Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:04 (1993146): wrapper (7.7.26015): starting
00:00:04 (1993146): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:00:04] Arguments: --nthreads 9
[2025-11-23 00:00:04] Threads: 9
[2025-11-23 00:00:04] Checking for CVMFS
[2025-11-23 00:00:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:00:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:00:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:00:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:00:05] 2.13.3.0 9158 25237 311672 153197 2 145 22090430 32935937 25039 16776704 0 153790068 99.805 81652339 34085 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:00:05] CVMFS is ok
[2025-11-23 00:00:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:00:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:00:05] Further information can be found at the LHC@home message board.
[2025-11-23 00:00:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:00:05] Checking for apptainer binary...
[2025-11-23 00:00:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:00:05] Running /usr/bin/apptainer --version
[2025-11-23 00:00:05] apptainer version 1.4.4-1.el9
[2025-11-23 00:00:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:00:06] c-8-16.aglt2.org
[2025-11-23 00:00:06] apptainer works
[2025-11-23 00:00:06] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:00:06] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:00:06] Starting ATLAS job with PandaID=6895329343
[2025-11-23 00:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:02 (1993146): BOINC client no longer exists - exiting
01:20:02 (1993146): timer handler: client dead, exiting
01:27:42 (3178438): wrapper (7.7.26015): starting
01:27:42 (3178438): wrapper: running run_atlas (--nthreads 11)
[2025-11-24 01:27:42] Arguments: --nthreads 11
[2025-11-24 01:27:42] Threads: 11
[2025-11-24 01:27:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 01:27:42] Checking for CVMFS
[2025-11-24 01:27:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:27:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:27:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:27:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:27:43] 2.13.3.0 9158 26764 308848 153236 0 72 25728780 32935937 24043 16776704 0 159866166 99.794 87234786 33861 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 01:27:43] CVMFS is ok
[2025-11-24 01:27:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:27:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:27:43] Further information can be found at the LHC@home message board.
[2025-11-24 01:27:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:27:43] Checking for apptainer binary...
[2025-11-24 01:27:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:27:43] Running /usr/bin/apptainer --version
[2025-11-24 01:27:43] apptainer version 1.4.4-1.el9
[2025-11-24 01:27:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:27:43] c-8-16.aglt2.org
[2025-11-24 01:27:43] apptainer works
[2025-11-24 01:27:43] Set ATHENA_PROC_NUMBER=11
[2025-11-24 01:27:43] Set ATHENA_CORE_NUMBER=11
[2025-11-24 01:27:43] Starting ATLAS job with PandaID=6895329343
[2025-11-24 01:27:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:38:27]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:38:28] 2025-11-24 17:37:53,418 | INFO     | mean x: 1763985773.4840667
[2025-11-24 12:38:28] 2025-11-24 17:37:53,418 | INFO     | mean y: 3377480.8406676785
[2025-11-24 12:38:28] 2025-11-24 17:37:53,419 | INFO     | intersect: -21348728488.29882
[2025-11-24 12:38:28] 2025-11-24 17:37:53,420 | INFO     | chi2: 7.849309162801411
[2025-11-24 12:38:28] 2025-11-24 17:37:53,421 | INFO     | sum of square deviations: 86734627473.9939
[2025-11-24 12:38:28] 2025-11-24 17:37:53,431 | INFO     | sum of deviations: 1348776154195.1567
[2025-11-24 12:38:28] 2025-11-24 17:37:53,432 | INFO     | mean x: 1763985621.0030582
[2025-11-24 12:38:28] 2025-11-24 17:37:53,432 | INFO     | mean y: 3398375.9220183487
[2025-11-24 12:38:28] 2025-11-24 17:37:53,432 | INFO     | intersect: -27427649767.62866
[2025-11-24 12:38:28] 2025-11-24 17:37:53,433 | INFO     | chi2: 4.247296797922125
[2025-11-24 12:38:28] 2025-11-24 17:37:53,433 | INFO     | current chi2=4.247296797922125 (change=45.889546330389805 %)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,434 | INFO     | sum of square deviations: 84760885059.9261
[2025-11-24 12:38:28] 2025-11-24 17:37:53,445 | INFO     | sum of deviations: 1530157253998.2522
[2025-11-24 12:38:28] 2025-11-24 17:37:53,445 | INFO     | mean x: 1763985468.522342
[2025-11-24 12:38:28] 2025-11-24 17:37:53,445 | INFO     | mean y: 3412373.4653312787
[2025-11-24 12:38:28] 2025-11-24 17:37:53,445 | INFO     | intersect: -31841172055.999332
[2025-11-24 12:38:28] 2025-11-24 17:37:53,447 | INFO     | chi2: 2.436938569898689
[2025-11-24 12:38:28] 2025-11-24 17:37:53,447 | INFO     | current chi2=2.436938569898689 (change=42.62377493631019 %)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,448 | INFO     | sum of square deviations: 82817092232.31514
[2025-11-24 12:38:28] 2025-11-24 17:37:53,458 | INFO     | sum of deviations: 1549395438037.2075
[2025-11-24 12:38:28] 2025-11-24 17:37:53,459 | INFO     | mean x: 1763985316.0326087
[2025-11-24 12:38:28] 2025-11-24 17:37:53,459 | INFO     | mean y: 3413866.6568322983
[2025-11-24 12:38:28] 2025-11-24 17:37:53,459 | INFO     | intersect: -32998358204.24291
[2025-11-24 12:38:28] 2025-11-24 17:37:53,460 | INFO     | chi2: 2.237590731740712
[2025-11-24 12:38:28] 2025-11-24 17:37:53,460 | INFO     | current chi2=2.237590731740712 (change=8.180257008541036 %)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,460 | INFO     | right removable region: 643
[2025-11-24 12:38:28] 2025-11-24 17:37:53,461 | INFO     | sum of square deviations: 86733788855.99379
[2025-11-24 12:38:28] 2025-11-24 17:37:53,473 | INFO     | sum of deviations: 877329926081.1025
[2025-11-24 12:38:28] 2025-11-24 17:37:53,473 | INFO     | mean x: 1763985925.9969418
[2025-11-24 12:38:28] 2025-11-24 17:37:53,473 | INFO     | mean y: 3392418.0519877677
[2025-11-24 12:38:28] 2025-11-24 17:37:53,473 | INFO     | intersect: -17839684224.575905
[2025-11-24 12:38:28] 2025-11-24 17:37:53,474 | INFO     | chi2: 5.8675023968273425
[2025-11-24 12:38:28] 2025-11-24 17:37:53,474 | INFO     | current chi2=5.8675023968273425 (change=25.248168021792683 %)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,475 | INFO     | sum of square deviations: 84759527236.24677
[2025-11-24 12:38:28] 2025-11-24 17:37:53,485 | INFO     | sum of deviations: 808578513616.2942
[2025-11-24 12:38:28] 2025-11-24 17:37:53,486 | INFO     | mean x: 1763986078.4976888
[2025-11-24 12:38:28] 2025-11-24 17:37:53,486 | INFO     | mean y: 3397727.1972265025
[2025-11-24 12:38:28] 2025-11-24 17:37:53,486 | INFO     | intersect: -16824459717.264091
[2025-11-24 12:38:28] 2025-11-24 17:37:53,487 | INFO     | chi2: 5.772195356449267
[2025-11-24 12:38:28] 2025-11-24 17:37:53,487 | INFO     | current chi2=5.772195356449267 (change=1.6243204336756516 %)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,487 | INFO     | left removable region: 20
[2025-11-24 12:38:28] 2025-11-24 17:37:53,488 | INFO     | sum of square deviations: 74975966513.94856
[2025-11-24 12:38:28] 2025-11-24 17:37:53,498 | INFO     | sum of deviations: 1186083065299.1453
[2025-11-24 12:38:28] 2025-11-24 17:37:53,498 | INFO     | mean x: 1763985895.553772
[2025-11-24 12:38:28] 2025-11-24 17:37:53,498 | INFO     | mean y: 3442468.130016051
[2025-11-24 12:38:28] 2025-11-24 17:37:53,498 | INFO     | intersect: -27901950358.698505
[2025-11-24 12:38:28] 2025-11-24 17:37:53,499 | INFO     | chi2: 0.09240827200504687
[2025-11-24 12:38:28] 2025-11-24 17:37:53,499 | INFO     | current memory leak: 15.82 B/s (using 623 data points, chi2=0.09)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,500 | INFO     | could have reported an average CPU frequency of 2600 MHz (25 samples)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,500 | INFO     | ..............................
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . Timing measurements:
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . get job = 0 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . initial setup = 2 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . payload setup = 5 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . stage-in = 0 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . payload execution = 40160 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . stage-out = 4 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | . log creation = 1 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,501 | INFO     | ..............................
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | 
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | job summary report
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | --------------------------------------------------
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | PanDA job id: 6895329343
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | task id: 47556137
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | errors: (none)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:38:28] 2025-11-24 17:37:53,963 | INFO     | pilot state: finished 
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | transexitcode: 0
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | exeerrorcode: 0
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | exeerrordiag: 
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | exitcode: 0
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | exitmsg: OK
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | cpuconsumptiontime: 293208 s
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | nevents: 1000
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | neventsw: 0
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | pid: 3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | pgrp: 3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | corecount: 11
[2025-11-24 12:38:28] 2025-11-24 17:37:53,964 | INFO     | event service: False
[2025-11-24 12:38:28] 2025-11-24 17:37:53,965 | INFO     | sizes: {0: 2298692, 1: 2298834, 5: 2299096, 11: 2299152, 40169: 2343322, 40173: 2353107, 40176: 2353319, 40182: 2353629}
[2025-11-24 12:38:28] 2025-11-24 17:37:53,965 | INFO     | --------------------------------------------------
[2025-11-24 12:38:28] 2025-11-24 17:37:53,965 | INFO     | 
[2025-11-24 12:38:28] 2025-11-24 17:37:53,965 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 12:38:28] 2025-11-24 17:37:53,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,986 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:38:28] 2025-11-24 17:37:53,988 | INFO     | job 6895329343 has completed (purged errors)
[2025-11-24 12:38:28] 2025-11-24 17:37:53,989 | INFO     | overall cleanup function is called
[2025-11-24 12:38:28] 2025-11-24 17:37:54,843 | INFO     | PID=3187939 has CPU usage=20.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 12:38:28] 2025-11-24 17:37:54,844 | INFO     | .. there are 42 such processes running
[2025-11-24 12:38:28] 2025-11-24 17:37:55,005 | INFO     | --- collectZombieJob: --- 10, [3202928]
[2025-11-24 12:38:28] 2025-11-24 17:37:55,006 | INFO     | zombie collector waiting for pid 3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:55,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:38:28] 2025-11-24 17:37:55,006 | INFO     | collected zombie processes
[2025-11-24 12:38:28] 2025-11-24 17:37:55,006 | INFO     | will attempt to kill all subprocesses of pid=3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:55,456 | INFO     | process IDs to be killed: [3202928] (in reverse order)
[2025-11-24 12:38:28] 2025-11-24 17:37:55,602 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:38:28] 2025-11-24 17:37:55,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:38:28] 2025-11-24 17:37:55,619 | INFO     | did not find any defunct processes belonging to 3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:55,634 | INFO     | did not find any defunct processes belonging to 3202928
[2025-11-24 12:38:28] 2025-11-24 17:37:55,636 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:38:28] 2025-11-24 17:37:55,636 | INFO     | ready for new job
[2025-11-24 12:38:28] 2025-11-24 17:37:55,636 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:38:28] 2025-11-24 17:37:55,640 | INFO     | ***************************************
[2025-11-24 12:38:28] 2025-11-24 17:37:55,640 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:38:28] 2025-11-24 17:37:55,640 | INFO     | ***************************************
[2025-11-24 12:38:28] 2025-11-24 17:37:55,640 | INFO     | 
[2025-11-24 12:38:28] 2025-11-24 17:37:55,642 | INFO     | architecture information:
[2025-11-24 12:38:28] 2025-11-24 17:37:55,643 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:38:28] 2025-11-24 17:37:55,658 | INFO     | cat /etc/os-release:
[2025-11-24 12:38:28] NAME="CentOS Linux"
[2025-11-24 12:38:28] VERSION="7 (Core)"
[2025-11-24 12:38:28] ID="centos"
[2025-11-24 12:38:28] ID_LIKE="rhel fedora"
[2025-11-24 12:38:28] VERSION_ID="7"
[2025-11-24 12:38:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:38:28] ANSI_COLOR="0;31"
[2025-11-24 12:38:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:38:28] HOME_URL="https://www.centos.org/"
[2025-11-24 12:38:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:38:28] 
[2025-11-24 12:38:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:38:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:38:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:38:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:38:28] 
[2025-11-24 12:38:28] 2025-11-24 17:37:55,659 | INFO     | ***************************************
[2025-11-24 12:38:28] 2025-11-24 17:37:56,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 12:38:28] 2025-11-24 17:37:56,204 | INFO     | sufficient remaining disk space (71575797760 B)
[2025-11-24 12:38:28] 2025-11-24 17:37:56,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:38:28] 2025-11-24 17:37:56,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:38:28] 2025-11-24 17:37:56,204 | INFO     | update_server=False
[2025-11-24 12:38:28] 2025-11-24 17:37:56,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:38:28] 2025-11-24 17:37:56,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:38:28] 2025-11-24 17:37:56,361 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 12:38:28] 2025-11-24 17:37:56,362 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 12:38:28] 2025-11-24 17:37:56,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:38:28] 2025-11-24 17:37:56,362 | INFO     | will abort loop
[2025-11-24 12:38:28] 2025-11-24 17:37:57,122 | INFO     | all data control threads have been joined
[2025-11-24 12:38:28] 2025-11-24 17:37:57,215 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,372 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,426 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,442 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,450 | INFO     | all job control threads have been joined
[2025-11-24 12:38:28] 2025-11-24 17:37:57,484 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,534 | INFO     | all payload control threads have been joined
[2025-11-24 12:38:28] 2025-11-24 17:37:57,627 | INFO     | [job] validate thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,640 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:57,937 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,078 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:38:28] 2025-11-24 17:37:58,131 | INFO     | [data] control thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,221 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,276 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,455 | INFO     | [job] control thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,541 | INFO     | [payload] control thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:37:58,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:38:28] 2025-11-24 17:37:59,625 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:38:02,089 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:38:06,115 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:38:28] 2025-11-24 17:38:06,461 | INFO     | job.realtimelogging is not enabled
[2025-11-24 12:38:28] 2025-11-24 17:38:07,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:38:28] 2025-11-24 17:38:08,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260050900800)>', '<ExcThread(monitor, started 140259203479296)>']
[2025-11-24 12:38:28] 2025-11-24 17:38:13,645 | INFO     | all workflow threads have been joined
[2025-11-24 12:38:28] 2025-11-24 17:38:13,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:38:28] 2025-11-24 17:38:13,646 | INFO     | traces error code: 0
[2025-11-24 12:38:28] 2025-11-24 17:38:13,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:38:28] 2025-11-24 17:38:27,533 | INFO     | PID=3187939 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | INFO     | .. there are 42 such processes running
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:38:28] 2025-11-24 17:38:27,534 | INFO     | [monitor] control thread has ended
[2025-11-24 12:38:28] 2025-11-24 17:38:27,700 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:38:28] 2025-11-24 17:38:27,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:38:28] 2025-11-24 17:38:27,706 [wrapper] pilotpid: 3187939
[2025-11-24 12:38:28] 2025-11-24 17:38:27,711 [wrapper] Pilot exit status: 0
[2025-11-24 12:38:28] 2025-11-24 17:38:27,745 [wrapper] pandaids: 6895329343 6895329343
[2025-11-24 12:38:28] 2025-11-24 17:38:27,840 [wrapper] cleanup supervisor_pilot  808112 3187940
[2025-11-24 12:38:28] 2025-11-24 17:38:27,843 [wrapper] Test setup, not cleaning
[2025-11-24 12:38:28] 2025-11-24 17:38:27,846 [wrapper] apfmon messages muted
[2025-11-24 12:38:28] 2025-11-24 17:38:27,849 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:38:28] 2025-11-24 17:38:27,852 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:38:28]  *** Error codes and diagnostics ***
[2025-11-24 12:38:28]     "exeErrorCode": 0,
[2025-11-24 12:38:28]     "exeErrorDiag": "",
[2025-11-24 12:38:28]     "pilotErrorCode": 0,
[2025-11-24 12:38:28]     "pilotErrorDiag": "",
[2025-11-24 12:38:28]  *** Listing of results directory ***
[2025-11-24 12:38:28] total 1719108
[2025-11-24 12:38:28] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:54 pilot3.tar.gz
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:12 queuedata.json
[2025-11-24 12:38:28] -rwx------. 1 boincer umatlas     36292 Nov 21 14:13 runpilot2-wrapper.sh
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:38:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:00 run_atlas
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:00 job.xml
[2025-11-24 12:38:28] -rw-r--r--. 3 boincer umatlas 411029064 Nov 23 00:00 EVNT.47483658._000113.pool.root.1
[2025-11-24 12:38:28] -rw-r--r--. 3 boincer umatlas 411029064 Nov 23 00:00 ATLAS.root_0
[2025-11-24 12:38:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 12:38:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:00 shared
[2025-11-24 12:38:28] -rw-r--r--. 2 boincer umatlas    590104 Nov 23 00:00 input.tar.gz
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:00 boinc_lockfile
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 01:27 pandaJob.out
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas        57 Nov 24 01:27 setup.sh.local
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas    989786 Nov 24 01:27 agis_schedconf.cvmfs.json
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas       533 Nov 24 12:24 boinc_task_state.xml
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas 919210946 Nov 24 12:36 HITS.47556137._001126.pool.root.1
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas      1069 Nov 24 12:37 memory_monitor_summary.json
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:37 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas   2241446 Nov 24 12:37 log.47556137._001126.job.log.tgz.1
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas        96 Nov 24 12:37 pilot_heartbeat.json
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas      8641 Nov 24 12:37 heartbeat.json
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas      6661 Nov 24 12:38 init_data.xml
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:38 boinc_mmap_file
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas        29 Nov 24 12:38 wrapper_checkpoint.txt
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas       823 Nov 24 12:38 pilotlog.txt
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas   5346796 Nov 24 12:38 log.47556137._001126.job.log.1
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas       353 Nov 24 12:38 output.list
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:38 runtime_log
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas   7608320 Nov 24 12:38 result.tar.gz
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas      9420 Nov 24 12:38 runtime_log.err
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas       787 Nov 24 12:38 pOMMDmkklg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAfJKDmmyf77n.diag
[2025-11-24 12:38:28] -rw-r--r--. 1 boincer umatlas     23567 Nov 24 12:38 stderr.txt
[2025-11-24 12:38:28] HITS file was successfully produced:
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas 919210946 Nov 24 12:36 shared/HITS.pool.root.1
[2025-11-24 12:38:28]  *** Contents of shared directory: ***
[2025-11-24 12:38:28] total 1307100
[2025-11-24 12:38:28] -rw-r--r--. 3 boincer umatlas 411029064 Nov 23 00:00 ATLAS.root_0
[2025-11-24 12:38:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:00 start_atlas.sh
[2025-11-24 12:38:28] -rw-r--r--. 2 boincer umatlas    590104 Nov 23 00:00 input.tar.gz
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas 919210946 Nov 24 12:36 HITS.pool.root.1
[2025-11-24 12:38:28] -rw-------. 1 boincer umatlas   7608320 Nov 24 12:38 result.tar.gz
12:38:29 (3178438): run_atlas exited; CPU time 294092.666518
12:38:29 (3178438): called boinc_finish(0)

</stderr_txt>
]]>

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