Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:50:13 (9515): wrapper (7.7.26015): starting
13:50:13 (9515): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 13:50:13] Arguments: --nthreads 12
[2025-11-22 13:50:13] Threads: 12
[2025-11-22 13:50:13] Checking for CVMFS
[2025-11-22 13:50:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 13:50:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 13:50:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 13:50:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 13:50:16] 2.13.3.0 5957 1222 101556 153173 3 89 4695553 102400000 1341 130560 29 4499079 99.994 51343 9 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 13:50:16] CVMFS is ok
[2025-11-22 13:50:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 13:50:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 13:50:16] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 13:50:16] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 13:50:16] Further information can be found at the LHC@home message board.
[2025-11-22 13:50:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 13:50:16] Checking for apptainer binary...
[2025-11-22 13:50:16] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 13:50:16] apptainer is not installed, using version from CVMFS
[2025-11-22 13:50:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 13:50:17] crocidura-russula
[2025-11-22 13:50:17] apptainer works
[2025-11-22 13:50:17] Set ATHENA_PROC_NUMBER=12
[2025-11-22 13:50:17] Set ATHENA_CORE_NUMBER=12
[2025-11-22 13:50:17] Starting ATLAS job with PandaID=6893935731
[2025-11-22 13:50:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 15:42:51]  *** The last 200 lines of the pilot log: ***
[2025-11-22 15:42:51] 2025-11-22 15:42:17,759 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:42:51] 2025-11-22 15:42:17,759 | INFO     | job 6893935731 has state=finished
[2025-11-22 15:42:51] 2025-11-22 15:42:17,759 | INFO     | preparing for final server update for job 6893935731 in state='finished'
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | this job has now completed (state=finished)
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | log transfer has been attempted: DONE
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | job 6893935731 has finished - writing final server update
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | total number of processed events: 400 (read)
[2025-11-22 15:42:51] 2025-11-22 15:42:17,760 | INFO     | executing command: lscpu
[2025-11-22 15:42:51] 2025-11-22 15:42:17,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 15:42:51] 2025-11-22 15:42:18,596 | INFO     | time since job start (6702s) is within the limit (172800.0s)
[2025-11-22 15:42:51] 2025-11-22 15:42:19,369 | INFO     | monitor loop #492: job 0:6893935731 is in state 'finished'
[2025-11-22 15:42:51] 2025-11-22 15:42:19,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,068 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 15:42:51] 2025-11-22 15:42:20,071 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 4303.797187499999
[2025-11-22 15:42:51] 2025-11-22 15:42:20,074 | INFO     | using path: /virtma/boinc/slots/2/PanDA_Pilot-6893935731/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,075 | INFO     | extracted standard info from prmon json
[2025-11-22 15:42:51] 2025-11-22 15:42:20,075 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 15:42:51] 2025-11-22 15:42:20,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 15:42:51] 2025-11-22 15:42:20,075 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 15:42:51] 2025-11-22 15:42:20,075 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | fitting pss+swap vs Time
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | sum of square deviations: 412686807.5
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | sum of deviations: 114483057779.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | mean x: 1763822778.5
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | mean y: 2429117.4727272727
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | intersect: -489297983188.3697
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | chi2: 7.010793762608524
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | sum of square deviations: 358927660.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,076 | INFO     | sum of deviations: 108019397922.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean x: 1763822626.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean y: 2410770.495238095
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | intersect: -530820591562.9582
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | chi2: 6.712323805474569
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | current chi2=6.712323805474569 (change=4.257291930705755 %)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | right removable region: 104
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | sum of square deviations: 358927660.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | sum of deviations: 89507937090.99998
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean x: 1763822931.0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean y: 2499542.1047619046
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | intersect: -439852573058.3497
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | chi2: 5.626550192043566
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | current chi2=5.626550192043566 (change=19.74446285879503 %)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | left removable region: 10
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | sum of square deviations: 257521107.5
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | sum of deviations: 64961670162.49999
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean x: 1763822900.5
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | mean y: 2545661.904255319
[2025-11-22 15:42:51] 2025-11-22 15:42:20,077 | INFO     | intersect: -444935279434.0252
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | chi2: 4.8858560096132715
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | current memory leak: 252.26 B/s (using 94 data points, chi2=4.89)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | could have reported an average CPU frequency of 3953 MHz (7 samples)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | ..............................
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . Timing measurements:
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . get job = 0 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . initial setup = 14 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . payload setup = 2 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . stage-in = 0 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . payload execution = 6680 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . stage-out = 0 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | . log creation = 0 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,078 | INFO     | ..............................
[2025-11-22 15:42:51] 2025-11-22 15:42:20,109 | INFO     | 
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | job summary report
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | --------------------------------------------------
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | PanDA job id: 6893935731
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | task id: 47523642
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | errors: (none)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | pilot state: finished 
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | transexitcode: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | exeerrorcode: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | exeerrordiag: 
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | exitcode: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | exitmsg: OK
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | cpuconsumptiontime: 58338 s
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | nevents: 400
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | neventsw: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | pid: 20234
[2025-11-22 15:42:51] 2025-11-22 15:42:20,110 | INFO     | pgrp: 20234
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | corecount: 12
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | event service: False
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | sizes: {0: 2298462, 2: 2298724, 11: 2298752, 6686: 2325914, 6687: 2334910, 6689: 2334966, 6691: 2335288}
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | --------------------------------------------------
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | 
[2025-11-22 15:42:51] 2025-11-22 15:42:20,111 | INFO     | executing command: ls -lF /virtma/boinc/slots/2
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | job 6893935731 has completed (purged errors)
[2025-11-22 15:42:51] 2025-11-22 15:42:20,128 | INFO     | overall cleanup function is called
[2025-11-22 15:42:51] 2025-11-22 15:42:21,134 | INFO     | --- collectZombieJob: --- 10, [20234]
[2025-11-22 15:42:51] 2025-11-22 15:42:21,134 | INFO     | zombie collector waiting for pid 20234
[2025-11-22 15:42:51] 2025-11-22 15:42:21,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 15:42:51] 2025-11-22 15:42:21,134 | INFO     | collected zombie processes
[2025-11-22 15:42:51] 2025-11-22 15:42:21,134 | INFO     | will attempt to kill all subprocesses of pid=20234
[2025-11-22 15:42:51] 2025-11-22 15:42:21,269 | INFO     | process IDs to be killed: [20234] (in reverse order)
[2025-11-22 15:42:51] 2025-11-22 15:42:21,322 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 15:42:51] 2025-11-22 15:42:21,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 15:42:51] 2025-11-22 15:42:21,327 | INFO     | did not find any defunct processes belonging to 20234
[2025-11-22 15:42:51] 2025-11-22 15:42:21,331 | INFO     | did not find any defunct processes belonging to 20234
[2025-11-22 15:42:51] 2025-11-22 15:42:21,331 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 15:42:51] 2025-11-22 15:42:21,332 | INFO     | ready for new job
[2025-11-22 15:42:51] 2025-11-22 15:42:21,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 15:42:51] 2025-11-22 15:42:21,333 | INFO     | ***************************************
[2025-11-22 15:42:51] 2025-11-22 15:42:21,333 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 15:42:51] 2025-11-22 15:42:21,333 | INFO     | ***************************************
[2025-11-22 15:42:51] 2025-11-22 15:42:21,333 | INFO     | 
[2025-11-22 15:42:51] 2025-11-22 15:42:21,335 | INFO     | architecture information:
[2025-11-22 15:42:51] 2025-11-22 15:42:21,335 | INFO     | executing command: cat /etc/os-release
[2025-11-22 15:42:51] 2025-11-22 15:42:21,347 | INFO     | cat /etc/os-release:
[2025-11-22 15:42:51] NAME="CentOS Linux"
[2025-11-22 15:42:51] VERSION="7 (Core)"
[2025-11-22 15:42:51] ID="centos"
[2025-11-22 15:42:51] ID_LIKE="rhel fedora"
[2025-11-22 15:42:51] VERSION_ID="7"
[2025-11-22 15:42:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 15:42:51] ANSI_COLOR="0;31"
[2025-11-22 15:42:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 15:42:51] HOME_URL="https://www.centos.org/"
[2025-11-22 15:42:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 15:42:51] 
[2025-11-22 15:42:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 15:42:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 15:42:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 15:42:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 15:42:51] 
[2025-11-22 15:42:51] 2025-11-22 15:42:21,347 | INFO     | ***************************************
[2025-11-22 15:42:51] 2025-11-22 15:42:21,850 | INFO     | executing command: df -mP /virtma/boinc/slots/2
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | INFO     | sufficient remaining disk space (959327502336 B)
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | INFO     | update_server=False
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 15:42:51] 2025-11-22 15:42:21,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:42:51] 2025-11-22 15:42:21,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 15:42:51] 2025-11-22 15:42:21,870 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 15:42:51] 2025-11-22 15:42:21,870 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 15:42:51] 2025-11-22 15:42:21,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 15:42:51] 2025-11-22 15:42:21,870 | INFO     | will abort loop
[2025-11-22 15:42:51] 2025-11-22 15:42:22,086 | INFO     | all data control threads have been joined
[2025-11-22 15:42:51] 2025-11-22 15:42:22,650 | INFO     | all payload control threads have been joined
[2025-11-22 15:42:51] 2025-11-22 15:42:22,866 | INFO     | [job] retrieve thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:22,866 | INFO     | [job] queue monitor thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:22,874 | INFO     | [job] job monitor thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:22,965 | INFO     | [data] copytool_in thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,090 | INFO     | [data] control thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,091 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,227 | INFO     | all job control threads have been joined
[2025-11-22 15:42:51] 2025-11-22 15:42:23,654 | INFO     | [payload] control thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,657 | INFO     | [payload] failed_post thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 15:42:51] 2025-11-22 15:42:23,776 | INFO     | [job] validate thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,867 | INFO     | [data] copytool_out thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:23,998 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:24,094 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:24,233 | INFO     | [job] control thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:24,246 | INFO     | [payload] validate_post thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:27,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 15:42:51] 2025-11-22 15:42:45,722 | INFO     | [monitor] cgroup control has ended
[2025-11-22 15:42:51] 2025-11-22 15:42:46,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258418554688)>', '<ExcThread(monitor, started 140257458648832)>']
[2025-11-22 15:42:51] 2025-11-22 15:42:51,470 | INFO     | all workflow threads have been joined
[2025-11-22 15:42:51] 2025-11-22 15:42:51,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 15:42:51] 2025-11-22 15:42:51,470 | INFO     | traces error code: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:51,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 15:42:51] 2025-11-22 15:42:51,752 | INFO     | PID=13444 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 15:42:51] 2025-11-22 15:42:51,753 | INFO     | .. there are 3 such processes running
[2025-11-22 15:42:51] 2025-11-22 15:42:51,753 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 15:42:51] 2025-11-22 15:42:51,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 15:42:51] 2025-11-22 15:42:51,754 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 15:42:51] 2025-11-22 15:42:51,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 15:42:51] 2025-11-22 15:42:51,754 | INFO     | [monitor] control thread has ended
[2025-11-22 15:42:51] 2025-11-22 15:42:51,837 [wrapper] ==== pilot stdout END ====
[2025-11-22 15:42:51] 2025-11-22 15:42:51,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 15:42:51] 2025-11-22 15:42:51,841 [wrapper] pilotpid: 13444
[2025-11-22 15:42:51] 2025-11-22 15:42:51,842 [wrapper] Pilot exit status: 0
[2025-11-22 15:42:51] 2025-11-22 15:42:51,849 [wrapper] pandaids: 6893935731
[2025-11-22 15:42:51] 2025-11-22 15:42:51,879 [wrapper] cleanup supervisor_pilot 19162 13445
[2025-11-22 15:42:51] 2025-11-22 15:42:51,881 [wrapper] Test setup, not cleaning
[2025-11-22 15:42:51] 2025-11-22 15:42:51,883 [wrapper] apfmon messages muted
[2025-11-22 15:42:51] 2025-11-22 15:42:51,885 [wrapper] ==== wrapper stdout END ====
[2025-11-22 15:42:51] 2025-11-22 15:42:51,887 [wrapper] ==== wrapper stderr END ====
[2025-11-22 15:42:51]  *** Error codes and diagnostics ***
[2025-11-22 15:42:51]     "exeErrorCode": 0,
[2025-11-22 15:42:51]     "exeErrorDiag": "",
[2025-11-22 15:42:51]     "pilotErrorCode": 0,
[2025-11-22 15:42:51]     "pilotErrorDiag": "",
[2025-11-22 15:42:51]  *** Listing of results directory ***
[2025-11-22 15:42:51] total 623000
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc    576529 Nov 21 18:54 pilot3.tar.gz
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc      5112 Nov 21 19:12 queuedata.json
[2025-11-22 15:42:51] -rwx------ 1 boinc boinc     36292 Nov 21 19:13 runpilot2-wrapper.sh
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc       100 Nov 22 13:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 15:42:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 13:50 run_atlas
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc       105 Nov 22 13:50 job.xml
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:50 start_atlas.sh
[2025-11-22 15:42:51] drwxrwx--x 2 boinc boinc        68 Nov 22 13:50 shared
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc    589958 Nov 22 13:50 input.tar.gz
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc      8919 Nov 22 13:50 init_data.xml
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc 292638168 Nov 22 13:50 EVNT.47523640._000005.pool.root.1
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc         0 Nov 22 13:50 boinc_setup_complete
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc         0 Nov 22 13:50 boinc_lockfile
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc      2632 Nov 22 13:50 pandaJob.out
[2025-11-22 15:42:51] -rw------- 1 boinc boinc    989768 Nov 22 13:50 agis_schedconf.cvmfs.json
[2025-11-22 15:42:51] -rw------- 1 boinc boinc   1526164 Nov 22 13:50 agis_ddmendpoints.agis.ALL.json
[2025-11-22 15:42:51] drwx------ 5 boinc boinc      4096 Nov 22 13:50 pilot3
[2025-11-22 15:42:51] -rw------- 1 boinc boinc 338644127 Nov 22 15:41 HITS.47523642._000115.pool.root.1
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc       530 Nov 22 15:41 boinc_task_state.xml
[2025-11-22 15:42:51] -rw------- 1 boinc boinc      1024 Nov 22 15:42 memory_monitor_summary.json
[2025-11-22 15:42:51] -rw------- 1 boinc boinc    415401 Nov 22 15:42 log.47523642._000115.job.log.tgz.1
[2025-11-22 15:42:51] -rw------- 1 boinc boinc      7796 Nov 22 15:42 heartbeat.json
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc      8192 Nov 22 15:42 boinc_mmap_file
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc        27 Nov 22 15:42 wrapper_checkpoint.txt
[2025-11-22 15:42:51] -rw------- 1 boinc boinc       820 Nov 22 15:42 pilotlog.txt
[2025-11-22 15:42:51] -rw------- 1 boinc boinc        95 Nov 22 15:42 pilot_heartbeat.json
[2025-11-22 15:42:51] -rw------- 1 boinc boinc    967599 Nov 22 15:42 log.47523642._000115.job.log.1
[2025-11-22 15:42:51] -rw------- 1 boinc boinc       357 Nov 22 15:42 output.list
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc       620 Nov 22 15:42 runtime_log
[2025-11-22 15:42:51] -rw------- 1 boinc boinc   1402880 Nov 22 15:42 result.tar.gz
[2025-11-22 15:42:51] -rw------- 1 boinc boinc       654 Nov 22 15:42 yZeMDmuklg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOfJKDmkqPBvm.diag
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc      8813 Nov 22 15:42 runtime_log.err
[2025-11-22 15:42:51] -rw-r--r-- 1 boinc boinc     21945 Nov 22 15:42 stderr.txt
[2025-11-22 15:42:51] HITS file was successfully produced:
[2025-11-22 15:42:51] -rw------- 1 boinc boinc 338644127 Nov 22 15:41 shared/HITS.pool.root.1
[2025-11-22 15:42:51]  *** Contents of shared directory: ***
[2025-11-22 15:42:51] total 618456
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc     15847 Nov 22 13:50 start_atlas.sh
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc    589958 Nov 22 13:50 input.tar.gz
[2025-11-22 15:42:51] -rw-r--r-- 2 boinc boinc 292638168 Nov 22 13:50 ATLAS.root_0
[2025-11-22 15:42:51] -rw------- 1 boinc boinc 338644127 Nov 22 15:41 HITS.pool.root.1
[2025-11-22 15:42:51] -rw------- 1 boinc boinc   1402880 Nov 22 15:42 result.tar.gz
15:42:53 (9515): run_atlas exited; CPU time 58425.672753
15:42:53 (9515): called boinc_finish(0)

</stderr_txt>
]]>

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