Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:42 (29875): wrapper (7.7.26015): starting
14:02:42 (29875): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 14:02:42] Arguments: --nthreads 12
[2025-11-22 14:02:42] Threads: 12
[2025-11-22 14:02:42] Checking for CVMFS
[2025-11-22 14:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 14:02:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 14:02:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 14:02:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 14:02:49] 2.13.3.0 5957 1235 109604 153173 3 251 4695553 102400000 1537 130560 29 4560812 99.995 51345 9 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 14:02:49] CVMFS is ok
[2025-11-22 14:02:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 14:02:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 14:02:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 14:02:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 14:02:49] Further information can be found at the LHC@home message board.
[2025-11-22 14:02:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 14:02:49] Checking for apptainer binary...
[2025-11-22 14:02:49] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 14:02:49] apptainer is not installed, using version from CVMFS
[2025-11-22 14:02:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 14:02:50] crocidura-russula
[2025-11-22 14:02:50] apptainer works
[2025-11-22 14:02:50] Set ATHENA_PROC_NUMBER=12
[2025-11-22 14:02:50] Set ATHENA_CORE_NUMBER=12
[2025-11-22 14:02:50] Starting ATLAS job with PandaID=6893935720
[2025-11-22 14:02:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 16:00:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 16:00:25] 2025-11-22 15:59:31,556 | INFO     | time since job start (6983s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:33,435 | INFO     | monitor loop #540: job 0:6893935720 is in state 'finished'
[2025-11-22 16:00:25] 2025-11-22 15:59:33,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:00:25] 2025-11-22 15:59:33,561 | INFO     | time since job start (6985s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:35,567 | INFO     | time since job start (6987s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:35,938 | INFO     | monitor loop #541: job 0:6893935720 is in state 'finished'
[2025-11-22 16:00:25] 2025-11-22 15:59:35,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:00:25] 2025-11-22 15:59:37,572 | INFO     | time since job start (6989s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:38,442 | INFO     | monitor loop #542: job 0:6893935720 is in state 'finished'
[2025-11-22 16:00:25] 2025-11-22 15:59:38,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:00:25] 2025-11-22 15:59:39,578 | INFO     | time since job start (6991s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:40,945 | INFO     | monitor loop #543: job 0:6893935720 is in state 'finished'
[2025-11-22 16:00:25] 2025-11-22 15:59:40,945 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:00:25] 2025-11-22 15:59:41,583 | INFO     | time since job start (6993s) is within the limit (172800.0s)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,592 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 16:00:25] 2025-11-22 15:59:42,596 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4059.1764791666665
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | INFO     | using path: /virtma/boinc/slots/0/PanDA_Pilot-6893935720/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | INFO     | extracted standard info from prmon json
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 16:00:25] 2025-11-22 15:59:42,600 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 16:00:25] 2025-11-22 15:59:42,601 | INFO     | fitting pss+swap vs Time
[2025-11-22 16:00:25] 2025-11-22 15:59:42,601 | INFO     | sum of square deviations: 447383272.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | sum of deviations: 131710337703.99998
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | mean x: 1763823622.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | mean y: 2404994.292035398
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | intersect: -519270038665.4083
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | chi2: 8.99900678350304
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | sum of square deviations: 390582207.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | sum of deviations: 123923636006.49998
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | mean x: 1763823469.5
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | mean y: 2384074.861111111
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | intersect: -559622231938.5354
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | chi2: 8.677814452079414
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | current chi2=8.677814452079414 (change=3.569197569807763 %)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | right removable region: 107
[2025-11-22 16:00:25] 2025-11-22 15:59:42,602 | INFO     | sum of square deviations: 390582207.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | sum of deviations: 104270456079.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | mean x: 1763823774.5
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | mean y: 2478375.462962963
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | intersect: -470870761915.5323
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | chi2: 7.404392937827503
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | current chi2=7.404392937827503 (change=17.719887139087163 %)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | left removable region: 10
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | sum of square deviations: 282974608.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | sum of deviations: 74631824757.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | mean x: 1763823744.0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | mean y: 2529538.1958762887
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | intersect: -465188978261.1316
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | chi2: 6.231304337768064
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | current memory leak: 263.74 B/s (using 97 data points, chi2=6.23)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | could have reported an average CPU frequency of 3973 MHz (7 samples)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | ..............................
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . Timing measurements:
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . get job = 0 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . initial setup = 13 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . payload setup = 2 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . stage-in = 0 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,603 | INFO     | . payload execution = 6877 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,604 | INFO     | . stage-out = 0 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,604 | INFO     | . log creation = 0 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,604 | INFO     | ..............................
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | 
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | job summary report
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | --------------------------------------------------
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | PanDA job id: 6893935720
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | task id: 47523642
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | errors: (none)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | pilot state: finished 
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | transexitcode: 0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | exeerrorcode: 0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | exeerrordiag: 
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | exitcode: 0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | exitmsg: OK
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | cpuconsumptiontime: 61735 s
[2025-11-22 16:00:25] 2025-11-22 15:59:42,634 | INFO     | nevents: 400
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | neventsw: 0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | pid: 40609
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | pgrp: 40609
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | corecount: 12
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | event service: False
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | sizes: {0: 2298348, 1: 2298462, 2: 2298752, 11: 2298780, 6883: 2326026, 6884: 2335022, 6887: 2335206, 6982: 2335400}
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | --------------------------------------------------
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | 
[2025-11-22 16:00:25] 2025-11-22 15:59:42,635 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-11-22 16:00:25] 2025-11-22 15:59:42,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,648 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 16:00:25] 2025-11-22 15:59:42,649 | INFO     | job 6893935720 has completed (purged errors)
[2025-11-22 16:00:25] 2025-11-22 15:59:42,650 | INFO     | overall cleanup function is called
[2025-11-22 16:00:25] 2025-11-22 15:59:43,654 | INFO     | --- collectZombieJob: --- 10, [40609]
[2025-11-22 16:00:25] 2025-11-22 15:59:43,654 | INFO     | zombie collector waiting for pid 40609
[2025-11-22 16:00:25] 2025-11-22 15:59:43,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 16:00:25] 2025-11-22 15:59:43,654 | INFO     | collected zombie processes
[2025-11-22 16:00:25] 2025-11-22 15:59:43,654 | INFO     | will attempt to kill all subprocesses of pid=40609
[2025-11-22 16:00:25] 2025-11-22 15:59:43,746 | INFO     | process IDs to be killed: [40609] (in reverse order)
[2025-11-22 16:00:25] 2025-11-22 15:59:43,782 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 16:00:25] 2025-11-22 15:59:43,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 16:00:25] 2025-11-22 15:59:43,785 | INFO     | did not find any defunct processes belonging to 40609
[2025-11-22 16:00:25] 2025-11-22 15:59:43,787 | INFO     | did not find any defunct processes belonging to 40609
[2025-11-22 16:00:25] 2025-11-22 15:59:43,788 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 16:00:25] 2025-11-22 15:59:43,788 | INFO     | ready for new job
[2025-11-22 16:00:25] 2025-11-22 15:59:43,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 16:00:25] 2025-11-22 15:59:43,789 | INFO     | ***************************************
[2025-11-22 16:00:25] 2025-11-22 15:59:43,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 16:00:25] 2025-11-22 15:59:43,789 | INFO     | ***************************************
[2025-11-22 16:00:25] 2025-11-22 15:59:43,789 | INFO     | 
[2025-11-22 16:00:25] 2025-11-22 15:59:43,790 | INFO     | architecture information:
[2025-11-22 16:00:25] 2025-11-22 15:59:43,791 | INFO     | executing command: cat /etc/os-release
[2025-11-22 16:00:25] 2025-11-22 15:59:43,799 | INFO     | cat /etc/os-release:
[2025-11-22 16:00:25] NAME="CentOS Linux"
[2025-11-22 16:00:25] VERSION="7 (Core)"
[2025-11-22 16:00:25] ID="centos"
[2025-11-22 16:00:25] ID_LIKE="rhel fedora"
[2025-11-22 16:00:25] VERSION_ID="7"
[2025-11-22 16:00:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 16:00:25] ANSI_COLOR="0;31"
[2025-11-22 16:00:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 16:00:25] HOME_URL="https://www.centos.org/"
[2025-11-22 16:00:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 16:00:25] 
[2025-11-22 16:00:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 16:00:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 16:00:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 16:00:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 16:00:25] 
[2025-11-22 16:00:25] 2025-11-22 15:59:43,799 | INFO     | ***************************************
[2025-11-22 16:00:25] 2025-11-22 15:59:44,302 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-11-22 16:00:25] 2025-11-22 15:59:44,311 | INFO     | sufficient remaining disk space (959063261184 B)
[2025-11-22 16:00:25] 2025-11-22 15:59:44,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 16:00:25] 2025-11-22 15:59:44,311 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 16:00:25] 2025-11-22 15:59:44,312 | INFO     | update_server=False
[2025-11-22 16:00:25] 2025-11-22 15:59:44,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 16:00:25] 2025-11-22 15:59:44,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 16:00:25] 2025-11-22 15:59:44,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 16:00:25] 2025-11-22 15:59:44,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 16:00:25] 2025-11-22 15:59:44,452 | INFO     | aborting loop
[2025-11-22 16:00:25] 2025-11-22 15:59:44,858 | INFO     | all job control threads have been joined
[2025-11-22 16:00:25] 2025-11-22 15:59:45,158 | INFO     | all data control threads have been joined
[2025-11-22 16:00:25] 2025-11-22 15:59:45,317 | INFO     | [job] retrieve thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,317 | INFO     | [job] queue monitor thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,342 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,457 | INFO     | [job] job monitor thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 16:00:25] 2025-11-22 15:59:45,558 | INFO     | all payload control threads have been joined
[2025-11-22 16:00:25] 2025-11-22 15:59:45,698 | INFO     | [payload] validate_post thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,862 | INFO     | [job] control thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:45,947 | INFO     | [job] validate thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,074 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,163 | INFO     | [data] control thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,254 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,383 | INFO     | [payload] failed_post thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,471 | INFO     | [data] copytool_in thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:46,563 | INFO     | [payload] control thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:47,472 | INFO     | [data] copytool_out thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:48,318 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 16:00:25] 2025-11-22 15:59:55,324 | INFO     | job.realtimelogging is not enabled
[2025-11-22 16:00:25] 2025-11-22 15:59:56,329 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 16:00:25] 2025-11-22 16:00:14,730 | INFO     | PID=33802 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 16:00:25] 2025-11-22 16:00:14,730 | INFO     | .. there are 3 such processes running
[2025-11-22 16:00:25] 2025-11-22 16:00:14,730 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 16:00:25] 2025-11-22 16:00:14,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 16:00:25] 2025-11-22 16:00:14,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 16:00:25] 2025-11-22 16:00:18,480 | INFO     | [monitor] cgroup control has ended
[2025-11-22 16:00:25] 2025-11-22 16:00:19,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405096847168)>', '<ExcThread(monitor, started 140404427060992)>']
[2025-11-22 16:00:25] 2025-11-22 16:00:20,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 16:00:25] 2025-11-22 16:00:20,752 | INFO     | [monitor] control thread has ended
[2025-11-22 16:00:25] 2025-11-22 16:00:24,930 | INFO     | all workflow threads have been joined
[2025-11-22 16:00:25] 2025-11-22 16:00:24,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 16:00:25] 2025-11-22 16:00:24,930 | INFO     | traces error code: 0
[2025-11-22 16:00:25] 2025-11-22 16:00:24,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 16:00:25] 2025-11-22 16:00:24,975 [wrapper] ==== pilot stdout END ====
[2025-11-22 16:00:25] 2025-11-22 16:00:24,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 16:00:25] 2025-11-22 16:00:24,978 [wrapper] pilotpid: 33802
[2025-11-22 16:00:25] 2025-11-22 16:00:24,980 [wrapper] Pilot exit status: 0
[2025-11-22 16:00:25] 2025-11-22 16:00:24,986 [wrapper] pandaids: 6893935720
[2025-11-22 16:00:25] 2025-11-22 16:00:25,008 [wrapper] cleanup supervisor_pilot 43849 33803
[2025-11-22 16:00:25] 2025-11-22 16:00:25,009 [wrapper] Test setup, not cleaning
[2025-11-22 16:00:25] 2025-11-22 16:00:25,011 [wrapper] apfmon messages muted
[2025-11-22 16:00:25] 2025-11-22 16:00:25,012 [wrapper] ==== wrapper stdout END ====
[2025-11-22 16:00:25] 2025-11-22 16:00:25,014 [wrapper] ==== wrapper stderr END ====
[2025-11-22 16:00:25]  *** Error codes and diagnostics ***
[2025-11-22 16:00:25]     "exeErrorCode": 0,
[2025-11-22 16:00:25]     "exeErrorDiag": "",
[2025-11-22 16:00:25]     "pilotErrorCode": 0,
[2025-11-22 16:00:25]     "pilotErrorDiag": "",
[2025-11-22 16:00:25]  *** Listing of results directory ***
[2025-11-22 16:00:25] total 624324
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc    576529 Nov 21 18:54 pilot3.tar.gz
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc      5112 Nov 21 19:12 queuedata.json
[2025-11-22 16:00:25] -rwx------ 1 boinc boinc     36292 Nov 21 19:13 runpilot2-wrapper.sh
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc       100 Nov 22 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 16:00:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 14:02 run_atlas
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc       105 Nov 22 14:02 job.xml
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:02 start_atlas.sh
[2025-11-22 16:00:25] drwxrwx--x 2 boinc boinc        68 Nov 22 14:02 shared
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc    589964 Nov 22 14:02 input.tar.gz
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc      8919 Nov 22 14:02 init_data.xml
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc 292638168 Nov 22 14:02 EVNT.47523640._000005.pool.root.1
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:02 boinc_setup_complete
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc         0 Nov 22 14:02 boinc_lockfile
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc      2632 Nov 22 14:02 pandaJob.out
[2025-11-22 16:00:25] -rw------- 1 boinc boinc    989768 Nov 22 14:02 agis_schedconf.cvmfs.json
[2025-11-22 16:00:25] -rw------- 1 boinc boinc   1526164 Nov 22 14:03 agis_ddmendpoints.agis.ALL.json
[2025-11-22 16:00:25] drwx------ 5 boinc boinc      4096 Nov 22 14:03 pilot3
[2025-11-22 16:00:25] -rw------- 1 boinc boinc 339939221 Nov 22 15:57 HITS.47523642._000104.pool.root.1
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc       530 Nov 22 15:57 boinc_task_state.xml
[2025-11-22 16:00:25] -rw------- 1 boinc boinc      1024 Nov 22 15:58 memory_monitor_summary.json
[2025-11-22 16:00:25] -rw------- 1 boinc boinc    404719 Nov 22 15:58 log.47523642._000104.job.log.tgz.1
[2025-11-22 16:00:25] -rw------- 1 boinc boinc      7796 Nov 22 15:59 heartbeat.json
[2025-11-22 16:00:25] -rw------- 1 boinc boinc        95 Nov 22 16:00 pilot_heartbeat.json
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc      8192 Nov 22 16:00 boinc_mmap_file
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc        27 Nov 22 16:00 wrapper_checkpoint.txt
[2025-11-22 16:00:25] -rw------- 1 boinc boinc      4893 Nov 22 16:00 pilotlog.txt
[2025-11-22 16:00:25] -rw------- 1 boinc boinc   1009172 Nov 22 16:00 log.47523642._000104.job.log.1
[2025-11-22 16:00:25] -rw------- 1 boinc boinc       357 Nov 22 16:00 output.list
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc       620 Nov 22 16:00 runtime_log
[2025-11-22 16:00:25] -rw------- 1 boinc boinc   1433600 Nov 22 16:00 result.tar.gz
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc      8813 Nov 22 16:00 runtime_log.err
[2025-11-22 16:00:25] -rw------- 1 boinc boinc       655 Nov 22 16:00 NLPMDmuklg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDfJKDmKotGln.diag
[2025-11-22 16:00:25] -rw-r--r-- 1 boinc boinc     21883 Nov 22 16:00 stderr.txt
[2025-11-22 16:00:25] HITS file was successfully produced:
[2025-11-22 16:00:25] -rw------- 1 boinc boinc 339939221 Nov 22 15:57 shared/HITS.pool.root.1
[2025-11-22 16:00:25]  *** Contents of shared directory: ***
[2025-11-22 16:00:25] total 619748
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc     15847 Nov 22 14:02 start_atlas.sh
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc    589964 Nov 22 14:02 input.tar.gz
[2025-11-22 16:00:25] -rw-r--r-- 2 boinc boinc 292638168 Nov 22 14:02 ATLAS.root_0
[2025-11-22 16:00:25] -rw------- 1 boinc boinc 339939221 Nov 22 15:57 HITS.pool.root.1
[2025-11-22 16:00:25] -rw------- 1 boinc boinc   1433600 Nov 22 16:00 result.tar.gz
16:00:26 (29875): run_atlas exited; CPU time 61827.261135
16:00:26 (29875): called boinc_finish(0)

</stderr_txt>
]]>

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