Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:04:48 (9297): wrapper (7.7.26015): starting
01:04:48 (9297): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:04:48] Arguments: --nthreads 8
[2025-11-25 01:04:48] Threads: 8
[2025-11-25 01:04:48] Checking for CVMFS
[2025-11-25 01:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:04:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:04:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:04:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:04:52] 2.11.2.0 31738 283022 137972 153263 0 85 17580450 25165824 1060 130560 10 121798892 99.871 79452235 2820 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 01:04:52] CVMFS is ok
[2025-11-25 01:04:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:04:52] Checking for apptainer binary...
[2025-11-25 01:04:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:04:52] Running /usr/bin/apptainer --version
[2025-11-25 01:04:52] apptainer version 1.3.2-1.el7
[2025-11-25 01:04:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:05:02] cg-vwn375.simple-grid.lan
[2025-11-25 01:05:02] apptainer works
[2025-11-25 01:05:02] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:05:02] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:05:02] Starting ATLAS job with PandaID=6894289723
[2025-11-25 01:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:21:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:21:05] 2025-11-25 20:20:21,801 | INFO     | monitor loop #4930: job 0:6894289723 is in state 'finished'
[2025-11-25 21:21:05] 2025-11-25 20:20:21,801 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:21:05] 2025-11-25 20:20:23,375 | INFO     | time since job start (72643s) is within the limit (172800.0s)
[2025-11-25 21:21:05] 2025-11-25 20:20:24,310 | INFO     | monitor loop #4931: job 0:6894289723 is in state 'finished'
[2025-11-25 21:21:05] 2025-11-25 20:20:24,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:21:05] 2025-11-25 20:20:25,385 | INFO     | time since job start (72645s) is within the limit (172800.0s)
[2025-11-25 21:21:05] 2025-11-25 20:20:26,822 | INFO     | monitor loop #4932: job 0:6894289723 is in state 'finished'
[2025-11-25 21:21:05] 2025-11-25 20:20:26,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:21:05] 2025-11-25 20:20:27,391 | INFO     | time since job start (72647s) is within the limit (172800.0s)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,182 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:21:05] 2025-11-25 20:20:29,185 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 21:21:05] 2025-11-25 20:20:29,187 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6894289723/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,188 | INFO     | extracted standard info from prmon json
[2025-11-25 21:21:05] 2025-11-25 20:20:29,188 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:21:05] 2025-11-25 20:20:29,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:21:05] 2025-11-25 20:20:29,228 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:21:05] 2025-11-25 20:20:29,231 | INFO     | sum of square deviations: 509489583787.35187
[2025-11-25 21:21:05] 2025-11-25 20:20:29,272 | INFO     | sum of deviations: 2341537498596.766
[2025-11-25 21:21:05] 2025-11-25 20:20:29,272 | INFO     | mean x: 1764065923.5805085
[2025-11-25 21:21:05] 2025-11-25 20:20:29,272 | INFO     | mean y: 2831525.528813559
[2025-11-25 21:21:05] 2025-11-25 20:20:29,272 | INFO     | intersect: -8104550139.381763
[2025-11-25 21:21:05] 2025-11-25 20:20:29,274 | INFO     | chi2: 30.565510161907795
[2025-11-25 21:21:05] 2025-11-25 20:20:29,276 | INFO     | sum of square deviations: 503040977321.4893
[2025-11-25 21:21:05] 2025-11-25 20:20:29,313 | INFO     | sum of deviations: 2723731245637.387
[2025-11-25 21:21:05] 2025-11-25 20:20:29,314 | INFO     | mean x: 1764065771.0851064
[2025-11-25 21:21:05] 2025-11-25 20:20:29,314 | INFO     | mean y: 2840561.6161702126
[2025-11-25 21:21:05] 2025-11-25 20:20:29,314 | INFO     | intersect: -9548749222.67526
[2025-11-25 21:21:05] 2025-11-25 20:20:29,316 | INFO     | chi2: 27.448986123454866
[2025-11-25 21:21:05] 2025-11-25 20:20:29,316 | INFO     | current chi2=27.448986123454866 (change=10.196211422431587 %)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,316 | INFO     | right removable region: 1174
[2025-11-25 21:21:05] 2025-11-25 20:20:29,318 | INFO     | sum of square deviations: 503040199571.4888
[2025-11-25 21:21:05] 2025-11-25 20:20:29,330 | INFO     | monitor loop #4933: job 0:6894289723 is in state 'finished'
[2025-11-25 21:21:05] 2025-11-25 20:20:29,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,363 | INFO     | sum of deviations: 1836548088191.979
[2025-11-25 21:21:05] 2025-11-25 20:20:29,364 | INFO     | mean x: 1764066076.0851064
[2025-11-25 21:21:05] 2025-11-25 20:20:29,364 | INFO     | mean y: 2843466.490212766
[2025-11-25 21:21:05] 2025-11-25 20:20:29,364 | INFO     | intersect: -6437580543.833858
[2025-11-25 21:21:05] 2025-11-25 20:20:29,365 | INFO     | chi2: 25.468242288608142
[2025-11-25 21:21:05] 2025-11-25 20:20:29,366 | INFO     | current chi2=25.468242288608142 (change=16.676534585220544 %)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,366 | INFO     | left removable region: 10
[2025-11-25 21:21:05] 2025-11-25 20:20:29,368 | INFO     | sum of square deviations: 489044535848.4161
[2025-11-25 21:21:05] 2025-11-25 20:20:29,405 | INFO     | sum of deviations: 1840025009468.48
[2025-11-25 21:21:05] 2025-11-25 20:20:29,406 | INFO     | mean x: 1764066045.5953608
[2025-11-25 21:21:05] 2025-11-25 20:20:29,406 | INFO     | mean y: 2865524.97766323
[2025-11-25 21:21:05] 2025-11-25 20:20:29,406 | INFO     | intersect: -6634414731.34593
[2025-11-25 21:21:05] 2025-11-25 20:20:29,407 | INFO     | chi2: 17.552102686595262
[2025-11-25 21:21:05] 2025-11-25 20:20:29,408 | INFO     | current memory leak: 3.76 B/s (using 1164 data points, chi2=17.55)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | ..............................
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | . Timing measurements:
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | . get job = 0 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | . initial setup = 20 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,411 | INFO     | . payload setup = 196 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,412 | INFO     | . stage-in = 0 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,412 | INFO     | . payload execution = 72121 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,412 | INFO     | . stage-out = 5 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,412 | INFO     | . log creation = 2 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,412 | INFO     | ..............................
[2025-11-25 21:21:05] 2025-11-25 20:20:29,414 | INFO     | time since job start (72649s) is within the limit (172800.0s)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | 
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | job summary report
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | --------------------------------------------------
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | PanDA job id: 6894289723
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | task id: 47533967
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | errors: (none)
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:21:05] 2025-11-25 20:20:29,993 | INFO     | pilot state: finished 
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | transexitcode: 0
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | exeerrorcode: 0
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | exeerrordiag: 
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | exitcode: 0
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | exitmsg: OK
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | cpuconsumptiontime: 331492 s
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | nevents: 1000
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | neventsw: 0
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | pid: 19500
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | pgrp: 19500
[2025-11-25 21:21:05] 2025-11-25 20:20:29,994 | INFO     | corecount: 8
[2025-11-25 21:21:05] 2025-11-25 20:20:29,995 | INFO     | event service: False
[2025-11-25 21:21:05] 2025-11-25 20:20:29,995 | INFO     | sizes: {0: 2284032, 1: 2284116, 2: 2284315, 13: 2284315, 24: 2284371, 34: 2284399, 45: 2284555, 56: 2284583, 67: 2284611, 78: 2284639, 88: 2284695, 99: 2285003, 11
[2025-11-25 21:21:05] 2025-11-25 20:20:29,995 | INFO     | --------------------------------------------------
[2025-11-25 21:21:05] 2025-11-25 20:20:29,995 | INFO     | 
[2025-11-25 21:21:05] 2025-11-25 20:20:29,995 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 21:21:05] 2025-11-25 20:20:30,638 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:21:05] 2025-11-25 20:20:30,654 | INFO     | job 6894289723 has completed (purged errors)
[2025-11-25 21:21:05] 2025-11-25 20:20:30,654 | INFO     | overall cleanup function is called
[2025-11-25 21:21:05] 2025-11-25 20:20:30,652 | INFO     | PID=13023 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:21:05] 2025-11-25 20:20:30,666 | INFO     | .. there are 9 such processes running
[2025-11-25 21:21:05] 2025-11-25 20:20:31,672 | INFO     | --- collectZombieJob: --- 10, [19500]
[2025-11-25 21:21:05] 2025-11-25 20:20:31,672 | INFO     | zombie collector waiting for pid 19500
[2025-11-25 21:21:05] 2025-11-25 20:20:31,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:21:05] 2025-11-25 20:20:31,672 | INFO     | collected zombie processes
[2025-11-25 21:21:05] 2025-11-25 20:20:31,672 | INFO     | will attempt to kill all subprocesses of pid=19500
[2025-11-25 21:21:05] 2025-11-25 20:20:31,792 | INFO     | process IDs to be killed: [19500] (in reverse order)
[2025-11-25 21:21:05] 2025-11-25 20:20:32,940 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:21:05] 2025-11-25 20:20:32,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:21:05] 2025-11-25 20:20:32,944 | INFO     | did not find any defunct processes belonging to 19500
[2025-11-25 21:21:05] 2025-11-25 20:20:32,948 | INFO     | did not find any defunct processes belonging to 19500
[2025-11-25 21:21:05] 2025-11-25 20:20:33,007 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:21:05] 2025-11-25 20:20:33,007 | INFO     | ready for new job
[2025-11-25 21:21:05] 2025-11-25 20:20:33,008 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:21:05] 2025-11-25 20:20:33,014 | INFO     | ***************************************
[2025-11-25 21:21:05] 2025-11-25 20:20:33,014 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:21:05] 2025-11-25 20:20:33,014 | INFO     | ***************************************
[2025-11-25 21:21:05] 2025-11-25 20:20:33,014 | INFO     | 
[2025-11-25 21:21:05] 2025-11-25 20:20:33,015 | INFO     | pilot is running in a VM
[2025-11-25 21:21:05] 2025-11-25 20:20:33,015 | INFO     | architecture information:
[2025-11-25 21:21:05] 2025-11-25 20:20:33,029 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:21:05] 2025-11-25 20:20:33,170 | INFO     | cat /etc/os-release:
[2025-11-25 21:21:05] NAME="CentOS Linux"
[2025-11-25 21:21:05] VERSION="7 (Core)"
[2025-11-25 21:21:05] ID="centos"
[2025-11-25 21:21:05] ID_LIKE="rhel fedora"
[2025-11-25 21:21:05] VERSION_ID="7"
[2025-11-25 21:21:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:21:05] ANSI_COLOR="0;31"
[2025-11-25 21:21:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:21:05] HOME_URL="https://www.centos.org/"
[2025-11-25 21:21:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:21:05] 
[2025-11-25 21:21:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:21:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:21:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:21:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:21:05] 
[2025-11-25 21:21:05] 2025-11-25 20:20:33,171 | INFO     | ***************************************
[2025-11-25 21:21:05] 2025-11-25 20:20:33,675 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 21:21:05] 2025-11-25 20:20:33,871 | INFO     | sufficient remaining disk space (494739128320 B)
[2025-11-25 21:21:05] 2025-11-25 20:20:33,872 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:21:05] 2025-11-25 20:20:33,872 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:21:05] 2025-11-25 20:20:33,872 | INFO     | update_server=False
[2025-11-25 21:21:05] 2025-11-25 20:20:33,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:21:05] 2025-11-25 20:20:33,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:21:05] 2025-11-25 20:20:33,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:21:05] 2025-11-25 20:20:33,961 | INFO     | all data control threads have been joined
[2025-11-25 21:21:05] 2025-11-25 20:20:34,018 | INFO     | all payload control threads have been joined
[2025-11-25 21:21:05] 2025-11-25 20:20:34,155 | INFO     | all job control threads have been joined
[2025-11-25 21:21:05] 2025-11-25 20:20:34,350 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 21:21:05] 2025-11-25 20:20:34,350 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 21:21:05] 2025-11-25 20:20:34,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:21:05] 2025-11-25 20:20:34,351 | INFO     | will abort loop
[2025-11-25 21:21:05] 2025-11-25 20:20:34,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:21:05] 2025-11-25 20:20:34,878 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:34,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:34,967 | INFO     | [data] control thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,024 | INFO     | [payload] control thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,161 | INFO     | [job] control thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,357 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,591 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,647 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,851 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,880 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,893 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,919 | INFO     | [job] validate thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:35,983 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:36,013 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:36,167 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:37,968 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:21:05] 2025-11-25 20:20:45,628 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:21:05] 2025-11-25 20:20:45,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793804379968)>', '<ExcThread(monitor, started 139793350498048)>']
[2025-11-25 21:21:05] 2025-11-25 20:20:50,945 | INFO     | all workflow threads have been joined
[2025-11-25 21:21:05] 2025-11-25 20:20:50,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:21:05] 2025-11-25 20:20:50,946 | INFO     | traces error code: 0
[2025-11-25 21:21:05] 2025-11-25 20:20:50,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:21:05] 2025-11-25 20:21:02,832 | INFO     | PID=13023 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | INFO     | .. there are 9 such processes running
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:21:05] 2025-11-25 20:21:02,833 | INFO     | [monitor] control thread has ended
[2025-11-25 21:21:05] 2025-11-25 20:21:03,237 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:21:05] 2025-11-25 20:21:03,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:21:05] 2025-11-25 20:21:03,406 [wrapper] pilotpid: 13023
[2025-11-25 21:21:05] 2025-11-25 20:21:03,514 [wrapper] Pilot exit status: 0
[2025-11-25 21:21:05] 2025-11-25 20:21:03,659 [wrapper] pandaids: 6894289723
[2025-11-25 21:21:05] 2025-11-25 20:21:03,781 [wrapper] cleanup supervisor_pilot 18988 13024
[2025-11-25 21:21:05] 2025-11-25 20:21:03,860 [wrapper] Test setup, not cleaning
[2025-11-25 21:21:05] 2025-11-25 20:21:03,924 [wrapper] apfmon messages muted
[2025-11-25 21:21:05] 2025-11-25 20:21:03,993 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:21:05] 2025-11-25 20:21:04,099 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:21:05]  *** Error codes and diagnostics ***
[2025-11-25 21:21:05]     "exeErrorCode": 0,
[2025-11-25 21:21:05]     "exeErrorDiag": "",
[2025-11-25 21:21:05]     "pilotErrorCode": 0,
[2025-11-25 21:21:05]     "pilotErrorDiag": "",
[2025-11-25 21:21:05]  *** Listing of results directory ***
[2025-11-25 21:21:05] total 1324188
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:23 pilot3.tar.gz
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:31 queuedata.json
[2025-11-25 21:21:05] -rwx------. 1 boinc boinc     36292 Nov 21 12:32 runpilot2-wrapper.sh
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc       100 Nov 25 01:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:21:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 01:04 run_atlas
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc       105 Nov 25 01:04 job.xml
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc 410295751 Nov 25 01:04 EVNT.47493127._002412.pool.root.1
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc      6392 Nov 25 01:04 init_data.xml
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:04 start_atlas.sh
[2025-11-25 21:21:05] drwxrwx--x. 2 boinc boinc        68 Nov 25 01:04 shared
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc    590107 Nov 25 01:04 input.tar.gz
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc         0 Nov 25 01:04 boinc_lockfile
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc      2785 Nov 25 01:05 pandaJob.out
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc    991801 Nov 25 01:09 agis_schedconf.cvmfs.json
[2025-11-25 21:21:05] drwx------. 5 boinc boinc      4096 Nov 25 01:09 pilot3
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc       533 Nov 25 20:53 boinc_task_state.xml
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc 917642030 Nov 25 21:17 HITS.47533967._003835.pool.root.1
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc      1036 Nov 25 21:18 memory_monitor_summary.json
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc   1516240 Nov 25 21:18 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc   2335484 Nov 25 21:18 log.47533967._003835.job.log.tgz.1
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc        95 Nov 25 21:20 pilot_heartbeat.json
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc      7950 Nov 25 21:20 heartbeat.json
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:20 boinc_mmap_file
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc        29 Nov 25 21:20 wrapper_checkpoint.txt
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc       820 Nov 25 21:21 pilotlog.txt
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc   9733172 Nov 25 21:21 log.47533967._003835.job.log.1
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc       353 Nov 25 21:21 output.list
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:21 runtime_log
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc  12083200 Nov 25 21:21 result.tar.gz
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc      8817 Nov 25 21:21 runtime_log.err
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc       661 Nov 25 21:21 aG9LDm7Xeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuLJKDmZGiHdm.diag
[2025-11-25 21:21:05] -rw-r--r--. 1 boinc boinc     21489 Nov 25 21:21 stderr.txt
[2025-11-25 21:21:05] HITS file was successfully produced:
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc 917642030 Nov 25 21:17 shared/HITS.pool.root.1
[2025-11-25 21:21:05]  *** Contents of shared directory: ***
[2025-11-25 21:21:05] total 1309212
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc 410295751 Nov 25 01:04 ATLAS.root_0
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc     15847 Nov 25 01:04 start_atlas.sh
[2025-11-25 21:21:05] -rw-r--r--. 2 boinc boinc    590107 Nov 25 01:04 input.tar.gz
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc 917642030 Nov 25 21:17 HITS.pool.root.1
[2025-11-25 21:21:05] -rw-------. 1 boinc boinc  12083200 Nov 25 21:21 result.tar.gz
21:21:07 (9297): run_atlas exited; CPU time 331732.529800
21:21:07 (9297): called boinc_finish(0)

</stderr_txt>
]]>

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