Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:42:29 (2981): wrapper (7.7.26015): starting
01:42:29 (2981): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:42:29] Arguments: --nthreads 8
[2025-11-22 01:42:29] Threads: 8
[2025-11-22 01:42:29] Checking for CVMFS
[2025-11-22 01:42:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:42:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:42:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:42:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:42:29] 2.11.2.0 2913 67195 83768 153162 0 81 10277345 20275201 1 130560 0 20157918 99.900 3330575 30410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 01:42:29] CVMFS is ok
[2025-11-22 01:42:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 01:42:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 01:42:29] Further information can be found at the LHC@home message board.
[2025-11-22 01:42:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:42:29] Checking for apptainer binary...
[2025-11-22 01:42:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:42:29] Running /usr/bin/apptainer --version
[2025-11-22 01:42:29] apptainer version 1.3.2-1.el7
[2025-11-22 01:42:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:42:31] c-115-15.aglt2.org
[2025-11-22 01:42:31] apptainer works
[2025-11-22 01:42:31] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:42:31] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:42:31] Starting ATLAS job with PandaID=6893852220
[2025-11-22 01:42:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:04:05]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:04:05] 2025-11-22 18:03:31,957 | INFO     | monitor loop #3015: job 0:6893852220 is in state 'finished'
[2025-11-22 13:04:05] 2025-11-22 18:03:31,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,360 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 13:04:05] 2025-11-22 18:03:32,365 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-22 13:04:05] 2025-11-22 18:03:32,367 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893852220/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,368 | INFO     | extracted standard info from prmon json
[2025-11-22 13:04:05] 2025-11-22 18:03:32,368 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:04:05] 2025-11-22 18:03:32,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:04:05] 2025-11-22 18:03:32,379 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:04:05] 2025-11-22 18:03:32,380 | INFO     | sum of square deviations: 92844685997.18718
[2025-11-22 13:04:05] 2025-11-22 18:03:32,389 | INFO     | sum of deviations: 738607927689.451
[2025-11-22 13:04:05] 2025-11-22 18:03:32,389 | INFO     | mean x: 1763814172.509716
[2025-11-22 13:04:05] 2025-11-22 18:03:32,389 | INFO     | mean y: 3000629.007473842
[2025-11-22 13:04:05] 2025-11-22 18:03:32,389 | INFO     | intersect: -14028681602.392975
[2025-11-22 13:04:05] 2025-11-22 18:03:32,390 | INFO     | chi2: 5.8741525544594815
[2025-11-22 13:04:05] 2025-11-22 18:03:32,390 | INFO     | sum of square deviations: 90778593120.87807
[2025-11-22 13:04:05] 2025-11-22 18:03:32,399 | INFO     | sum of deviations: 967384188443.6854
[2025-11-22 13:04:05] 2025-11-22 18:03:32,399 | INFO     | mean x: 1763814020.0135543
[2025-11-22 13:04:05] 2025-11-22 18:03:32,399 | INFO     | mean y: 3017510.1460843375
[2025-11-22 13:04:05] 2025-11-22 18:03:32,399 | INFO     | intersect: -18793107607.637657
[2025-11-22 13:04:05] 2025-11-22 18:03:32,400 | INFO     | chi2: 2.7467603541446173
[2025-11-22 13:04:05] 2025-11-22 18:03:32,400 | INFO     | current chi2=2.7467603541446173 (change=53.23988730835125 %)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,401 | INFO     | sum of square deviations: 88743303902.61372
[2025-11-22 13:04:05] 2025-11-22 18:03:32,409 | INFO     | sum of deviations: 993275439677.5844
[2025-11-22 13:04:05] 2025-11-22 18:03:32,409 | INFO     | mean x: 1763813867.5144157
[2025-11-22 13:04:05] 2025-11-22 18:03:32,409 | INFO     | mean y: 3019437.517450683
[2025-11-22 13:04:05] 2025-11-22 18:03:32,409 | INFO     | intersect: -19738785495.58919
[2025-11-22 13:04:05] 2025-11-22 18:03:32,410 | INFO     | chi2: 2.562858128749813
[2025-11-22 13:04:05] 2025-11-22 18:03:32,410 | INFO     | current chi2=2.562858128749813 (change=6.695240999722174 %)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,410 | INFO     | right removable region: 658
[2025-11-22 13:04:05] 2025-11-22 18:03:32,411 | INFO     | sum of square deviations: 90778385110.87802
[2025-11-22 13:04:05] 2025-11-22 18:03:32,419 | INFO     | sum of deviations: 541764810071.24133
[2025-11-22 13:04:05] 2025-11-22 18:03:32,419 | INFO     | mean x: 1763814325.0135543
[2025-11-22 13:04:05] 2025-11-22 18:03:32,419 | INFO     | mean y: 3015130.0843373495
[2025-11-22 13:04:05] 2025-11-22 18:03:32,419 | INFO     | intersect: -10523417253.844425
[2025-11-22 13:04:05] 2025-11-22 18:03:32,420 | INFO     | chi2: 3.4793267515032946
[2025-11-22 13:04:05] 2025-11-22 18:03:32,420 | INFO     | current chi2=3.4793267515032946 (change=40.76887313963453 %)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,421 | INFO     | sum of square deviations: 88743009028.5825
[2025-11-22 13:04:05] 2025-11-22 18:03:32,429 | INFO     | sum of deviations: 498508238521.2061
[2025-11-22 13:04:05] 2025-11-22 18:03:32,429 | INFO     | mean x: 1763814477.5159333
[2025-11-22 13:04:05] 2025-11-22 18:03:32,429 | INFO     | mean y: 3018369.59939302
[2025-11-22 13:04:05] 2025-11-22 18:03:32,430 | INFO     | intersect: -9905097862.761745
[2025-11-22 13:04:05] 2025-11-22 18:03:32,430 | INFO     | chi2: 3.4307657467752217
[2025-11-22 13:04:05] 2025-11-22 18:03:32,430 | INFO     | current chi2=3.4307657467752217 (change=1.3957011857851924 %)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,430 | INFO     | left removable region: 20
[2025-11-22 13:04:05] 2025-11-22 18:03:32,431 | INFO     | sum of square deviations: 80526923567.7741
[2025-11-22 13:04:05] 2025-11-22 18:03:32,439 | INFO     | sum of deviations: 708446142380.5957
[2025-11-22 13:04:05] 2025-11-22 18:03:32,439 | INFO     | mean x: 1763814447.0188088
[2025-11-22 13:04:05] 2025-11-22 18:03:32,439 | INFO     | mean y: 3040884.7836990594
[2025-11-22 13:04:05] 2025-11-22 18:03:32,439 | INFO     | intersect: -15514347406.027657
[2025-11-22 13:04:05] 2025-11-22 18:03:32,440 | INFO     | chi2: 0.08414599569239133
[2025-11-22 13:04:05] 2025-11-22 18:03:32,440 | INFO     | current memory leak: 8.80 B/s (using 638 data points, chi2=0.08)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,440 | INFO     | could have reported an average CPU frequency of 2387 MHz (26 samples)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,440 | INFO     | ..............................
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . Timing measurements:
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . get job = 0 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . initial setup = 2 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . payload setup = 8 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . stage-in = 0 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . payload execution = 40802 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . stage-out = 3 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | . log creation = 0 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,441 | INFO     | ..............................
[2025-11-22 13:04:05] 2025-11-22 18:03:32,532 | INFO     | 
[2025-11-22 13:04:05] 2025-11-22 18:03:32,532 | INFO     | job summary report
[2025-11-22 13:04:05] 2025-11-22 18:03:32,532 | INFO     | --------------------------------------------------
[2025-11-22 13:04:05] 2025-11-22 18:03:32,532 | INFO     | PanDA job id: 6893852220
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | task id: 47523449
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | errors: (none)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | pilot state: finished 
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | transexitcode: 0
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | exeerrorcode: 0
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | exeerrordiag: 
[2025-11-22 13:04:05] 2025-11-22 18:03:32,533 | INFO     | exitcode: 0
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | exitmsg: OK
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | cpuconsumptiontime: 316754 s
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | nevents: 1000
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | neventsw: 0
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | pid: 13147
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | pgrp: 13147
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | corecount: 8
[2025-11-22 13:04:05] 2025-11-22 18:03:32,534 | INFO     | event service: False
[2025-11-22 13:04:05] 2025-11-22 18:03:32,535 | INFO     | sizes: {0: 2298579, 1: 2298834, 7: 2299096, 12: 2299124, 40814: 2343054, 40818: 2352048, 40822: 2352232, 40828: 2352478}
[2025-11-22 13:04:05] 2025-11-22 18:03:32,535 | INFO     | --------------------------------------------------
[2025-11-22 13:04:05] 2025-11-22 18:03:32,535 | INFO     | 
[2025-11-22 13:04:05] 2025-11-22 18:03:32,535 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 13:04:05] 2025-11-22 18:03:32,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,565 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,565 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,565 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,565 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,565 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,566 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,566 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,566 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,566 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,566 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,567 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:04:05] 2025-11-22 18:03:32,568 | INFO     | job 6893852220 has completed (purged errors)
[2025-11-22 13:04:05] 2025-11-22 18:03:32,568 | INFO     | overall cleanup function is called
[2025-11-22 13:04:05] 2025-11-22 18:03:33,583 | INFO     | --- collectZombieJob: --- 10, [13147]
[2025-11-22 13:04:05] 2025-11-22 18:03:33,583 | INFO     | zombie collector waiting for pid 13147
[2025-11-22 13:04:05] 2025-11-22 18:03:33,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:04:05] 2025-11-22 18:03:33,584 | INFO     | collected zombie processes
[2025-11-22 13:04:05] 2025-11-22 18:03:33,584 | INFO     | will attempt to kill all subprocesses of pid=13147
[2025-11-22 13:04:05] 2025-11-22 18:03:33,670 | INFO     | process IDs to be killed: [13147] (in reverse order)
[2025-11-22 13:04:05] 2025-11-22 18:03:33,728 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:04:05] 2025-11-22 18:03:33,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:04:05] 2025-11-22 18:03:33,733 | INFO     | did not find any defunct processes belonging to 13147
[2025-11-22 13:04:05] 2025-11-22 18:03:33,737 | INFO     | did not find any defunct processes belonging to 13147
[2025-11-22 13:04:05] 2025-11-22 18:03:33,739 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:04:05] 2025-11-22 18:03:33,740 | INFO     | ready for new job
[2025-11-22 13:04:05] 2025-11-22 18:03:33,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:04:05] 2025-11-22 18:03:33,743 | INFO     | ***************************************
[2025-11-22 13:04:05] 2025-11-22 18:03:33,743 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:04:05] 2025-11-22 18:03:33,743 | INFO     | ***************************************
[2025-11-22 13:04:05] 2025-11-22 18:03:33,743 | INFO     | 
[2025-11-22 13:04:05] 2025-11-22 18:03:33,744 | INFO     | architecture information:
[2025-11-22 13:04:05] 2025-11-22 18:03:33,745 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:04:05] 2025-11-22 18:03:33,763 | INFO     | cat /etc/os-release:
[2025-11-22 13:04:05] NAME="CentOS Linux"
[2025-11-22 13:04:05] VERSION="7 (Core)"
[2025-11-22 13:04:05] ID="centos"
[2025-11-22 13:04:05] ID_LIKE="rhel fedora"
[2025-11-22 13:04:05] VERSION_ID="7"
[2025-11-22 13:04:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:04:05] ANSI_COLOR="0;31"
[2025-11-22 13:04:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:04:05] HOME_URL="https://www.centos.org/"
[2025-11-22 13:04:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:04:05] 
[2025-11-22 13:04:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:04:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:04:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:04:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:04:05] 
[2025-11-22 13:04:05] 2025-11-22 18:03:33,763 | INFO     | ***************************************
[2025-11-22 13:04:05] 2025-11-22 18:03:34,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 13:04:05] 2025-11-22 18:03:34,285 | INFO     | sufficient remaining disk space (17458790400 B)
[2025-11-22 13:04:05] 2025-11-22 18:03:34,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:04:05] 2025-11-22 18:03:34,286 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:04:05] 2025-11-22 18:03:34,286 | INFO     | update_server=False
[2025-11-22 13:04:05] 2025-11-22 18:03:34,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:04:05] 2025-11-22 18:03:34,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:04:05] 2025-11-22 18:03:34,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:04:05] 2025-11-22 18:03:34,332 | INFO     | all payload control threads have been joined
[2025-11-22 13:04:05] 2025-11-22 18:03:34,461 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 13:04:05] 2025-11-22 18:03:34,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 13:04:05] 2025-11-22 18:03:34,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:04:05] 2025-11-22 18:03:34,462 | INFO     | will abort loop
[2025-11-22 13:04:05] 2025-11-22 18:03:34,855 | INFO     | all data control threads have been joined
[2025-11-22 13:04:05] 2025-11-22 18:03:35,292 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,293 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,333 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,338 | INFO     | [payload] control thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,467 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,785 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,790 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,862 | INFO     | [data] control thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:35,958 | INFO     | all job control threads have been joined
[2025-11-22 13:04:05] 2025-11-22 18:03:36,293 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,361 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,439 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,452 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,560 | INFO     | [job] validate thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,607 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:36,963 | INFO     | [job] control thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:37,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:04:05] 2025-11-22 18:03:41,185 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:04:05] 2025-11-22 18:03:55,228 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:04:05] 2025-11-22 18:03:56,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140184982959936)>', '<ExcThread(monitor, started 140184553244416)>']
[2025-11-22 13:04:05] 2025-11-22 18:04:01,574 | INFO     | all workflow threads have been joined
[2025-11-22 13:04:05] 2025-11-22 18:04:01,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:04:05] 2025-11-22 18:04:01,575 | INFO     | traces error code: 0
[2025-11-22 13:04:05] 2025-11-22 18:04:01,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:04:05] 2025-11-22 18:04:05,043 | INFO     | PID=6726 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 13:04:05] 2025-11-22 18:04:05,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:04:05] 2025-11-22 18:04:05,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:04:05] 2025-11-22 18:04:05,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:04:05] 2025-11-22 18:04:05,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:04:05] 2025-11-22 18:04:05,044 | INFO     | [monitor] control thread has ended
[2025-11-22 13:04:05] 2025-11-22 18:04:05,176 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:04:05] 2025-11-22 18:04:05,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:04:05] 2025-11-22 18:04:05,185 [wrapper] pilotpid: 6726
[2025-11-22 13:04:05] 2025-11-22 18:04:05,189 [wrapper] Pilot exit status: 0
[2025-11-22 13:04:05] 2025-11-22 18:04:05,205 [wrapper] pandaids: 6893852220
[2025-11-22 13:04:05] 2025-11-22 18:04:05,248 [wrapper] cleanup supervisor_pilot 11234 6727
[2025-11-22 13:04:05] 2025-11-22 18:04:05,252 [wrapper] Test setup, not cleaning
[2025-11-22 13:04:05] 2025-11-22 18:04:05,257 [wrapper] apfmon messages muted
[2025-11-22 13:04:05] 2025-11-22 18:04:05,261 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:04:05] 2025-11-22 18:04:05,266 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:04:05]  *** Error codes and diagnostics ***
[2025-11-22 13:04:05]     "exeErrorCode": 0,
[2025-11-22 13:04:05]     "exeErrorDiag": "",
[2025-11-22 13:04:05]     "pilotErrorCode": 0,
[2025-11-22 13:04:05]     "pilotErrorDiag": "",
[2025-11-22 13:04:05]  *** Listing of results directory ***
[2025-11-22 13:04:05] total 1323572
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-22 13:04:05] -rwx------ 1 boincer umatlas     36292 Nov 20 06:52 runpilot2-wrapper.sh
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 06:52 queuedata.json
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas       100 Nov 22 01:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:04:05] -rwxr-xr-x 1 boincer umatlas      7986 Nov 22 01:42 run_atlas
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas       105 Nov 22 01:42 job.xml
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas 409606263 Nov 22 01:42 EVNT.47493127._000371.pool.root.1
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:42 start_atlas.sh
[2025-11-22 13:04:05] drwxrwx--x 2 boincer umatlas      4096 Nov 22 01:42 shared
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas    590101 Nov 22 01:42 input.tar.gz
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas         0 Nov 22 01:42 boinc_lockfile
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas      2785 Nov 22 01:42 pandaJob.out
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas        57 Nov 22 01:42 setup.sh.local
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas    989752 Nov 22 01:42 agis_schedconf.cvmfs.json
[2025-11-22 13:04:05] drwx------ 5 boincer umatlas      4096 Nov 22 01:42 pilot3
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas       532 Nov 22 12:54 boinc_task_state.xml
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas 926678784 Nov 22 13:02 HITS.47523449._003705.pool.root.1
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 13:03 init_data.xml
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas        95 Nov 22 13:03 pilot_heartbeat.json
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas      1062 Nov 22 13:03 memory_monitor_summary.json
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas   1526164 Nov 22 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas   1926658 Nov 22 13:03 log.47523449._003705.job.log.tgz.1
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas      8672 Nov 22 13:03 heartbeat.json
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 13:04 boinc_mmap_file
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas        29 Nov 22 13:04 wrapper_checkpoint.txt
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas       744 Nov 22 13:04 pilotlog.txt
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas   5638231 Nov 22 13:04 log.47523449._003705.job.log.1
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas       353 Nov 22 13:04 output.list
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas       620 Nov 22 13:04 runtime_log
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas   7587840 Nov 22 13:04 result.tar.gz
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 13:04 runtime_log.err
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas       668 Nov 22 13:04 m8HKDmpOIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcZGKDmNjxazm.diag
[2025-11-22 13:04:05] -rw-r--r-- 1 boincer umatlas     21293 Nov 22 13:04 stderr.txt
[2025-11-22 13:04:05] HITS file was successfully produced:
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas 926678784 Nov 22 13:02 shared/HITS.pool.root.1
[2025-11-22 13:04:05]  *** Contents of shared directory: ***
[2025-11-22 13:04:05] total 1312980
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas 409606263 Nov 22 01:42 ATLAS.root_0
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 22 01:42 start_atlas.sh
[2025-11-22 13:04:05] -rw-r--r-- 2 boincer umatlas    590101 Nov 22 01:42 input.tar.gz
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas 926678784 Nov 22 13:02 HITS.pool.root.1
[2025-11-22 13:04:05] -rw------- 1 boincer umatlas   7587840 Nov 22 13:04 result.tar.gz
13:04:06 (2981): run_atlas exited; CPU time 313471.671418
13:04:06 (2981): called boinc_finish(0)

</stderr_txt>
]]>

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