Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:21 (3078): wrapper (7.7.26015): starting
02:30:21 (3078): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 02:30:21] Arguments: --nthreads 8
[2025-11-25 02:30:21] Threads: 8
[2025-11-25 02:30:21] Checking for CVMFS
[2025-11-25 02:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:30:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:30:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:30:24] 2.11.2.0 2066 86565 98804 153265 3 84 13465934 25165825 4632 130560 12 23416423 99.898 12714871 1761 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 02:30:24] CVMFS is ok
[2025-11-25 02:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:30:24] Checking for apptainer binary...
[2025-11-25 02:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:30:24] Running /usr/bin/apptainer --version
[2025-11-25 02:30:24] apptainer version 1.3.2-1.el7
[2025-11-25 02:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:30:34] cg-vwn446.simple-grid.lan
[2025-11-25 02:30:34] apptainer works
[2025-11-25 02:30:34] Set ATHENA_PROC_NUMBER=8
[2025-11-25 02:30:34] Set ATHENA_CORE_NUMBER=8
[2025-11-25 02:30:34] Starting ATLAS job with PandaID=6894289651
[2025-11-25 02:30:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:04:07]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:04:07] 2025-11-26 03:03:10,791 | INFO     | monitor loop #6159: job 0:6894289651 is in state 'finished'
[2025-11-26 04:04:07] 2025-11-26 03:03:10,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:04:07] 2025-11-26 03:03:12,080 | INFO     | time since job start (91735s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:13,299 | INFO     | monitor loop #6160: job 0:6894289651 is in state 'finished'
[2025-11-26 04:04:07] 2025-11-26 03:03:13,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:04:07] 2025-11-26 03:03:14,091 | INFO     | time since job start (91737s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:15,804 | INFO     | monitor loop #6161: job 0:6894289651 is in state 'finished'
[2025-11-26 04:04:07] 2025-11-26 03:03:15,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:04:07] 2025-11-26 03:03:16,101 | INFO     | time since job start (91739s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:18,114 | INFO     | time since job start (91741s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:18,314 | INFO     | monitor loop #6162: job 0:6894289651 is in state 'finished'
[2025-11-26 04:04:07] 2025-11-26 03:03:18,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:04:07] 2025-11-26 03:03:20,127 | INFO     | time since job start (91743s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:20,818 | INFO     | monitor loop #6163: job 0:6894289651 is in state 'finished'
[2025-11-26 04:04:07] 2025-11-26 03:03:20,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,477 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 04:04:07] 2025-11-26 03:03:21,478 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 04:04:07] 2025-11-26 03:03:21,480 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6894289651/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,481 | INFO     | extracted standard info from prmon json
[2025-11-26 04:04:07] 2025-11-26 03:03:21,481 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:04:07] 2025-11-26 03:03:21,481 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:04:07] 2025-11-26 03:03:21,523 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:04:07] 2025-11-26 03:03:21,526 | INFO     | sum of square deviations: 1034022873344.5654
[2025-11-26 04:04:07] 2025-11-26 03:03:21,650 | INFO     | sum of deviations: 2889034857729.2065
[2025-11-26 04:04:07] 2025-11-26 03:03:21,650 | INFO     | mean x: 1764080531.8199465
[2025-11-26 04:04:07] 2025-11-26 03:03:21,650 | INFO     | mean y: 2868509.1606425704
[2025-11-26 04:04:07] 2025-11-26 03:03:21,650 | INFO     | intersect: -4925929759.860829
[2025-11-26 04:04:07] 2025-11-26 03:03:21,652 | INFO     | chi2: 15.241489002924085
[2025-11-26 04:04:07] 2025-11-26 03:03:21,654 | INFO     | sum of square deviations: 1023676424978.3248
[2025-11-26 04:04:07] 2025-11-26 03:03:21,751 | INFO     | sum of deviations: 3388043818833.025
[2025-11-26 04:04:07] 2025-11-26 03:03:21,752 | INFO     | mean x: 1764080379.3243787
[2025-11-26 04:04:07] 2025-11-26 03:03:21,752 | INFO     | mean y: 2875862.9026192077
[2025-11-26 04:04:07] 2025-11-26 03:03:21,752 | INFO     | intersect: -5835669872.114313
[2025-11-26 04:04:07] 2025-11-26 03:03:21,754 | INFO     | chi2: 12.034654468245522
[2025-11-26 04:04:07] 2025-11-26 03:03:21,754 | INFO     | current chi2=12.034654468245522 (change=21.0401656561464 %)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,754 | INFO     | right removable region: 1488
[2025-11-26 04:04:07] 2025-11-26 03:03:21,756 | INFO     | sum of square deviations: 1023675222058.3264
[2025-11-26 04:04:07] 2025-11-26 03:03:21,833 | INFO     | sum of deviations: 2355595042752.789
[2025-11-26 04:04:07] 2025-11-26 03:03:21,833 | INFO     | mean x: 1764080684.3243787
[2025-11-26 04:04:07] 2025-11-26 03:03:21,833 | INFO     | mean y: 2876368.0335795837
[2025-11-26 04:04:07] 2025-11-26 03:03:21,834 | INFO     | intersect: -4056477248.6877275
[2025-11-26 04:04:07] 2025-11-26 03:03:21,835 | INFO     | chi2: 11.890664752811471
[2025-11-26 04:04:07] 2025-11-26 03:03:21,835 | INFO     | current chi2=11.890664752811471 (change=21.984887759127457 %)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,836 | INFO     | left removable region: 10
[2025-11-26 04:04:07] 2025-11-26 03:03:21,838 | INFO     | sum of square deviations: 1001155832738.374
[2025-11-26 04:04:07] 2025-11-26 03:03:21,898 | INFO     | sum of deviations: 2808989257253.583
[2025-11-26 04:04:07] 2025-11-26 03:03:21,898 | INFO     | mean x: 1764080653.8301759
[2025-11-26 04:04:07] 2025-11-26 03:03:21,898 | INFO     | mean y: 2887662.838971583
[2025-11-26 04:04:07] 2025-11-26 03:03:21,898 | INFO     | intersect: -4946675076.044632
[2025-11-26 04:04:07] 2025-11-26 03:03:21,900 | INFO     | chi2: 7.6571404011118505
[2025-11-26 04:04:07] 2025-11-26 03:03:21,900 | INFO     | current memory leak: 2.81 B/s (using 1478 data points, chi2=7.66)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,902 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 04:04:07] 2025-11-26 03:03:21,902 | INFO     | ..............................
[2025-11-26 04:04:07] 2025-11-26 03:03:21,902 | INFO     | . Timing measurements:
[2025-11-26 04:04:07] 2025-11-26 03:03:21,902 | INFO     | . get job = 0 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . initial setup = 4 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . payload setup = 151 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . stage-in = 0 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . payload execution = 91274 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . stage-out = 5 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | . log creation = 2 s
[2025-11-26 04:04:07] 2025-11-26 03:03:21,903 | INFO     | ..............................
[2025-11-26 04:04:07] 2025-11-26 03:03:22,039 | INFO     | 
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | job summary report
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | --------------------------------------------------
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | PanDA job id: 6894289651
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | task id: 47533967
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | errors: (none)
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | pilot state: finished 
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | transexitcode: 0
[2025-11-26 04:04:07] 2025-11-26 03:03:22,040 | INFO     | exeerrorcode: 0
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | exeerrordiag: 
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | exitcode: 0
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | exitmsg: OK
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | cpuconsumptiontime: 342949 s
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | nevents: 1000
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | neventsw: 0
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | pid: 13391
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | pgrp: 13391
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | corecount: 8
[2025-11-26 04:04:07] 2025-11-26 03:03:22,041 | INFO     | event service: False
[2025-11-26 04:04:07] 2025-11-26 03:03:22,042 | INFO     | sizes: {0: 2283380, 1: 2284065, 2: 2284264, 13: 2284264, 24: 2284320, 35: 2284348, 46: 2284504, 56: 2284532, 67: 2284560, 78: 2284588, 89: 2284644, 99: 2284952, 10
[2025-11-26 04:04:07] 2025-11-26 03:03:22,042 | INFO     | --------------------------------------------------
[2025-11-26 04:04:07] 2025-11-26 03:03:22,042 | INFO     | 
[2025-11-26 04:04:07] 2025-11-26 03:03:22,042 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 04:04:07] 2025-11-26 03:03:22,135 | INFO     | time since job start (91745s) is within the limit (172800.0s)
[2025-11-26 04:04:07] 2025-11-26 03:03:22,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | job 6894289651 has completed (purged errors)
[2025-11-26 04:04:07] 2025-11-26 03:03:22,581 | INFO     | overall cleanup function is called
[2025-11-26 04:04:07] 2025-11-26 03:03:23,597 | INFO     | --- collectZombieJob: --- 10, [13391]
[2025-11-26 04:04:07] 2025-11-26 03:03:23,598 | INFO     | zombie collector waiting for pid 13391
[2025-11-26 04:04:07] 2025-11-26 03:03:23,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:04:07] 2025-11-26 03:03:23,598 | INFO     | collected zombie processes
[2025-11-26 04:04:07] 2025-11-26 03:03:23,598 | INFO     | will attempt to kill all subprocesses of pid=13391
[2025-11-26 04:04:07] 2025-11-26 03:03:23,709 | INFO     | process IDs to be killed: [13391] (in reverse order)
[2025-11-26 04:04:07] 2025-11-26 03:03:24,219 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:04:07] 2025-11-26 03:03:24,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:04:07] 2025-11-26 03:03:24,231 | INFO     | did not find any defunct processes belonging to 13391
[2025-11-26 04:04:07] 2025-11-26 03:03:24,234 | INFO     | did not find any defunct processes belonging to 13391
[2025-11-26 04:04:07] 2025-11-26 03:03:24,294 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:04:07] 2025-11-26 03:03:24,294 | INFO     | ready for new job
[2025-11-26 04:04:07] 2025-11-26 03:03:24,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:04:07] 2025-11-26 03:03:24,300 | INFO     | ***************************************
[2025-11-26 04:04:07] 2025-11-26 03:03:24,300 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:04:07] 2025-11-26 03:03:24,301 | INFO     | ***************************************
[2025-11-26 04:04:07] 2025-11-26 03:03:24,301 | INFO     | 
[2025-11-26 04:04:07] 2025-11-26 03:03:24,301 | INFO     | pilot is running in a VM
[2025-11-26 04:04:07] 2025-11-26 03:03:24,301 | INFO     | architecture information:
[2025-11-26 04:04:07] 2025-11-26 03:03:24,309 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:04:07] 2025-11-26 03:03:24,565 | INFO     | cat /etc/os-release:
[2025-11-26 04:04:07] NAME="CentOS Linux"
[2025-11-26 04:04:07] VERSION="7 (Core)"
[2025-11-26 04:04:07] ID="centos"
[2025-11-26 04:04:07] ID_LIKE="rhel fedora"
[2025-11-26 04:04:07] VERSION_ID="7"
[2025-11-26 04:04:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:04:07] ANSI_COLOR="0;31"
[2025-11-26 04:04:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:04:07] HOME_URL="https://www.centos.org/"
[2025-11-26 04:04:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:04:07] 
[2025-11-26 04:04:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:04:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:04:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:04:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:04:07] 
[2025-11-26 04:04:07] 2025-11-26 03:03:24,565 | INFO     | ***************************************
[2025-11-26 04:04:07] 2025-11-26 03:03:25,069 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 04:04:07] 2025-11-26 03:03:25,284 | INFO     | sufficient remaining disk space (495442722816 B)
[2025-11-26 04:04:07] 2025-11-26 03:03:25,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:04:07] 2025-11-26 03:03:25,285 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:04:07] 2025-11-26 03:03:25,285 | INFO     | update_server=False
[2025-11-26 04:04:07] 2025-11-26 03:03:25,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:04:07] 2025-11-26 03:03:25,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:04:07] 2025-11-26 03:03:25,285 | INFO     | aborting loop
[2025-11-26 04:04:07] 2025-11-26 03:03:25,400 | INFO     | all data control threads have been joined
[2025-11-26 04:04:07] 2025-11-26 03:03:25,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:04:07] 2025-11-26 03:03:25,872 | INFO     | all payload control threads have been joined
[2025-11-26 04:04:07] 2025-11-26 03:03:25,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:04:07] 2025-11-26 03:03:26,039 | INFO     | all job control threads have been joined
[2025-11-26 04:04:07] 2025-11-26 03:03:26,291 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,291 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,407 | INFO     | [data] control thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,663 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,663 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,733 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:26,879 | INFO     | [payload] control thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,007 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,046 | INFO     | [job] control thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:04:07] 2025-11-26 03:03:27,224 | INFO     | [job] validate thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,673 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,685 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:27,706 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:28,059 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:29,899 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:04:07] 2025-11-26 03:03:55,325 | INFO     | PID=6864 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 04:04:07] 2025-11-26 03:03:55,326 | INFO     | .. there are 9 such processes running
[2025-11-26 04:04:07] 2025-11-26 03:03:55,326 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:04:07] 2025-11-26 03:03:55,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:04:07] 2025-11-26 03:03:55,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:04:07] 2025-11-26 03:03:58,228 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:04:07] 2025-11-26 03:03:59,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599398500160)>', '<ExcThread(monitor, started 140598816261888)>']
[2025-11-26 04:04:07] 2025-11-26 03:04:00,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:04:07] 2025-11-26 03:04:00,356 | INFO     | [monitor] control thread has ended
[2025-11-26 04:04:07] 2025-11-26 03:04:04,531 | INFO     | all workflow threads have been joined
[2025-11-26 04:04:07] 2025-11-26 03:04:04,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:04:07] 2025-11-26 03:04:04,532 | INFO     | traces error code: 0
[2025-11-26 04:04:07] 2025-11-26 03:04:04,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:04:07] 2025-11-26 03:04:04,929 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:04:07] 2025-11-26 03:04:05,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:04:07] 2025-11-26 03:04:05,059 [wrapper] pilotpid: 6864
[2025-11-26 04:04:07] 2025-11-26 03:04:05,110 [wrapper] Pilot exit status: 0
[2025-11-26 04:04:07] 2025-11-26 03:04:05,422 [wrapper] pandaids: 6894289651
[2025-11-26 04:04:07] 2025-11-26 03:04:06,515 [wrapper] cleanup supervisor_pilot 10511 6865
[2025-11-26 04:04:07] 2025-11-26 03:04:06,546 [wrapper] Test setup, not cleaning
[2025-11-26 04:04:07] 2025-11-26 03:04:06,618 [wrapper] apfmon messages muted
[2025-11-26 04:04:07] 2025-11-26 03:04:06,677 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:04:07] 2025-11-26 03:04:06,788 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:04:07]  *** Error codes and diagnostics ***
[2025-11-26 04:04:07]     "exeErrorCode": 0,
[2025-11-26 04:04:07]     "exeErrorDiag": "",
[2025-11-26 04:04:07]     "pilotErrorCode": 0,
[2025-11-26 04:04:07]     "pilotErrorDiag": "",
[2025-11-26 04:04:07]  *** Listing of results directory ***
[2025-11-26 04:04:07] total 1342840
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:23 pilot3.tar.gz
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:24 queuedata.json
[2025-11-26 04:04:07] -rwx------. 1 boinc boinc     36292 Nov 21 12:25 runpilot2-wrapper.sh
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc       100 Nov 25 02:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:04:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 02:30 run_atlas
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc       105 Nov 25 02:30 job.xml
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc      6393 Nov 25 02:30 init_data.xml
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc 412301883 Nov 25 02:30 EVNT.47493127._002407.pool.root.1
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:30 start_atlas.sh
[2025-11-26 04:04:07] drwxrwx--x. 2 boinc boinc        68 Nov 25 02:30 shared
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc    590109 Nov 25 02:30 input.tar.gz
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc         0 Nov 25 02:30 boinc_lockfile
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc      2784 Nov 25 02:30 pandaJob.out
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc    991801 Nov 25 02:34 agis_schedconf.cvmfs.json
[2025-11-26 04:04:07] drwx------. 5 boinc boinc      4096 Nov 25 02:34 pilot3
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc       533 Nov 26 03:40 boinc_task_state.xml
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc 929428722 Nov 26 04:00 HITS.47533967._003788.pool.root.1
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc      1031 Nov 26 04:01 memory_monitor_summary.json
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc   1516240 Nov 26 04:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc   2549449 Nov 26 04:01 log.47533967._003788.job.log.tgz.1
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc        95 Nov 26 04:03 pilot_heartbeat.json
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc      8626 Nov 26 04:03 heartbeat.json
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc      8192 Nov 26 04:03 boinc_mmap_file
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc        29 Nov 26 04:03 wrapper_checkpoint.txt
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc      4883 Nov 26 04:04 pilotlog.txt
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc  12165464 Nov 26 04:04 log.47533967._003788.job.log.1
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc       353 Nov 26 04:04 output.list
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc       620 Nov 26 04:04 runtime_log
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc  14735360 Nov 26 04:04 result.tar.gz
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc      8817 Nov 26 04:04 runtime_log.err
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc       662 Nov 26 04:04 pXsLDmhReg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOZHKDmK0Pwen.diag
[2025-11-26 04:04:07] -rw-r--r--. 1 boinc boinc     21439 Nov 26 04:04 stderr.txt
[2025-11-26 04:04:07] HITS file was successfully produced:
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc 929428722 Nov 26 04:00 shared/HITS.pool.root.1
[2025-11-26 04:04:07]  *** Contents of shared directory: ***
[2025-11-26 04:04:07] total 1325276
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc 412301883 Nov 25 02:30 ATLAS.root_0
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc     15847 Nov 25 02:30 start_atlas.sh
[2025-11-26 04:04:07] -rw-r--r--. 2 boinc boinc    590109 Nov 25 02:30 input.tar.gz
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc 929428722 Nov 26 04:00 HITS.pool.root.1
[2025-11-26 04:04:07] -rw-------. 1 boinc boinc  14735360 Nov 26 04:04 result.tar.gz
04:04:09 (3078): run_atlas exited; CPU time 343513.049755
04:04:09 (3078): called boinc_finish(0)

</stderr_txt>
]]>

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