Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:35:04 (2200390): wrapper (7.7.26015): starting
10:35:04 (2200390): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 10:35:04] Arguments: --nthreads 8
[2025-11-22 10:35:04] Threads: 8
[2025-11-22 10:35:04] Checking for CVMFS
[2025-11-22 10:35:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 10:35:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 10:35:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 10:35:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 10:35:06] 2.13.3.0 15733 23038 352304 153176 3 491 24274988 32935936 22230 16776704 0 125303628 99.730 84957150 25857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 10:35:06] CVMFS is ok
[2025-11-22 10:35:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 10:35:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 10:35:06] Further information can be found at the LHC@home message board.
[2025-11-22 10:35:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 10:35:06] Checking for apptainer binary...
[2025-11-22 10:35:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 10:35:06] Running /usr/bin/apptainer --version
[2025-11-22 10:35:06] apptainer version 1.4.4-1.el9
[2025-11-22 10:35:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 10:35:07] c-8-39.aglt2.org
[2025-11-22 10:35:07] apptainer works
[2025-11-22 10:35:07] Set ATHENA_PROC_NUMBER=8
[2025-11-22 10:35:07] Set ATHENA_CORE_NUMBER=8
[2025-11-22 10:35:07] Starting ATLAS job with PandaID=6893935727
[2025-11-22 10:35:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:28:56]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:28:57] 2025-11-23 17:28:18,024 | INFO     | extracted standard info from prmon json
[2025-11-23 12:28:57] 2025-11-23 17:28:18,024 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:28:57] 2025-11-23 17:28:18,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:28:57] 2025-11-23 17:28:18,025 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 12:28:57] 2025-11-23 17:28:18,025 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 12:28:57] 2025-11-23 17:28:18,277 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:28:57] 2025-11-23 17:28:18,279 | INFO     | sum of square deviations: 1095417892744.3517
[2025-11-23 12:28:57] 2025-11-23 17:28:18,632 | INFO     | monitor loop #4306: job 0:6893935727 is in state 'finished'
[2025-11-23 12:28:57] 2025-11-23 17:28:18,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:28:57] 2025-11-23 17:28:18,983 | INFO     | sum of deviations: 505363338658.62976
[2025-11-23 12:28:57] 2025-11-23 17:28:18,983 | INFO     | mean x: 1763872379.6782665
[2025-11-23 12:28:57] 2025-11-23 17:28:18,983 | INFO     | mean y: 2596002.4359816154
[2025-11-23 12:28:57] 2025-11-23 17:28:18,983 | INFO     | intersect: -811154111.2569164
[2025-11-23 12:28:57] 2025-11-23 17:28:18,990 | INFO     | chi2: 7.177018149682238
[2025-11-23 12:28:57] 2025-11-23 17:28:18,992 | INFO     | sum of square deviations: 1084664787579.9023
[2025-11-23 12:28:57] 2025-11-23 17:28:19,125 | INFO     | sum of deviations: 1005144613021.7682
[2025-11-23 12:28:57] 2025-11-23 17:28:19,126 | INFO     | mean x: 1763872227.179842
[2025-11-23 12:28:57] 2025-11-23 17:28:19,126 | INFO     | mean y: 2603090.2865612647
[2025-11-23 12:28:57] 2025-11-23 17:28:19,126 | INFO     | intersect: -1631954136.526632
[2025-11-23 12:28:57] 2025-11-23 17:28:19,132 | INFO     | chi2: 3.722812729385873
[2025-11-23 12:28:57] 2025-11-23 17:28:19,133 | INFO     | current chi2=3.722812729385873 (change=48.128698412854085 %)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,135 | INFO     | sum of square deviations: 1073982196280.8118
[2025-11-23 12:28:57] 2025-11-23 17:28:19,278 | INFO     | sum of deviations: 1002333184070.0773
[2025-11-23 12:28:57] 2025-11-23 17:28:19,278 | INFO     | mean x: 1763872074.6807666
[2025-11-23 12:28:57] 2025-11-23 17:28:19,279 | INFO     | mean y: 2603050.2775941836
[2025-11-23 12:28:57] 2025-11-23 17:28:19,279 | INFO     | intersect: -1643595107.4102955
[2025-11-23 12:28:57] 2025-11-23 17:28:19,285 | INFO     | chi2: 3.7220751743225273
[2025-11-23 12:28:57] 2025-11-23 17:28:19,285 | INFO     | current chi2=3.7220751743225273 (change=0.01981176913691186 %)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,286 | INFO     | right removable region: 1512
[2025-11-23 12:28:57] 2025-11-23 17:28:19,292 | INFO     | sum of square deviations: 1084664250474.5424
[2025-11-23 12:28:57] 2025-11-23 17:28:19,375 | INFO     | sum of deviations: 47688616818.210815
[2025-11-23 12:28:57] 2025-11-23 17:28:19,376 | INFO     | mean x: 1763872532.1805007
[2025-11-23 12:28:57] 2025-11-23 17:28:19,376 | INFO     | mean y: 2602490.6963109355
[2025-11-23 12:28:57] 2025-11-23 17:28:19,376 | INFO     | intersect: -74948365.49400045
[2025-11-23 12:28:57] 2025-11-23 17:28:19,379 | INFO     | chi2: 4.189506877318568
[2025-11-23 12:28:57] 2025-11-23 17:28:19,379 | INFO     | current chi2=4.189506877318568 (change=41.626079383621764 %)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,382 | INFO     | sum of square deviations: 1073981491972.8115
[2025-11-23 12:28:57] 2025-11-23 17:28:19,429 | INFO     | time since job start (93114s) is within the limit (172800.0s)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,453 | INFO     | sum of deviations: -124784041298.31358
[2025-11-23 12:28:57] 2025-11-23 17:28:19,453 | INFO     | mean x: 1763872684.6807666
[2025-11-23 12:28:57] 2025-11-23 17:28:19,454 | INFO     | mean y: 2604950.545935228
[2025-11-23 12:28:57] 2025-11-23 17:28:19,454 | INFO     | intersect: 207546249.41865736
[2025-11-23 12:28:57] 2025-11-23 17:28:19,456 | INFO     | chi2: 3.6685244286123453
[2025-11-23 12:28:57] 2025-11-23 17:28:19,456 | INFO     | current chi2=3.6685244286123453 (change=12.435412184826621 %)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,457 | INFO     | left removable region: 20
[2025-11-23 12:28:57] 2025-11-23 17:28:19,459 | INFO     | sum of square deviations: 1029879896124.9452
[2025-11-23 12:28:57] 2025-11-23 17:28:19,530 | INFO     | sum of deviations: 328093585813.1965
[2025-11-23 12:28:57] 2025-11-23 17:28:19,531 | INFO     | mean x: 1763872654.1849866
[2025-11-23 12:28:57] 2025-11-23 17:28:19,531 | INFO     | mean y: 2612775.5355227883
[2025-11-23 12:28:57] 2025-11-23 17:28:19,531 | INFO     | intersect: -559312266.6047139
[2025-11-23 12:28:57] 2025-11-23 17:28:19,600 | INFO     | chi2: 0.15657775633687418
[2025-11-23 12:28:57] 2025-11-23 17:28:19,601 | INFO     | current memory leak: 0.32 B/s (using 1492 data points, chi2=0.16)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,602 | INFO     | could have reported an average CPU frequency of 2721 MHz (53 samples)
[2025-11-23 12:28:57] 2025-11-23 17:28:19,602 | INFO     | ..............................
[2025-11-23 12:28:57] 2025-11-23 17:28:19,603 | INFO     | . Timing measurements:
[2025-11-23 12:28:57] 2025-11-23 17:28:19,610 | INFO     | . get job = 0 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . initial setup = 7 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . payload setup = 49 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . stage-in = 0 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . payload execution = 92901 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . stage-out = 11 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | . log creation = 3 s
[2025-11-23 12:28:57] 2025-11-23 17:28:19,611 | INFO     | ..............................
[2025-11-23 12:28:57] 2025-11-23 17:28:20,080 | INFO     | 
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | job summary report
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | --------------------------------------------------
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | PanDA job id: 6893935727
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | task id: 47523642
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | errors: (none)
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | pilot state: finished 
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | transexitcode: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:20,081 | INFO     | exeerrorcode: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | exeerrordiag: 
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | exitcode: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | exitmsg: OK
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | cpuconsumptiontime: 147527 s
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | nevents: 400
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | neventsw: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | pid: 2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | pgrp: 2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | corecount: 8
[2025-11-23 12:28:57] 2025-11-23 17:28:20,082 | INFO     | event service: False
[2025-11-23 12:28:57] 2025-11-23 17:28:20,083 | INFO     | sizes: {0: 2297635, 1: 2298320, 2: 2298320, 3: 2298547, 14: 2298547, 26: 2298575, 37: 2259338, 38: 2299021, 49: 2299049, 92955: 2362984, 92956: 2362983, 92969: 237
[2025-11-23 12:28:57] 2025-11-23 17:28:20,083 | INFO     | --------------------------------------------------
[2025-11-23 12:28:57] 2025-11-23 17:28:20,083 | INFO     | 
[2025-11-23 12:28:57] 2025-11-23 17:28:20,083 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 12:28:57] 2025-11-23 17:28:20,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,289 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:28:57] 2025-11-23 17:28:20,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:28:57] 2025-11-23 17:28:20,290 | INFO     | job 6893935727 has completed (purged errors)
[2025-11-23 12:28:57] 2025-11-23 17:28:20,290 | INFO     | overall cleanup function is called
[2025-11-23 12:28:57] 2025-11-23 17:28:21,300 | INFO     | --- collectZombieJob: --- 10, [2215304]
[2025-11-23 12:28:57] 2025-11-23 17:28:21,301 | INFO     | zombie collector waiting for pid 2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:21,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:28:57] 2025-11-23 17:28:21,301 | INFO     | collected zombie processes
[2025-11-23 12:28:57] 2025-11-23 17:28:21,301 | INFO     | will attempt to kill all subprocesses of pid=2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:23,462 | INFO     | process IDs to be killed: [2215304] (in reverse order)
[2025-11-23 12:28:57] 2025-11-23 17:28:23,743 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:28:57] 2025-11-23 17:28:23,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:28:57] 2025-11-23 17:28:23,829 | INFO     | did not find any defunct processes belonging to 2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:23,868 | INFO     | did not find any defunct processes belonging to 2215304
[2025-11-23 12:28:57] 2025-11-23 17:28:23,904 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:28:57] 2025-11-23 17:28:23,904 | INFO     | ready for new job
[2025-11-23 12:28:57] 2025-11-23 17:28:23,904 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:28:57] 2025-11-23 17:28:23,936 | INFO     | ***************************************
[2025-11-23 12:28:57] 2025-11-23 17:28:23,936 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:28:57] 2025-11-23 17:28:23,965 | INFO     | ***************************************
[2025-11-23 12:28:57] 2025-11-23 17:28:23,965 | INFO     | 
[2025-11-23 12:28:57] 2025-11-23 17:28:23,968 | INFO     | architecture information:
[2025-11-23 12:28:57] 2025-11-23 17:28:23,972 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:28:57] 2025-11-23 17:28:24,168 | INFO     | cat /etc/os-release:
[2025-11-23 12:28:57] NAME="CentOS Linux"
[2025-11-23 12:28:57] VERSION="7 (Core)"
[2025-11-23 12:28:57] ID="centos"
[2025-11-23 12:28:57] ID_LIKE="rhel fedora"
[2025-11-23 12:28:57] VERSION_ID="7"
[2025-11-23 12:28:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:28:57] ANSI_COLOR="0;31"
[2025-11-23 12:28:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:28:57] HOME_URL="https://www.centos.org/"
[2025-11-23 12:28:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:28:57] 
[2025-11-23 12:28:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:28:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:28:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:28:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:28:57] 
[2025-11-23 12:28:57] 2025-11-23 17:28:24,169 | INFO     | ***************************************
[2025-11-23 12:28:57] 2025-11-23 17:28:24,681 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 12:28:57] 2025-11-23 17:28:24,860 | INFO     | sufficient remaining disk space (70344769536 B)
[2025-11-23 12:28:57] 2025-11-23 17:28:24,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:28:57] 2025-11-23 17:28:24,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:28:57] 2025-11-23 17:28:24,861 | INFO     | update_server=False
[2025-11-23 12:28:57] 2025-11-23 17:28:24,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:28:57] 2025-11-23 17:28:24,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:28:57] 2025-11-23 17:28:24,900 | INFO     | aborting loop
[2025-11-23 12:28:57] 2025-11-23 17:28:25,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:28:57] 2025-11-23 17:28:25,616 | INFO     | all payload control threads have been joined
[2025-11-23 12:28:57] 2025-11-23 17:28:25,648 | INFO     | all data control threads have been joined
[2025-11-23 12:28:57] 2025-11-23 17:28:25,848 | INFO     | all job control threads have been joined
[2025-11-23 12:28:57] 2025-11-23 17:28:25,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:28:57] 2025-11-23 17:28:25,905 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:25,905 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:25,936 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,190 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,633 | INFO     | [payload] control thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,654 | INFO     | [data] control thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,692 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,693 | INFO     | [job] validate thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,783 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,854 | INFO     | [job] control thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:26,879 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:27,448 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:27,457 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:27,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:28:57] 2025-11-23 17:28:27,902 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:31,891 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:28:57] 2025-11-23 17:28:39,548 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:28:57] 2025-11-23 17:28:41,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462369343296)>', '<ExcThread(monitor, started 140461729638144)>']
[2025-11-23 12:28:57] 2025-11-23 17:28:46,371 | INFO     | all workflow threads have been joined
[2025-11-23 12:28:57] 2025-11-23 17:28:46,373 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:28:57] 2025-11-23 17:28:46,373 | INFO     | traces error code: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:46,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:28:57] 2025-11-23 17:28:55,079 | INFO     | PID=2206204 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 12:28:57] 2025-11-23 17:28:55,079 | INFO     | .. there are 52 such processes running
[2025-11-23 12:28:57] 2025-11-23 17:28:55,080 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:28:57] 2025-11-23 17:28:55,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:28:57] 2025-11-23 17:28:55,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:28:57] 2025-11-23 17:28:55,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:28:57] 2025-11-23 17:28:55,081 | CRITICAL | thread 'MainThread' is not alive
[2025-11-23 12:28:57] 2025-11-23 17:28:55,081 | INFO     | [monitor] control thread has ended
[2025-11-23 12:28:57] 2025-11-23 17:28:55,430 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:28:57] 2025-11-23 17:28:55,441 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:28:57] 2025-11-23 17:28:55,461 [wrapper] pilotpid: 2206204
[2025-11-23 12:28:57] 2025-11-23 17:28:55,486 [wrapper] Pilot exit status: 0
[2025-11-23 12:28:57] 2025-11-23 17:28:55,576 [wrapper] pandaids: 6893935727
[2025-11-23 12:28:57] 2025-11-23 17:28:55,730 [wrapper] cleanup supervisor_pilot 3524565 2206205
[2025-11-23 12:28:57] 2025-11-23 17:28:55,765 [wrapper] Test setup, not cleaning
[2025-11-23 12:28:57] 2025-11-23 17:28:55,792 [wrapper] apfmon messages muted
[2025-11-23 12:28:57] 2025-11-23 17:28:55,813 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:28:57] 2025-11-23 17:28:55,852 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:28:57]  *** Error codes and diagnostics ***
[2025-11-23 12:28:57]     "exeErrorCode": 0,
[2025-11-23 12:28:57]     "exeErrorDiag": "",
[2025-11-23 12:28:57]     "pilotErrorCode": 0,
[2025-11-23 12:28:57]     "pilotErrorDiag": "",
[2025-11-23 12:28:57]  *** Listing of results directory ***
[2025-11-23 12:28:57] total 643560
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:54 pilot3.tar.gz
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:12 queuedata.json
[2025-11-23 12:28:57] -rwx------. 1 boincer umatlas     36292 Nov 21 14:13 runpilot2-wrapper.sh
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas       100 Nov 22 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:28:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 22 10:35 run_atlas
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas       105 Nov 22 10:35 job.xml
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas 292638168 Nov 22 10:35 EVNT.47523640._000005.pool.root.1
[2025-11-23 12:28:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 22 10:35 shared
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas    589958 Nov 22 10:35 input.tar.gz
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 10:35 start_atlas.sh
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas         0 Nov 22 10:35 boinc_lockfile
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas      2632 Nov 22 10:35 pandaJob.out
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas        57 Nov 22 10:35 setup.sh.local
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas    989768 Nov 22 10:36 agis_schedconf.cvmfs.json
[2025-11-23 12:28:57] drwx------. 5 boincer umatlas      4096 Nov 22 10:36 pilot3
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas 340208359 Nov 23 12:21 HITS.47523642._000111.pool.root.1
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas       532 Nov 23 12:21 boinc_task_state.xml
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas      6612 Nov 23 12:21 init_data.xml
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas      1045 Nov 23 12:27 memory_monitor_summary.json
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas   1526164 Nov 23 12:27 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas   1327629 Nov 23 12:27 log.47523642._000111.job.log.tgz.1
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas      7823 Nov 23 12:28 heartbeat.json
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas        95 Nov 23 12:28 pilot_heartbeat.json
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas       893 Nov 23 12:28 pilotlog.txt
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas   9793541 Nov 23 12:28 log.47523642._000111.job.log.1
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 12:28 boinc_mmap_file
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas       357 Nov 23 12:28 output.list
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas       620 Nov 23 12:28 runtime_log
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas  11141120 Nov 23 12:28 result.tar.gz
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas      9333 Nov 23 12:28 runtime_log.err
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas       659 Nov 23 12:28 awYMDmuklg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKfJKDmG1YVTn.diag
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas        29 Nov 23 12:28 wrapper_checkpoint.txt
[2025-11-23 12:28:57] -rw-r--r--. 1 boincer umatlas     21296 Nov 23 12:28 stderr.txt
[2025-11-23 12:28:57] HITS file was successfully produced:
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas 340208359 Nov 23 12:21 shared/HITS.pool.root.1
[2025-11-23 12:28:57]  *** Contents of shared directory: ***
[2025-11-23 12:28:57] total 629496
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas 292638168 Nov 22 10:35 ATLAS.root_0
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas    589958 Nov 22 10:35 input.tar.gz
[2025-11-23 12:28:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 22 10:35 start_atlas.sh
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas 340208359 Nov 23 12:21 HITS.pool.root.1
[2025-11-23 12:28:57] -rw-------. 1 boincer umatlas  11141120 Nov 23 12:28 result.tar.gz
12:28:58 (2200390): run_atlas exited; CPU time 152123.073919
12:28:58 (2200390): called boinc_finish(0)

</stderr_txt>
]]>

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