Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:00:52 (1761907): wrapper (7.7.26015): starting
14:00:52 (1761907): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 14:00:52] Arguments: --nthreads 3
[2025-11-27 14:00:52] Threads: 3
[2025-11-27 14:00:52] Checking for CVMFS
[2025-11-27 14:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:00:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:00:52] 2.9.2.0 185998 74947 102372 153364 1 81 12771305 36864000 12 130560 0 25419383 99.967 2618272 1598 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 14:00:52] CVMFS is ok
[2025-11-27 14:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:00:52] Further information can be found at the LHC@home message board.
[2025-11-27 14:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:00:52] Checking for apptainer binary...
[2025-11-27 14:00:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:00:52] Running /usr/bin/apptainer --version
[2025-11-27 14:00:52] apptainer version 1.4.1-1.1
[2025-11-27 14:00:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:00:52] thA387a
[2025-11-27 14:00:52] apptainer works
[2025-11-27 14:00:52] Set ATHENA_PROC_NUMBER=3
[2025-11-27 14:00:52] Set ATHENA_CORE_NUMBER=3
[2025-11-27 14:00:52] Starting ATLAS job with PandaID=6894289818
[2025-11-27 14:00:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:54:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | job 6894289818 has completed (purged errors)
[2025-11-27 21:54:35] 2025-11-27 20:53:57,374 | INFO     | overall cleanup function is called
[2025-11-27 21:54:35] 2025-11-27 20:53:58,383 | INFO     | --- collectZombieJob: --- 10, [1772087]
[2025-11-27 21:54:35] 2025-11-27 20:53:58,383 | INFO     | zombie collector waiting for pid 1772087
[2025-11-27 21:54:35] 2025-11-27 20:53:58,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:54:35] 2025-11-27 20:53:58,383 | INFO     | collected zombie processes
[2025-11-27 21:54:35] 2025-11-27 20:53:58,383 | INFO     | will attempt to kill all subprocesses of pid=1772087
[2025-11-27 21:54:35] 2025-11-27 20:53:58,425 | INFO     | process IDs to be killed: [1772087] (in reverse order)
[2025-11-27 21:54:35] 2025-11-27 20:53:58,448 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:54:35] 2025-11-27 20:53:58,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:54:35] 2025-11-27 20:53:58,449 | INFO     | did not find any defunct processes belonging to 1772087
[2025-11-27 21:54:35] 2025-11-27 20:53:58,450 | INFO     | did not find any defunct processes belonging to 1772087
[2025-11-27 21:54:35] 2025-11-27 20:53:58,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:54:35] 2025-11-27 20:53:58,451 | INFO     | ready for new job
[2025-11-27 21:54:35] 2025-11-27 20:53:58,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:54:35] 2025-11-27 20:53:58,452 | INFO     | ***************************************
[2025-11-27 21:54:35] 2025-11-27 20:53:58,452 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:54:35] 2025-11-27 20:53:58,452 | INFO     | ***************************************
[2025-11-27 21:54:35] 2025-11-27 20:53:58,452 | INFO     | 
[2025-11-27 21:54:35] 2025-11-27 20:53:58,453 | INFO     | architecture information:
[2025-11-27 21:54:35] 2025-11-27 20:53:58,453 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:54:35] 2025-11-27 20:53:58,461 | INFO     | cat /etc/os-release:
[2025-11-27 21:54:35] NAME="CentOS Linux"
[2025-11-27 21:54:35] VERSION="7 (Core)"
[2025-11-27 21:54:35] ID="centos"
[2025-11-27 21:54:35] ID_LIKE="rhel fedora"
[2025-11-27 21:54:35] VERSION_ID="7"
[2025-11-27 21:54:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:54:35] ANSI_COLOR="0;31"
[2025-11-27 21:54:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:54:35] HOME_URL="https://www.centos.org/"
[2025-11-27 21:54:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:54:35] 
[2025-11-27 21:54:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:54:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:54:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:54:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:54:35] 
[2025-11-27 21:54:35] 2025-11-27 20:53:58,461 | INFO     | ***************************************
[2025-11-27 21:54:35] 2025-11-27 20:53:58,964 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | INFO     | sufficient remaining disk space (241124245504 B)
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | INFO     | update_server=False
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:54:35] 2025-11-27 20:53:58,976 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:54:35] 2025-11-27 20:53:58,977 | INFO     | aborting loop
[2025-11-27 21:54:35] 2025-11-27 20:53:59,973 | INFO     | all data control threads have been joined
[2025-11-27 21:54:35] 2025-11-27 20:53:59,982 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:53:59,982 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:53:59,982 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:00,009 | INFO     | all job control threads have been joined
[2025-11-27 21:54:35] 2025-11-27 20:54:00,361 | INFO     | all payload control threads have been joined
[2025-11-27 21:54:35] 2025-11-27 20:54:00,374 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:00,872 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:00,979 | INFO     | [data] control thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:00,983 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,014 | INFO     | [job] control thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,106 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,303 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,364 | INFO     | [payload] control thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,391 | INFO     | [job] validate thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,391 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:01,444 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:02,984 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:09,500 | INFO     | job.realtimelogging is not enabled
[2025-11-27 21:54:35] 2025-11-27 20:54:10,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:54:35] 2025-11-27 20:54:29,516 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:54:35] 2025-11-27 20:54:30,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072183727936)>', '<ExcThread(monitor, started 140071567095552)>']
[2025-11-27 21:54:35] 2025-11-27 20:54:31,139 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:54:35] 2025-11-27 20:54:31,139 | INFO     | [monitor] control thread has ended
[2025-11-27 21:54:35] 2025-11-27 20:54:35,849 | INFO     | all workflow threads have been joined
[2025-11-27 21:54:35] 2025-11-27 20:54:35,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:54:35] 2025-11-27 20:54:35,849 | INFO     | traces error code: 0
[2025-11-27 21:54:35] 2025-11-27 20:54:35,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:54:35] 2025-11-27 20:54:35,901 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:54:35] 2025-11-27 20:54:35,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:54:35] 2025-11-27 20:54:35,906 [wrapper] pilotpid: 1765640
[2025-11-27 21:54:35] 2025-11-27 20:54:35,908 [wrapper] Pilot exit status: 0
[2025-11-27 21:54:35] 2025-11-27 20:54:35,915 [wrapper] pandaids: 6894289818
[2025-11-27 21:54:35] 2025-11-27 20:54:35,931 [wrapper] cleanup supervisor_pilot 1822566 1765641
[2025-11-27 21:54:35] 2025-11-27 20:54:35,933 [wrapper] Test setup, not cleaning
[2025-11-27 21:54:35] 2025-11-27 20:54:35,935 [wrapper] apfmon messages muted
[2025-11-27 21:54:35] 2025-11-27 20:54:35,938 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:54:35] 2025-11-27 20:54:35,940 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:54:35]  *** Error codes and diagnostics ***
[2025-11-27 21:54:35]     "exeErrorCode": 0,
[2025-11-27 21:54:35]     "exeErrorDiag": "",
[2025-11-27 21:54:35]     "pilotErrorCode": 0,
[2025-11-27 21:54:35]     "pilotErrorDiag": "",
[2025-11-27 21:54:35]  *** Listing of results directory ***
[2025-11-27 21:54:35] total 1319376
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc    576529 Nov 21 12:32 pilot3.tar.gz
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:37 queuedata.json
[2025-11-27 21:54:35] -rwx------ 1 boinc boinc     36292 Nov 21 12:38 runpilot2-wrapper.sh
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc       100 Nov 27 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:54:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 14:00 run_atlas
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc       105 Nov 27 14:00 job.xml
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc 408114666 Nov 27 14:00 EVNT.47493127._002417.pool.root.1
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc    590106 Nov 27 14:00 input.tar.gz
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc     15847 Nov 27 14:00 start_atlas.sh
[2025-11-27 21:54:35] drwxrwx--x 2 boinc boinc      4096 Nov 27 14:00 shared
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc         0 Nov 27 14:00 boinc_setup_complete
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc      6441 Nov 27 14:00 init_data.xml
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc         0 Nov 27 14:00 boinc_lockfile
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc      2785 Nov 27 14:00 pandaJob.out
[2025-11-27 21:54:35] -rw------- 1 boinc boinc    991566 Nov 27 14:00 agis_schedconf.cvmfs.json
[2025-11-27 21:54:35] drwx------ 5 boinc boinc      4096 Nov 27 14:00 pilot3
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc       532 Nov 27 21:49 boinc_task_state.xml
[2025-11-27 21:54:35] -rw------- 1 boinc boinc        95 Nov 27 21:53 pilot_heartbeat.json
[2025-11-27 21:54:35] -rw------- 1 boinc boinc 928696500 Nov 27 21:53 HITS.47533967._003882.pool.root.1
[2025-11-27 21:54:35] -rw------- 1 boinc boinc      1028 Nov 27 21:53 memory_monitor_summary.json
[2025-11-27 21:54:35] -rw------- 1 boinc boinc   1516240 Nov 27 21:53 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:54:35] -rw------- 1 boinc boinc   1162446 Nov 27 21:53 log.47533967._003882.job.log.tgz.1
[2025-11-27 21:54:35] -rw------- 1 boinc boinc      8570 Nov 27 21:53 heartbeat.json
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc      8192 Nov 27 21:54 boinc_mmap_file
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc        28 Nov 27 21:54 wrapper_checkpoint.txt
[2025-11-27 21:54:35] -rw------- 1 boinc boinc      4628 Nov 27 21:54 pilotlog.txt
[2025-11-27 21:54:35] -rw------- 1 boinc boinc   3996494 Nov 27 21:54 log.47533967._003882.job.log.1
[2025-11-27 21:54:35] -rw------- 1 boinc boinc       353 Nov 27 21:54 output.list
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc       620 Nov 27 21:54 runtime_log
[2025-11-27 21:54:35] -rw------- 1 boinc boinc   5181440 Nov 27 21:54 result.tar.gz
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc      8903 Nov 27 21:54 runtime_log.err
[2025-11-27 21:54:35] -rw------- 1 boinc boinc       666 Nov 27 21:54 SStNDmtdeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0ZHKDm7JBDsm.diag
[2025-11-27 21:54:35] -rw-r--r-- 1 boinc boinc     12385 Nov 27 21:54 stderr.txt
[2025-11-27 21:54:35] HITS file was successfully produced:
[2025-11-27 21:54:35] -rw------- 1 boinc boinc 928696500 Nov 27 21:53 shared/HITS.pool.root.1
[2025-11-27 21:54:35]  *** Contents of shared directory: ***
[2025-11-27 21:54:35] total 1311148
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc 408114666 Nov 27 14:00 ATLAS.root_0
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc    590106 Nov 27 14:00 input.tar.gz
[2025-11-27 21:54:35] -rw-r--r-- 2 boinc boinc     15847 Nov 27 14:00 start_atlas.sh
[2025-11-27 21:54:35] -rw------- 1 boinc boinc 928696500 Nov 27 21:53 HITS.pool.root.1
[2025-11-27 21:54:35] -rw------- 1 boinc boinc   5181440 Nov 27 21:54 result.tar.gz
21:54:37 (1761907): run_atlas exited; CPU time 83611.694009
21:54:37 (1761907): called boinc_finish(0)

</stderr_txt>
]]>

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