Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:22 (507169): wrapper (7.7.26015): starting
00:01:22 (507169): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:01:22] Arguments: --nthreads 9
[2025-11-23 00:01:22] Threads: 9
[2025-11-23 00:01:22] Checking for CVMFS
[2025-11-23 00:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:01:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:01:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:01:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:01:26] 2.13.3.0 9890 25149 336920 153197 1 329 32374597 32935937 20613 16776704 0 156285102 99.801 80254185 35014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:01:26] CVMFS is ok
[2025-11-23 00:01:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:01:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:01:26] Further information can be found at the LHC@home message board.
[2025-11-23 00:01:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:01:26] Checking for apptainer binary...
[2025-11-23 00:01:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:01:26] Running /usr/bin/apptainer --version
[2025-11-23 00:01:26] apptainer version 1.4.4-1.el9
[2025-11-23 00:01:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:01:27] c-8-36.aglt2.org
[2025-11-23 00:01:27] apptainer works
[2025-11-23 00:01:27] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:01:27] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:01:27] Starting ATLAS job with PandaID=6894289263
[2025-11-23 00:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:41:32]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:41:32] 2025-11-24 18:40:47,555 | INFO     | monitor loop #8685: job 0:6894289263 is in state 'finished'
[2025-11-24 13:41:32] 2025-11-24 18:40:47,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:41:32] 2025-11-24 18:40:49,191 | INFO     | time since job start (135452s) is within the limit (172800.0s)
[2025-11-24 13:41:32] 2025-11-24 18:40:50,059 | INFO     | monitor loop #8686: job 0:6894289263 is in state 'finished'
[2025-11-24 13:41:32] 2025-11-24 18:40:50,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:41:32] 2025-11-24 18:40:51,198 | INFO     | time since job start (135454s) is within the limit (172800.0s)
[2025-11-24 13:41:32] 2025-11-24 18:40:52,565 | INFO     | monitor loop #8687: job 0:6894289263 is in state 'finished'
[2025-11-24 13:41:32] 2025-11-24 18:40:52,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:41:32] 2025-11-24 18:40:53,204 | INFO     | time since job start (135456s) is within the limit (172800.0s)
[2025-11-24 13:41:32] 2025-11-24 18:40:55,072 | INFO     | monitor loop #8688: job 0:6894289263 is in state 'finished'
[2025-11-24 13:41:32] 2025-11-24 18:40:55,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:41:32] 2025-11-24 18:40:55,211 | INFO     | time since job start (135458s) is within the limit (172800.0s)
[2025-11-24 13:41:32] 2025-11-24 18:40:56,889 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:41:32] 2025-11-24 18:40:56,900 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1889249999995
[2025-11-24 13:41:32] 2025-11-24 18:40:56,915 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894289263/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:41:32] 2025-11-24 18:40:56,916 | INFO     | extracted standard info from prmon json
[2025-11-24 13:41:32] 2025-11-24 18:40:56,916 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:41:32] 2025-11-24 18:40:56,938 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:41:32] 2025-11-24 18:40:57,008 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:41:32] 2025-11-24 18:40:57,013 | INFO     | sum of square deviations: 3378800679806.8335
[2025-11-24 13:41:32] 2025-11-24 18:40:57,244 | INFO     | sum of deviations: 14418849228043.139
[2025-11-24 13:41:32] 2025-11-24 18:40:57,245 | INFO     | mean x: 1763942004.406405
[2025-11-24 13:41:32] 2025-11-24 18:40:57,245 | INFO     | mean y: 3064977.8078484437
[2025-11-24 13:41:32] 2025-11-24 18:40:57,245 | INFO     | intersect: -7524462159.425423
[2025-11-24 13:41:32] 2025-11-24 18:40:57,317 | INFO     | time since job start (135460s) is within the limit (172800.0s)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,248 | INFO     | chi2: 20.799925126452667
[2025-11-24 13:41:32] 2025-11-24 18:40:57,322 | INFO     | sum of square deviations: 3355991844971.905
[2025-11-24 13:41:32] 2025-11-24 18:40:57,473 | INFO     | sum of deviations: 15238791981020.816
[2025-11-24 13:41:32] 2025-11-24 18:40:57,474 | INFO     | mean x: 1763941851.909584
[2025-11-24 13:41:32] 2025-11-24 18:40:57,474 | INFO     | mean y: 3070459.629294756
[2025-11-24 13:41:32] 2025-11-24 18:40:57,474 | INFO     | intersect: -8006586354.09035
[2025-11-24 13:41:32] 2025-11-24 18:40:57,477 | INFO     | chi2: 17.440319992594763
[2025-11-24 13:41:32] 2025-11-24 18:40:57,477 | INFO     | current chi2=17.440319992594763 (change=16.152005901142733 %)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,478 | INFO     | right removable region: 2211
[2025-11-24 13:41:32] 2025-11-24 18:40:57,481 | INFO     | sum of square deviations: 3355989942991.9106
[2025-11-24 13:41:32] 2025-11-24 18:40:57,639 | INFO     | monitor loop #8689: job 0:6894289263 is in state 'finished'
[2025-11-24 13:41:32] 2025-11-24 18:40:57,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,688 | INFO     | sum of deviations: 13419374476866.367
[2025-11-24 13:41:32] 2025-11-24 18:40:57,689 | INFO     | mean x: 1763942156.909584
[2025-11-24 13:41:32] 2025-11-24 18:40:57,689 | INFO     | mean y: 3071659.6066907775
[2025-11-24 13:41:32] 2025-11-24 18:40:57,689 | INFO     | intersect: -7050286890.686837
[2025-11-24 13:41:32] 2025-11-24 18:40:57,692 | INFO     | chi2: 16.122116745382954
[2025-11-24 13:41:32] 2025-11-24 18:40:57,692 | INFO     | current chi2=16.122116745382954 (change=22.489544325910234 %)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,692 | INFO     | left removable region: 10
[2025-11-24 13:41:32] 2025-11-24 18:40:57,695 | INFO     | sum of square deviations: 3306170434414.9478
[2025-11-24 13:41:32] 2025-11-24 18:40:57,887 | INFO     | sum of deviations: 13563313147119.285
[2025-11-24 13:41:32] 2025-11-24 18:40:57,887 | INFO     | mean x: 1763942126.4166288
[2025-11-24 13:41:32] 2025-11-24 18:40:57,887 | INFO     | mean y: 3084191.467514766
[2025-11-24 13:41:32] 2025-11-24 18:40:57,887 | INFO     | intersect: -7233354434.001564
[2025-11-24 13:41:32] 2025-11-24 18:40:57,892 | INFO     | chi2: 8.60634423650599
[2025-11-24 13:41:32] 2025-11-24 18:40:57,892 | INFO     | current memory leak: 4.10 B/s (using 2201 data points, chi2=8.61)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,894 | INFO     | could have reported an average CPU frequency of 2600 MHz (77 samples)
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | ..............................
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . Timing measurements:
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . get job = 0 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . initial setup = 9 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . payload setup = 74 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . stage-in = 0 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . payload execution = 135260 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . stage-out = 6 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,895 | INFO     | . log creation = 1 s
[2025-11-24 13:41:32] 2025-11-24 18:40:57,896 | INFO     | ..............................
[2025-11-24 13:41:32] 2025-11-24 18:40:58,086 | INFO     | 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | job summary report
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | --------------------------------------------------
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | PanDA job id: 6894289263
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | task id: 47533967
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | errors: (none)
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | pilot state: finished 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | transexitcode: 0
[2025-11-24 13:41:32] 2025-11-24 18:40:58,087 | INFO     | exeerrorcode: 0
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | exeerrordiag: 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | exitcode: 0
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | exitmsg: OK
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | cpuconsumptiontime: 303095 s
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | nevents: 1000
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | neventsw: 0
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | pid: 532577
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | pgrp: 532577
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | corecount: 9
[2025-11-24 13:41:32] 2025-11-24 18:40:58,088 | INFO     | event service: False
[2025-11-24 13:41:32] 2025-11-24 18:40:58,089 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298835, 3: 2298863, 14: 2298891, 25: 2298919, 36: 2299075, 44: 2299365, 47: 2299393, 135338: 2388604, 135344: 2398389, 135345: 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,089 | INFO     | --------------------------------------------------
[2025-11-24 13:41:32] 2025-11-24 18:40:58,089 | INFO     | 
[2025-11-24 13:41:32] 2025-11-24 18:40:58,089 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 13:41:32] 2025-11-24 18:40:58,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,156 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,157 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:41:32] 2025-11-24 18:40:58,157 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,157 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:41:32] 2025-11-24 18:40:58,157 | INFO     | job 6894289263 has completed (purged errors)
[2025-11-24 13:41:32] 2025-11-24 18:40:58,157 | INFO     | overall cleanup function is called
[2025-11-24 13:41:32] 2025-11-24 18:40:59,176 | INFO     | --- collectZombieJob: --- 10, [532577]
[2025-11-24 13:41:32] 2025-11-24 18:40:59,185 | INFO     | zombie collector waiting for pid 532577
[2025-11-24 13:41:32] 2025-11-24 18:40:59,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:41:32] 2025-11-24 18:40:59,185 | INFO     | collected zombie processes
[2025-11-24 13:41:32] 2025-11-24 18:40:59,185 | INFO     | will attempt to kill all subprocesses of pid=532577
[2025-11-24 13:41:32] 2025-11-24 18:40:59,349 | INFO     | PID=514875 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:41:32] 2025-11-24 18:40:59,349 | INFO     | .. there are 41 such processes running
[2025-11-24 13:41:32] 2025-11-24 18:40:59,737 | INFO     | process IDs to be killed: [532577] (in reverse order)
[2025-11-24 13:41:32] 2025-11-24 18:40:59,872 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:41:32] 2025-11-24 18:40:59,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:41:32] 2025-11-24 18:40:59,888 | INFO     | did not find any defunct processes belonging to 532577
[2025-11-24 13:41:32] 2025-11-24 18:40:59,903 | INFO     | did not find any defunct processes belonging to 532577
[2025-11-24 13:41:32] 2025-11-24 18:40:59,905 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:41:32] 2025-11-24 18:40:59,905 | INFO     | ready for new job
[2025-11-24 13:41:32] 2025-11-24 18:40:59,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:41:32] 2025-11-24 18:40:59,914 | INFO     | ***************************************
[2025-11-24 13:41:32] 2025-11-24 18:40:59,914 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:41:32] 2025-11-24 18:40:59,914 | INFO     | ***************************************
[2025-11-24 13:41:32] 2025-11-24 18:40:59,914 | INFO     | 
[2025-11-24 13:41:32] 2025-11-24 18:40:59,916 | INFO     | architecture information:
[2025-11-24 13:41:32] 2025-11-24 18:40:59,917 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:41:32] 2025-11-24 18:40:59,936 | INFO     | cat /etc/os-release:
[2025-11-24 13:41:32] NAME="CentOS Linux"
[2025-11-24 13:41:32] VERSION="7 (Core)"
[2025-11-24 13:41:32] ID="centos"
[2025-11-24 13:41:32] ID_LIKE="rhel fedora"
[2025-11-24 13:41:32] VERSION_ID="7"
[2025-11-24 13:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:41:32] ANSI_COLOR="0;31"
[2025-11-24 13:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:41:32] HOME_URL="https://www.centos.org/"
[2025-11-24 13:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:41:32] 
[2025-11-24 13:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:41:32] 
[2025-11-24 13:41:32] 2025-11-24 18:40:59,937 | INFO     | ***************************************
[2025-11-24 13:41:32] 2025-11-24 18:41:00,442 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 13:41:32] 2025-11-24 18:41:00,554 | INFO     | sufficient remaining disk space (70410829824 B)
[2025-11-24 13:41:32] 2025-11-24 18:41:00,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:41:32] 2025-11-24 18:41:00,555 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:41:32] 2025-11-24 18:41:00,555 | INFO     | update_server=False
[2025-11-24 13:41:32] 2025-11-24 18:41:00,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:41:32] 2025-11-24 18:41:00,584 | INFO     | all payload control threads have been joined
[2025-11-24 13:41:32] 2025-11-24 18:41:00,677 | INFO     | all data control threads have been joined
[2025-11-24 13:41:32] 2025-11-24 18:41:00,709 | INFO     | all job control threads have been joined
[2025-11-24 13:41:32] 2025-11-24 18:41:01,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:41:32] 2025-11-24 18:41:01,172 | INFO     | aborting loop
[2025-11-24 13:41:32] 2025-11-24 18:41:01,563 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:01,590 | INFO     | [payload] control thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:01,684 | INFO     | [data] control thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:01,716 | INFO     | [job] control thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:01,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:41:32] 2025-11-24 18:41:01,878 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:01,905 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,102 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,178 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,373 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,614 | INFO     | [job] validate thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,846 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,878 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,879 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:02,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:41:32] 2025-11-24 18:41:03,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:41:32] 2025-11-24 18:41:03,819 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:04,124 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:06,911 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:41:32] 2025-11-24 18:41:19,233 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:41:32] 2025-11-24 18:41:19,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139975526786880)>', '<ExcThread(monitor, started 139975030978304)>']
[2025-11-24 13:41:32] 2025-11-24 18:41:24,319 | INFO     | all workflow threads have been joined
[2025-11-24 13:41:32] 2025-11-24 18:41:24,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:41:32] 2025-11-24 18:41:24,319 | INFO     | traces error code: 0
[2025-11-24 13:41:32] 2025-11-24 18:41:24,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:41:32] 2025-11-24 18:41:32,134 | INFO     | PID=514875 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 13:41:32] 2025-11-24 18:41:32,134 | INFO     | .. there are 41 such processes running
[2025-11-24 13:41:32] 2025-11-24 18:41:32,135 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:41:32] 2025-11-24 18:41:32,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:41:32] 2025-11-24 18:41:32,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:41:32] 2025-11-24 18:41:32,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:41:32] 2025-11-24 18:41:32,135 | INFO     | [monitor] control thread has ended
[2025-11-24 13:41:32] 2025-11-24 18:41:32,322 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:41:32] 2025-11-24 18:41:32,326 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:41:32] 2025-11-24 18:41:32,329 [wrapper] pilotpid: 514875
[2025-11-24 13:41:32] 2025-11-24 18:41:32,331 [wrapper] Pilot exit status: 0
[2025-11-24 13:41:32] 2025-11-24 18:41:32,370 [wrapper] pandaids: 6894289263
[2025-11-24 13:41:32] 2025-11-24 18:41:32,477 [wrapper] cleanup supervisor_pilot 3521740 514876
[2025-11-24 13:41:32] 2025-11-24 18:41:32,481 [wrapper] Test setup, not cleaning
[2025-11-24 13:41:32] 2025-11-24 18:41:32,485 [wrapper] apfmon messages muted
[2025-11-24 13:41:32] 2025-11-24 18:41:32,487 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:41:32] 2025-11-24 18:41:32,490 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:41:32]  *** Error codes and diagnostics ***
[2025-11-24 13:41:32]     "exeErrorCode": 0,
[2025-11-24 13:41:32]     "exeErrorDiag": "",
[2025-11-24 13:41:32]     "pilotErrorCode": 0,
[2025-11-24 13:41:32]     "pilotErrorDiag": "",
[2025-11-24 13:41:32]  *** Listing of results directory ***
[2025-11-24 13:41:32] total 1336100
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 05:50 pilot3.tar.gz
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:19 queuedata.json
[2025-11-24 13:41:32] -rwx------. 1 boincer umatlas     36292 Nov 21 06:20 runpilot2-wrapper.sh
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:41:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:01 run_atlas
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:01 job.xml
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas 409895025 Nov 23 00:01 EVNT.47493127._002401.pool.root.1
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 13:41:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:01 shared
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:01 input.tar.gz
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:01 boinc_lockfile
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:01 pandaJob.out
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas        57 Nov 23 00:01 setup.sh.local
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-24 13:41:32] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas       534 Nov 24 13:18 boinc_task_state.xml
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas      6662 Nov 24 13:37 init_data.xml
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas 912345968 Nov 24 13:39 HITS.47533967._003730.pool.root.1
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas      1068 Nov 24 13:40 memory_monitor_summary.json
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas   3212454 Nov 24 13:40 log.47533967._003730.job.log.tgz.1
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas      8649 Nov 24 13:40 heartbeat.json
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas        30 Nov 24 13:41 wrapper_checkpoint.txt
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:41 boinc_mmap_file
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas        95 Nov 24 13:41 pilot_heartbeat.json
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas       822 Nov 24 13:41 pilotlog.txt
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas  17789643 Nov 24 13:41 log.47533967._003730.job.log.1
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas       353 Nov 24 13:41 output.list
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:41 runtime_log
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas  21022720 Nov 24 13:41 result.tar.gz
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas      9334 Nov 24 13:41 runtime_log.err
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas       665 Nov 24 13:41 CCLKDmqMeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4KJKDmGsNwBn.diag
[2025-11-24 13:41:32] -rw-r--r--. 1 boincer umatlas     21889 Nov 24 13:41 stderr.txt
[2025-11-24 13:41:32] HITS file was successfully produced:
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas 912345968 Nov 24 13:39 shared/HITS.pool.root.1
[2025-11-24 13:41:32]  *** Contents of shared directory: ***
[2025-11-24 13:41:32] total 1312392
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas 409895025 Nov 23 00:01 ATLAS.root_0
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:01 start_atlas.sh
[2025-11-24 13:41:32] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:01 input.tar.gz
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas 912345968 Nov 24 13:39 HITS.pool.root.1
[2025-11-24 13:41:32] -rw-------. 1 boincer umatlas  21022720 Nov 24 13:41 result.tar.gz
13:41:33 (507169): run_atlas exited; CPU time 307012.217209
13:41:33 (507169): called boinc_finish(0)

</stderr_txt>
]]>

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