Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:36:09 (1412): wrapper (7.7.26015): starting
01:36:09 (1412): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 01:36:09] Arguments: --nthreads 12
[2025-11-22 01:36:09] Threads: 12
[2025-11-22 01:36:09] Checking for CVMFS
[2025-11-22 01:36:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:36:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:36:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:36:09] 2.11.2.0 3035 281523 93104 153162 2 81 10698701 20275201 1 130560 3 126385997 99.968 16891403 14156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 01:36:09] CVMFS is ok
[2025-11-22 01:36:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:36:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:36:09] Further information can be found at the LHC@home message board.
[2025-11-22 01:36:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:36:09] Checking for apptainer binary...
[2025-11-22 01:36:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:36:09] Running /usr/bin/apptainer --version
[2025-11-22 01:36:09] apptainer version 1.3.2-1.el7
[2025-11-22 01:36:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:36:11] c-205-31.aglt2.org
[2025-11-22 01:36:11] apptainer works
[2025-11-22 01:36:11] Set ATHENA_PROC_NUMBER=12
[2025-11-22 01:36:11] Set ATHENA_CORE_NUMBER=12
[2025-11-22 01:36:11] Starting ATLAS job with PandaID=6894262120
[2025-11-22 01:36:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:47:34]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:47:34] 2025-11-22 13:47:01,590 | INFO     | monitor loop #1938: job 0:6894262120 is in state 'finished'
[2025-11-22 08:47:34] 2025-11-22 13:47:01,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,928 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 08:47:34] 2025-11-22 13:47:01,932 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-22 08:47:34] 2025-11-22 13:47:01,934 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894262120/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,935 | INFO     | extracted standard info from prmon json
[2025-11-22 08:47:34] 2025-11-22 13:47:01,935 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:47:34] 2025-11-22 13:47:01,935 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:47:34] 2025-11-22 13:47:01,942 | INFO     | fitting pss+swap vs Time
[2025-11-22 08:47:34] 2025-11-22 13:47:01,942 | INFO     | sum of square deviations: 23468880454.85103
[2025-11-22 08:47:34] 2025-11-22 13:47:01,946 | INFO     | sum of deviations: 368473211644.55316
[2025-11-22 08:47:34] 2025-11-22 13:47:01,946 | INFO     | mean x: 1763806286.212766
[2025-11-22 08:47:34] 2025-11-22 13:47:01,946 | INFO     | mean y: 3433961.638297872
[2025-11-22 08:47:34] 2025-11-22 13:47:01,947 | INFO     | intersect: -27689210698.1683
[2025-11-22 08:47:34] 2025-11-22 13:47:01,947 | INFO     | chi2: 5.4342915971861725
[2025-11-22 08:47:34] 2025-11-22 13:47:01,948 | INFO     | sum of square deviations: 22646464577.121773
[2025-11-22 08:47:34] 2025-11-22 13:47:01,952 | INFO     | sum of deviations: 518498615001.457
[2025-11-22 08:47:34] 2025-11-22 13:47:01,952 | INFO     | mean x: 1763806133.715311
[2025-11-22 08:47:34] 2025-11-22 13:47:01,952 | INFO     | mean y: 3461751.600478469
[2025-11-22 08:47:34] 2025-11-22 13:47:01,952 | INFO     | intersect: -40379487840.73252
[2025-11-22 08:47:34] 2025-11-22 13:47:01,952 | INFO     | chi2: 2.804817566735365
[2025-11-22 08:47:34] 2025-11-22 13:47:01,953 | INFO     | current chi2=2.804817566735365 (change=48.386693710222055 %)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,953 | INFO     | sum of square deviations: 21843490924.387356
[2025-11-22 08:47:34] 2025-11-22 13:47:01,957 | INFO     | sum of deviations: 562903135780.2471
[2025-11-22 08:47:34] 2025-11-22 13:47:01,957 | INFO     | mean x: 1763805981.2179177
[2025-11-22 08:47:34] 2025-11-22 13:47:01,957 | INFO     | mean y: 3470132.263922518
[2025-11-22 08:47:34] 2025-11-22 13:47:01,957 | INFO     | intersect: -45449517266.69817
[2025-11-22 08:47:34] 2025-11-22 13:47:01,958 | INFO     | chi2: 2.31462581767563
[2025-11-22 08:47:34] 2025-11-22 13:47:01,958 | INFO     | current chi2=2.31462581767563 (change=17.476778342852736 %)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,958 | INFO     | right removable region: 412
[2025-11-22 08:47:34] 2025-11-22 13:47:01,958 | INFO     | sum of square deviations: 22646409677.121773
[2025-11-22 08:47:34] 2025-11-22 13:47:01,962 | INFO     | sum of deviations: 238042501107.29208
[2025-11-22 08:47:34] 2025-11-22 13:47:01,962 | INFO     | mean x: 1763806438.715311
[2025-11-22 08:47:34] 2025-11-22 13:47:01,962 | INFO     | mean y: 3458058.985645933
[2025-11-22 08:47:34] 2025-11-22 13:47:01,962 | INFO     | intersect: -18536385656.95212
[2025-11-22 08:47:34] 2025-11-22 13:47:01,963 | INFO     | chi2: 3.2558692162280667
[2025-11-22 08:47:34] 2025-11-22 13:47:01,963 | INFO     | current chi2=3.2558692162280667 (change=40.086593477723454 %)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,964 | INFO     | sum of square deviations: 21843457250.673122
[2025-11-22 08:47:34] 2025-11-22 13:47:01,967 | INFO     | sum of deviations: 206185745846.99545
[2025-11-22 08:47:34] 2025-11-22 13:47:01,967 | INFO     | mean x: 1763806591.2106538
[2025-11-22 08:47:34] 2025-11-22 13:47:01,967 | INFO     | mean y: 3464102.092009685
[2025-11-22 08:47:34] 2025-11-22 13:47:01,968 | INFO     | intersect: -16645538542.734667
[2025-11-22 08:47:34] 2025-11-22 13:47:01,968 | INFO     | chi2: 3.204895846444229
[2025-11-22 08:47:34] 2025-11-22 13:47:01,968 | INFO     | current chi2=3.204895846444229 (change=1.565584069832218 %)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,968 | INFO     | left removable region: 20
[2025-11-22 08:47:34] 2025-11-22 13:47:01,969 | INFO     | sum of square deviations: 18678041708.846813
[2025-11-22 08:47:34] 2025-11-22 13:47:01,972 | INFO     | sum of deviations: 359884953066.0359
[2025-11-22 08:47:34] 2025-11-22 13:47:01,972 | INFO     | mean x: 1763806560.7091837
[2025-11-22 08:47:34] 2025-11-22 13:47:01,972 | INFO     | mean y: 3509324.0178571427
[2025-11-22 08:47:34] 2025-11-22 13:47:01,972 | INFO     | intersect: -33981179821.29734
[2025-11-22 08:47:34] 2025-11-22 13:47:01,973 | INFO     | chi2: 0.04448119593219809
[2025-11-22 08:47:34] 2025-11-22 13:47:01,973 | INFO     | current memory leak: 19.27 B/s (using 392 data points, chi2=0.04)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,973 | INFO     | could have reported an average CPU frequency of 2410 MHz (18 samples)
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | ..............................
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . Timing measurements:
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . get job = 0 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . initial setup = 2 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . payload setup = 7 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . stage-in = 0 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . payload execution = 25793 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . stage-out = 3 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | . log creation = 0 s
[2025-11-22 08:47:34] 2025-11-22 13:47:01,974 | INFO     | ..............................
[2025-11-22 08:47:34] 2025-11-22 13:47:02,213 | INFO     | 
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | job summary report
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | --------------------------------------------------
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | PanDA job id: 6894262120
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | task id: 47533967
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | errors: (none)
[2025-11-22 08:47:34] 2025-11-22 13:47:02,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | pilot state: finished 
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | transexitcode: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | exeerrorcode: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | exeerrordiag: 
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | exitcode: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:02,215 | INFO     | exitmsg: OK
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | cpuconsumptiontime: 295880 s
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | nevents: 1000
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | neventsw: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | pid: 11646
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | pgrp: 11646
[2025-11-22 08:47:34] 2025-11-22 13:47:02,216 | INFO     | corecount: 12
[2025-11-22 08:47:34] 2025-11-22 13:47:02,217 | INFO     | event service: False
[2025-11-22 08:47:34] 2025-11-22 13:47:02,217 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 25805: 2336362, 25810: 2345356, 25813: 2345412, 25820: 2345786}
[2025-11-22 08:47:34] 2025-11-22 13:47:02,217 | INFO     | --------------------------------------------------
[2025-11-22 08:47:34] 2025-11-22 13:47:02,217 | INFO     | 
[2025-11-22 08:47:34] 2025-11-22 13:47:02,217 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 08:47:34] 2025-11-22 13:47:02,242 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,242 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,242 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,244 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | job 6894262120 has completed (purged errors)
[2025-11-22 08:47:34] 2025-11-22 13:47:02,245 | INFO     | overall cleanup function is called
[2025-11-22 08:47:34] 2025-11-22 13:47:03,260 | INFO     | --- collectZombieJob: --- 10, [11646]
[2025-11-22 08:47:34] 2025-11-22 13:47:03,260 | INFO     | zombie collector waiting for pid 11646
[2025-11-22 08:47:34] 2025-11-22 13:47:03,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:47:34] 2025-11-22 13:47:03,260 | INFO     | collected zombie processes
[2025-11-22 08:47:34] 2025-11-22 13:47:03,261 | INFO     | will attempt to kill all subprocesses of pid=11646
[2025-11-22 08:47:34] 2025-11-22 13:47:03,349 | INFO     | process IDs to be killed: [11646] (in reverse order)
[2025-11-22 08:47:34] 2025-11-22 13:47:03,401 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:47:34] 2025-11-22 13:47:03,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:47:34] 2025-11-22 13:47:03,405 | INFO     | did not find any defunct processes belonging to 11646
[2025-11-22 08:47:34] 2025-11-22 13:47:03,407 | INFO     | did not find any defunct processes belonging to 11646
[2025-11-22 08:47:34] 2025-11-22 13:47:03,409 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:47:34] 2025-11-22 13:47:03,409 | INFO     | ready for new job
[2025-11-22 08:47:34] 2025-11-22 13:47:03,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:47:34] 2025-11-22 13:47:03,411 | INFO     | ***************************************
[2025-11-22 08:47:34] 2025-11-22 13:47:03,412 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:47:34] 2025-11-22 13:47:03,412 | INFO     | ***************************************
[2025-11-22 08:47:34] 2025-11-22 13:47:03,412 | INFO     | 
[2025-11-22 08:47:34] 2025-11-22 13:47:03,412 | INFO     | architecture information:
[2025-11-22 08:47:34] 2025-11-22 13:47:03,413 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:47:34] 2025-11-22 13:47:03,428 | INFO     | cat /etc/os-release:
[2025-11-22 08:47:34] NAME="CentOS Linux"
[2025-11-22 08:47:34] VERSION="7 (Core)"
[2025-11-22 08:47:34] ID="centos"
[2025-11-22 08:47:34] ID_LIKE="rhel fedora"
[2025-11-22 08:47:34] VERSION_ID="7"
[2025-11-22 08:47:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:47:34] ANSI_COLOR="0;31"
[2025-11-22 08:47:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:47:34] HOME_URL="https://www.centos.org/"
[2025-11-22 08:47:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:47:34] 
[2025-11-22 08:47:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:47:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:47:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:47:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:47:34] 
[2025-11-22 08:47:34] 2025-11-22 13:47:03,429 | INFO     | ***************************************
[2025-11-22 08:47:34] 2025-11-22 13:47:03,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 08:47:34] 2025-11-22 13:47:03,949 | INFO     | sufficient remaining disk space (28242345984 B)
[2025-11-22 08:47:34] 2025-11-22 13:47:03,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:47:34] 2025-11-22 13:47:03,950 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:47:34] 2025-11-22 13:47:03,950 | INFO     | update_server=False
[2025-11-22 08:47:34] 2025-11-22 13:47:03,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:47:34] 2025-11-22 13:47:03,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:47:34] 2025-11-22 13:47:03,993 | INFO     | all payload control threads have been joined
[2025-11-22 08:47:34] 2025-11-22 13:47:04,107 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 08:47:34] 2025-11-22 13:47:04,108 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 08:47:34] 2025-11-22 13:47:04,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:47:34] 2025-11-22 13:47:04,108 | INFO     | will abort loop
[2025-11-22 08:47:34] 2025-11-22 13:47:04,516 | INFO     | all data control threads have been joined
[2025-11-22 08:47:34] 2025-11-22 13:47:04,955 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:04,956 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:04,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:47:34] 2025-11-22 13:47:04,999 | INFO     | [payload] control thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:05,066 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:05,114 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:05,506 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:05,521 | INFO     | [data] control thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:05,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:47:34] 2025-11-22 13:47:05,637 | INFO     | all job control threads have been joined
[2025-11-22 08:47:34] 2025-11-22 13:47:05,846 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,008 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,012 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,147 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,289 | INFO     | [job] validate thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,296 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,642 | INFO     | [job] control thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:06,998 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:07,846 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:47:34] 2025-11-22 13:47:09,593 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:47:34] 2025-11-22 13:47:09,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494544324416)>', '<ExcThread(monitor, started 140493790889728)>']
[2025-11-22 08:47:34] 2025-11-22 13:47:14,705 | INFO     | all workflow threads have been joined
[2025-11-22 08:47:34] 2025-11-22 13:47:14,705 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:47:34] 2025-11-22 13:47:14,705 | INFO     | traces error code: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:14,706 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:47:34] 2025-11-22 13:47:34,029 | INFO     | PID=5280 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 08:47:34] 2025-11-22 13:47:34,029 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:47:34] 2025-11-22 13:47:34,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:47:34] 2025-11-22 13:47:34,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:47:34] 2025-11-22 13:47:34,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:47:34] 2025-11-22 13:47:34,030 | INFO     | [monitor] control thread has ended
[2025-11-22 08:47:34] 2025-11-22 13:47:34,120 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:47:34] 2025-11-22 13:47:34,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:47:34] 2025-11-22 13:47:34,127 [wrapper] pilotpid: 5280
[2025-11-22 08:47:34] 2025-11-22 13:47:34,131 [wrapper] Pilot exit status: 0
[2025-11-22 08:47:34] 2025-11-22 13:47:34,144 [wrapper] pandaids: 6894262120
[2025-11-22 08:47:34] 2025-11-22 13:47:34,182 [wrapper] cleanup supervisor_pilot 24913 5281
[2025-11-22 08:47:34] 2025-11-22 13:47:34,186 [wrapper] Test setup, not cleaning
[2025-11-22 08:47:34] 2025-11-22 13:47:34,190 [wrapper] apfmon messages muted
[2025-11-22 08:47:34] 2025-11-22 13:47:34,193 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:47:34] 2025-11-22 13:47:34,197 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:47:34]  *** Error codes and diagnostics ***
[2025-11-22 08:47:34]     "exeErrorCode": 0,
[2025-11-22 08:47:34]     "exeErrorDiag": "",
[2025-11-22 08:47:34]     "pilotErrorCode": 0,
[2025-11-22 08:47:34]     "pilotErrorDiag": "",
[2025-11-22 08:47:34]  *** Listing of results directory ***
[2025-11-22 08:47:34] total 1317828
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 23:12 pilot3.tar.gz
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 23:51 queuedata.json
[2025-11-22 08:47:34] -rwx------ 1 boincer umatlas     36292 Nov 20 23:51 runpilot2-wrapper.sh
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas       100 Nov 22 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:47:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 01:36 run_atlas
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas       105 Nov 22 01:36 job.xml
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas 412087694 Nov 22 01:36 EVNT.47493127._002199.pool.root.1
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:36 start_atlas.sh
[2025-11-22 08:47:34] drwxrwx--x 2 boincer umatlas      4096 Nov 22 01:36 shared
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 01:36 input.tar.gz
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas         0 Nov 22 01:36 boinc_lockfile
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 01:36 pandaJob.out
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas        57 Nov 22 01:36 setup.sh.local
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas    989752 Nov 22 01:36 agis_schedconf.cvmfs.json
[2025-11-22 08:47:34] drwx------ 5 boincer umatlas      4096 Nov 22 01:36 pilot3
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas       532 Nov 22 08:37 boinc_task_state.xml
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 08:45 init_data.xml
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas 921883424 Nov 22 08:46 HITS.47533967._001707.pool.root.1
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas      1064 Nov 22 08:46 memory_monitor_summary.json
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas   1526164 Nov 22 08:46 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas   2167688 Nov 22 08:46 log.47533967._001707.job.log.tgz.1
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas      8669 Nov 22 08:47 heartbeat.json
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 08:47 boinc_mmap_file
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas        29 Nov 22 08:47 wrapper_checkpoint.txt
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas        95 Nov 22 08:47 pilot_heartbeat.json
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas       744 Nov 22 08:47 pilotlog.txt
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas   3613301 Nov 22 08:47 log.47533967._001707.job.log.1
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas       353 Nov 22 08:47 output.list
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas       620 Nov 22 08:47 runtime_log
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas   5795840 Nov 22 08:47 result.tar.gz
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas       670 Nov 22 08:47 WdmMDmdIYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi2IKDmDKxPHn.diag
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 08:47 runtime_log.err
[2025-11-22 08:47:34] -rw-r--r-- 1 boincer umatlas     21291 Nov 22 08:47 stderr.txt
[2025-11-22 08:47:34] HITS file was successfully produced:
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas 921883424 Nov 22 08:46 shared/HITS.pool.root.1
[2025-11-22 08:47:34]  *** Contents of shared directory: ***
[2025-11-22 08:47:34] total 1308976
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas 412087694 Nov 22 01:36 ATLAS.root_0
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:36 start_atlas.sh
[2025-11-22 08:47:34] -rw-r--r-- 2 boincer umatlas    590103 Nov 22 01:36 input.tar.gz
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas 921883424 Nov 22 08:46 HITS.pool.root.1
[2025-11-22 08:47:34] -rw------- 1 boincer umatlas   5795840 Nov 22 08:47 result.tar.gz
08:47:35 (1412): run_atlas exited; CPU time 289080.516570
08:47:35 (1412): called boinc_finish(0)

</stderr_txt>
]]>

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