nov 26 03:49 output.list
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc       620 Nov 26 03:49 runtime_log
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc  14479360 Nov 26 03:49 result.tar.gz
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc      8817 Nov 26 03:49 runtime_log.err
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc       662 Nov 26 03:49 LT3LDmvleg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrNJKDmcSHiVo.diag
[2025-11-26 03:49:41] -rw-r--r--. 1 boinc boinc     21502 Nov 26 03:49 stderr.txt
[2025-11-26 03:49:41] HITS file was successfully produced:
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc 910887971 Nov 26 03:45 shared/HITS.pool.root.1
[2025-11-26 03:49:41]  *** Contents of shared directory: ***
[2025-11-26 03:49:41] total 1304236
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc 409556169 Nov 25 02:45 ATLAS.root_0
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:45 start_atlas.sh
[2025-11-26 03:49:41] -rw-r--r--. 2 boinc boinc    590106 Nov 25 02:45 input.tar.gz
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc 910887971 Nov 26 03:45 HITS.pool.root.1
[2025-11-26 03:49:41] -rw-------. 1 boinc boinc  14479360 Nov 26 03:49 result.tar.gz
03:49:43 (17577): run_atlas exited; CPU time 338081.911231
03:49:43 (17577): called boinc_finish(0)

</stderr_txt>
]]>

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