Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:28:40 (2001439): wrapper (7.7.26015): starting
09:28:40 (2001439): wrapper: running run_atlas (--nthreads 9)
[2025-11-22 09:28:40] Arguments: --nthreads 9
[2025-11-22 09:28:40] Threads: 9
[2025-11-22 09:28:40] Checking for CVMFS
[2025-11-22 09:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:28:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:28:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:28:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:28:43] 2.13.2.0 5664 28134 207808 153174 1 159 28772938 39288832 5977 16776704 0 19967573 99.606 17608182 32161 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 09:28:43] CVMFS is ok
[2025-11-22 09:28:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:28:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:28:43] Further information can be found at the LHC@home message board.
[2025-11-22 09:28:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:28:43] Checking for apptainer binary...
[2025-11-22 09:28:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 09:28:43] Running /usr/bin/apptainer --version
[2025-11-22 09:28:43] apptainer version 1.4.4-1.el9
[2025-11-22 09:28:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:28:43] c-210-30.aglt2.org
[2025-11-22 09:28:43] apptainer works
[2025-11-22 09:28:43] Set ATHENA_PROC_NUMBER=9
[2025-11-22 09:28:43] Set ATHENA_CORE_NUMBER=9
[2025-11-22 09:28:43] Starting ATLAS job with PandaID=6894264785
[2025-11-22 09:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:28:40]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:28:40] 2025-11-23 21:27:35,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:28:40] 2025-11-23 21:27:35,778 | INFO     | time since job start (111456s) is within the limit (172800.0s)
[2025-11-23 16:28:40] 2025-11-23 21:27:38,093 | INFO     | monitor loop #6796: job 0:6894264785 is in state 'finished'
[2025-11-23 16:28:40] 2025-11-23 21:27:38,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:28:40] 2025-11-23 21:27:40,681 | INFO     | monitor loop #6797: job 0:6894264785 is in state 'finished'
[2025-11-23 16:28:40] 2025-11-23 21:27:40,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:28:40] 2025-11-23 21:27:41,052 | INFO     | PID=2024604 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 16:28:40] 2025-11-23 21:27:41,052 | INFO     | .. there are 8 such processes running
[2025-11-23 16:28:40] 2025-11-23 21:27:42,052 | INFO     | time since job start (111463s) is within the limit (172800.0s)
[2025-11-23 16:28:40] 2025-11-23 21:27:43,189 | INFO     | monitor loop #6798: job 0:6894264785 is in state 'finished'
[2025-11-23 16:28:40] 2025-11-23 21:27:43,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:28:40] 2025-11-23 21:27:44,059 | INFO     | time since job start (111465s) is within the limit (172800.0s)
[2025-11-23 16:28:40] 2025-11-23 21:27:44,771 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 16:28:40] 2025-11-23 21:27:44,845 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8534750000013
[2025-11-23 16:28:40] 2025-11-23 21:27:44,874 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894264785/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 16:28:40] 2025-11-23 21:27:44,875 | INFO     | extracted standard info from prmon json
[2025-11-23 16:28:40] 2025-11-23 21:27:44,875 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 16:28:40] 2025-11-23 21:27:44,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 16:28:40] 2025-11-23 21:27:44,908 | INFO     | fitting pss+swap vs Time
[2025-11-23 16:28:40] 2025-11-23 21:27:44,911 | INFO     | sum of square deviations: 1881991343583.998
[2025-11-23 16:28:40] 2025-11-23 21:27:45,008 | INFO     | sum of deviations: 5127808441449.025
[2025-11-23 16:28:40] 2025-11-23 21:27:45,009 | INFO     | mean x: 1763877558.0619516
[2025-11-23 16:28:40] 2025-11-23 21:27:45,009 | INFO     | mean y: 3155208.9111842103
[2025-11-23 16:28:40] 2025-11-23 21:27:45,009 | INFO     | intersect: -4802831950.778892
[2025-11-23 16:28:40] 2025-11-23 21:27:45,014 | INFO     | chi2: 17.466314184720304
[2025-11-23 16:28:40] 2025-11-23 21:27:45,017 | INFO     | sum of square deviations: 1866561555320.803
[2025-11-23 16:28:40] 2025-11-23 21:27:45,212 | INFO     | sum of deviations: 5790781555747.583
[2025-11-23 16:28:40] 2025-11-23 21:27:45,212 | INFO     | mean x: 1763877405.5739417
[2025-11-23 16:28:40] 2025-11-23 21:27:45,212 | INFO     | mean y: 3161760.0588235296
[2025-11-23 16:28:40] 2025-11-23 21:27:45,212 | INFO     | intersect: -5469054635.74173
[2025-11-23 16:28:40] 2025-11-23 21:27:45,219 | INFO     | chi2: 14.381355547582837
[2025-11-23 16:28:40] 2025-11-23 21:27:45,219 | INFO     | current chi2=14.381355547582837 (change=17.66233336072826 %)
[2025-11-23 16:28:40] 2025-11-23 21:27:45,219 | INFO     | right removable region: 1818
[2025-11-23 16:28:40] 2025-11-23 21:27:45,226 | INFO     | sum of square deviations: 1866556590644.657
[2025-11-23 16:28:40] 2025-11-23 21:27:45,511 | INFO     | sum of deviations: 4313740915216.4014
[2025-11-23 16:28:40] 2025-11-23 21:27:45,512 | INFO     | mean x: 1763877710.5744915
[2025-11-23 16:28:40] 2025-11-23 21:27:45,512 | INFO     | mean y: 3163251.978559648
[2025-11-23 16:28:40] 2025-11-23 21:27:45,512 | INFO     | intersect: -4073279695.2537613
[2025-11-23 16:28:40] 2025-11-23 21:27:45,514 | INFO     | chi2: 13.188028700790447
[2025-11-23 16:28:40] 2025-11-23 21:27:45,514 | INFO     | current chi2=13.188028700790447 (change=24.49449516757543 %)
[2025-11-23 16:28:40] 2025-11-23 21:27:45,514 | INFO     | left removable region: 10
[2025-11-23 16:28:40] 2025-11-23 21:27:45,525 | INFO     | sum of square deviations: 1832903711428.4766
[2025-11-23 16:28:40] 2025-11-23 21:27:45,715 | INFO     | monitor loop #6799: job 0:6894264785 is in state 'finished'
[2025-11-23 16:28:40] 2025-11-23 21:27:45,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:28:40] 2025-11-23 21:27:45,748 | INFO     | sum of deviations: 4538511420698.509
[2025-11-23 16:28:40] 2025-11-23 21:27:45,749 | INFO     | mean x: 1763877680.1012168
[2025-11-23 16:28:40] 2025-11-23 21:27:45,749 | INFO     | mean y: 3176724.357853982
[2025-11-23 16:28:40] 2025-11-23 21:27:45,749 | INFO     | intersect: -4364417135.5594015
[2025-11-23 16:28:40] 2025-11-23 21:27:45,752 | INFO     | chi2: 7.375606010130417
[2025-11-23 16:28:40] 2025-11-23 21:27:45,752 | INFO     | current memory leak: 2.48 B/s (using 1808 data points, chi2=7.38)
[2025-11-23 16:28:40] 2025-11-23 21:27:45,758 | INFO     | could have reported an average CPU frequency of 2598 MHz (64 samples)
[2025-11-23 16:28:40] 2025-11-23 21:27:45,758 | INFO     | ..............................
[2025-11-23 16:28:40] 2025-11-23 21:27:45,762 | INFO     | . Timing measurements:
[2025-11-23 16:28:40] 2025-11-23 21:27:45,763 | INFO     | . get job = 0 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,763 | INFO     | . initial setup = 4 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,763 | INFO     | . payload setup = 56 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,763 | INFO     | . stage-in = 0 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,768 | INFO     | . payload execution = 111274 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,769 | INFO     | . stage-out = 14 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,769 | INFO     | . log creation = 7 s
[2025-11-23 16:28:40] 2025-11-23 21:27:45,769 | INFO     | ..............................
[2025-11-23 16:28:40] 2025-11-23 21:27:46,008 | INFO     | 
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | job summary report
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | --------------------------------------------------
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | PanDA job id: 6894264785
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | task id: 47533967
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | errors: (none)
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | pilot state: finished 
[2025-11-23 16:28:40] 2025-11-23 21:27:46,009 | INFO     | transexitcode: 0
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | exeerrorcode: 0
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | exeerrordiag: 
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | exitcode: 0
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | exitmsg: OK
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | cpuconsumptiontime: 316246 s
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | nevents: 1000
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | neventsw: 0
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | pid: 2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:46,010 | INFO     | pgrp: 2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | corecount: 9
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | event service: False
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298835, 12: 2298863, 23: 2298891, 28: 2299181, 34: 2299337, 111335: 2375635, 111350: 2384629, 111352: 2384685, 111401: 2384931}
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | --------------------------------------------------
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | 
[2025-11-23 16:28:40] 2025-11-23 21:27:46,011 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-23 16:28:40] 2025-11-23 21:27:46,111 | INFO     | time since job start (111467s) is within the limit (172800.0s)
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 16:28:40] 2025-11-23 21:27:46,187 | INFO     | job 6894264785 has completed (purged errors)
[2025-11-23 16:28:40] 2025-11-23 21:27:46,188 | INFO     | overall cleanup function is called
[2025-11-23 16:28:40] 2025-11-23 21:27:47,222 | INFO     | --- collectZombieJob: --- 10, [2034048]
[2025-11-23 16:28:40] 2025-11-23 21:27:47,223 | INFO     | zombie collector waiting for pid 2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:47,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 16:28:40] 2025-11-23 21:27:47,223 | INFO     | collected zombie processes
[2025-11-23 16:28:40] 2025-11-23 21:27:47,223 | INFO     | will attempt to kill all subprocesses of pid=2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:49,360 | INFO     | process IDs to be killed: [2034048] (in reverse order)
[2025-11-23 16:28:40] 2025-11-23 21:27:49,621 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 16:28:40] 2025-11-23 21:27:49,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 16:28:40] 2025-11-23 21:27:49,641 | INFO     | did not find any defunct processes belonging to 2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:49,659 | INFO     | did not find any defunct processes belonging to 2034048
[2025-11-23 16:28:40] 2025-11-23 21:27:49,665 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 16:28:40] 2025-11-23 21:27:49,665 | INFO     | ready for new job
[2025-11-23 16:28:40] 2025-11-23 21:27:49,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 16:28:40] 2025-11-23 21:27:49,682 | INFO     | ***************************************
[2025-11-23 16:28:40] 2025-11-23 21:27:49,682 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 16:28:40] 2025-11-23 21:27:49,682 | INFO     | ***************************************
[2025-11-23 16:28:40] 2025-11-23 21:27:49,682 | INFO     | 
[2025-11-23 16:28:40] 2025-11-23 21:27:49,688 | INFO     | architecture information:
[2025-11-23 16:28:40] 2025-11-23 21:27:49,689 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:28:40] 2025-11-23 21:27:49,758 | INFO     | cat /etc/os-release:
[2025-11-23 16:28:40] NAME="CentOS Linux"
[2025-11-23 16:28:40] VERSION="7 (Core)"
[2025-11-23 16:28:40] ID="centos"
[2025-11-23 16:28:40] ID_LIKE="rhel fedora"
[2025-11-23 16:28:40] VERSION_ID="7"
[2025-11-23 16:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:28:40] ANSI_COLOR="0;31"
[2025-11-23 16:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:28:40] HOME_URL="https://www.centos.org/"
[2025-11-23 16:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:28:40] 
[2025-11-23 16:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:28:40] 
[2025-11-23 16:28:40] 2025-11-23 21:27:49,758 | INFO     | ***************************************
[2025-11-23 16:28:40] 2025-11-23 21:27:50,261 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-23 16:28:40] 2025-11-23 21:27:50,312 | INFO     | sufficient remaining disk space (49664753664 B)
[2025-11-23 16:28:40] 2025-11-23 21:27:50,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:28:40] 2025-11-23 21:27:50,313 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:28:40] 2025-11-23 21:27:50,313 | INFO     | update_server=False
[2025-11-23 16:28:40] 2025-11-23 21:27:50,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:28:40] 2025-11-23 21:27:50,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:28:40] 2025-11-23 21:27:50,468 | INFO     | all payload control threads have been joined
[2025-11-23 16:28:40] 2025-11-23 21:27:50,672 | INFO     | all data control threads have been joined
[2025-11-23 16:28:40] 2025-11-23 21:27:50,764 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 16:28:40] 2025-11-23 21:27:50,764 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 16:28:40] 2025-11-23 21:27:50,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:28:40] 2025-11-23 21:27:50,764 | INFO     | will abort loop
[2025-11-23 16:28:40] 2025-11-23 21:27:51,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:28:40] 2025-11-23 21:27:51,186 | INFO     | all job control threads have been joined
[2025-11-23 16:28:40] 2025-11-23 21:27:51,318 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,381 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,474 | INFO     | [payload] control thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:28:40] 2025-11-23 21:27:51,647 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,678 | INFO     | [data] control thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,769 | INFO     | [job] validate thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,770 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:51,794 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:52,064 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:52,080 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:52,148 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:52,192 | INFO     | [job] control thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:52,927 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:53,652 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:27:54,322 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:28:40] 2025-11-23 21:28:20,122 | INFO     | PID=2024604 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 16:28:40] 2025-11-23 21:28:20,123 | INFO     | .. there are 8 such processes running
[2025-11-23 16:28:40] 2025-11-23 21:28:20,127 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:28:40] 2025-11-23 21:28:20,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:28:40] 2025-11-23 21:28:20,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:28:40] 2025-11-23 21:28:25,275 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:28:40] 2025-11-23 21:28:26,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985088137024)>', '<ExcThread(monitor, started 139984459790080)>']
[2025-11-23 16:28:40] 2025-11-23 21:28:27,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:28:40] 2025-11-23 21:28:27,169 | INFO     | [monitor] control thread has ended
[2025-11-23 16:28:40] 2025-11-23 21:28:31,719 | INFO     | all workflow threads have been joined
[2025-11-23 16:28:40] 2025-11-23 21:28:31,719 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:28:40] 2025-11-23 21:28:31,719 | INFO     | traces error code: 0
[2025-11-23 16:28:40] 2025-11-23 21:28:31,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:28:40] 2025-11-23 21:28:38,158 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:28:40] 2025-11-23 21:28:38,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:28:40] 2025-11-23 21:28:38,262 [wrapper] pilotpid: 2024604
[2025-11-23 16:28:40] 2025-11-23 21:28:38,324 [wrapper] Pilot exit status: 0
[2025-11-23 16:28:40] 2025-11-23 21:28:38,543 [wrapper] pandaids: 6894264785
[2025-11-23 16:28:40] 2025-11-23 21:28:39,309 [wrapper] cleanup supervisor_pilot  272484 2024605
[2025-11-23 16:28:40] 2025-11-23 21:28:39,359 [wrapper] Test setup, not cleaning
[2025-11-23 16:28:40] 2025-11-23 21:28:39,427 [wrapper] apfmon messages muted
[2025-11-23 16:28:40] 2025-11-23 21:28:39,488 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:28:40] 2025-11-23 21:28:39,542 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:28:40]  *** Error codes and diagnostics ***
[2025-11-23 16:28:40]     "exeErrorCode": 0,
[2025-11-23 16:28:40]     "exeErrorDiag": "",
[2025-11-23 16:28:40]     "pilotErrorCode": 0,
[2025-11-23 16:28:40]     "pilotErrorDiag": "",
[2025-11-23 16:28:40]  *** Listing of results directory ***
[2025-11-23 16:28:40] total 1336224
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 23:12 pilot3.tar.gz
[2025-11-23 16:28:40] -rwx------. 1 boincer umatlas     36292 Nov 20 23:52 runpilot2-wrapper.sh
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 23:52 queuedata.json
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas       100 Nov 22 09:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:28:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 09:28 run_atlas
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas       105 Nov 22 09:28 job.xml
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas 409048031 Nov 22 09:28 EVNT.47493127._002202.pool.root.1
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 09:28 start_atlas.sh
[2025-11-23 16:28:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 09:28 shared
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas    590106 Nov 22 09:28 input.tar.gz
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas         0 Nov 22 09:28 boinc_lockfile
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 09:28 pandaJob.out
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas        57 Nov 22 09:28 setup.sh.local
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas    989768 Nov 22 09:29 agis_schedconf.cvmfs.json
[2025-11-23 16:28:40] drwx------. 5 boincer umatlas      4096 Nov 22 09:29 pilot3
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas       534 Nov 23 16:07 boinc_task_state.xml
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas 921338283 Nov 23 16:25 HITS.47533967._001735.pool.root.1
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas      1062 Nov 23 16:26 memory_monitor_summary.json
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas   1526164 Nov 23 16:26 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas   2853556 Nov 23 16:26 log.47533967._001735.job.log.tgz.1
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas      6663 Nov 23 16:27 init_data.xml
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas      8633 Nov 23 16:27 heartbeat.json
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas        95 Nov 23 16:28 pilot_heartbeat.json
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas      5009 Nov 23 16:28 pilotlog.txt
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 16:28 boinc_mmap_file
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas        29 Nov 23 16:28 wrapper_checkpoint.txt
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas  14137074 Nov 23 16:28 log.47533967._001735.job.log.1
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas       353 Nov 23 16:28 output.list
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas       620 Nov 23 16:28 runtime_log
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas  17008640 Nov 23 16:28 result.tar.gz
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas      9344 Nov 23 16:28 runtime_log.err
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas       664 Nov 23 16:28 PkdLDmdJYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm42IKDmZ8vg8m.diag
[2025-11-23 16:28:40] -rw-r--r--. 1 boincer umatlas     21888 Nov 23 16:28 stderr.txt
[2025-11-23 16:28:40] HITS file was successfully produced:
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas 921338283 Nov 23 16:25 shared/HITS.pool.root.1
[2025-11-23 16:28:40]  *** Contents of shared directory: ***
[2025-11-23 16:28:40] total 1316424
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas 409048031 Nov 22 09:28 ATLAS.root_0
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 09:28 start_atlas.sh
[2025-11-23 16:28:40] -rw-r--r--. 2 boincer umatlas    590106 Nov 22 09:28 input.tar.gz
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas 921338283 Nov 23 16:25 HITS.pool.root.1
[2025-11-23 16:28:40] -rw-------. 1 boincer umatlas  17008640 Nov 23 16:28 result.tar.gz
16:28:41 (2001439): run_atlas exited; CPU time 317566.748201
16:28:41 (2001439): called boinc_finish(0)

</stderr_txt>
]]>

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