Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:34:23 (22858): wrapper (7.7.26015): starting
00:34:23 (22858): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:34:23] Arguments: --nthreads 8
[2025-11-25 00:34:23] Threads: 8
[2025-11-25 00:34:23] Checking for CVMFS
[2025-11-25 00:34:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:34:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:34:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:34:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:34:26] 2.11.2.0 26867 282994 138192 153263 0 84 19284992 25165825 1027 130560 10 135148754 99.875 77566418 2852 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 00:34:26] CVMFS is ok
[2025-11-25 00:34:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:34:26] Checking for apptainer binary...
[2025-11-25 00:34:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:34:26] Running /usr/bin/apptainer --version
[2025-11-25 00:34:26] apptainer version 1.3.2-1.el7
[2025-11-25 00:34:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:34:41] cg-vwn435.simple-grid.lan
[2025-11-25 00:34:41] apptainer works
[2025-11-25 00:34:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:34:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:34:41] Starting ATLAS job with PandaID=6894289137
[2025-11-25 00:34:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:02:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:02:06] 2025-11-26 01:01:23,959 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:02:06] 2025-11-26 01:01:24,650 | INFO     | time since job start (91329s) is within the limit (172800.0s)
[2025-11-26 02:02:06] 2025-11-26 01:01:25,473 | INFO     | monitor loop #6112: job 0:6894289137 is in state 'finished'
[2025-11-26 02:02:06] 2025-11-26 01:01:25,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:02:06] 2025-11-26 01:01:25,799 | INFO     | PID=26584 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 02:02:06] 2025-11-26 01:01:25,799 | INFO     | .. there are 9 such processes running
[2025-11-26 02:02:06] 2025-11-26 01:01:26,800 | INFO     | time since job start (91331s) is within the limit (172800.0s)
[2025-11-26 02:02:06] 2025-11-26 01:01:27,982 | INFO     | monitor loop #6113: job 0:6894289137 is in state 'finished'
[2025-11-26 02:02:06] 2025-11-26 01:01:27,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:02:06] 2025-11-26 01:01:28,807 | INFO     | time since job start (91333s) is within the limit (172800.0s)
[2025-11-26 02:02:06] 2025-11-26 01:01:30,487 | INFO     | monitor loop #6114: job 0:6894289137 is in state 'finished'
[2025-11-26 02:02:06] 2025-11-26 01:01:30,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:02:06] 2025-11-26 01:01:30,814 | INFO     | time since job start (91335s) is within the limit (172800.0s)
[2025-11-26 02:02:06] 2025-11-26 01:01:32,821 | INFO     | time since job start (91337s) is within the limit (172800.0s)
[2025-11-26 02:02:06] 2025-11-26 01:01:32,992 | INFO     | monitor loop #6115: job 0:6894289137 is in state 'finished'
[2025-11-26 02:02:06] 2025-11-26 01:01:32,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:02:06] 2025-11-26 01:01:33,816 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:02:06] 2025-11-26 01:01:33,817 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 02:02:06] 2025-11-26 01:01:33,819 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6894289137/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:02:06] 2025-11-26 01:01:33,820 | INFO     | extracted standard info from prmon json
[2025-11-26 02:02:06] 2025-11-26 01:01:33,820 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:02:06] 2025-11-26 01:01:33,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:02:06] 2025-11-26 01:01:33,848 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:02:06] 2025-11-26 01:01:33,851 | INFO     | sum of square deviations: 1023677901089.2642
[2025-11-26 02:02:06] 2025-11-26 01:01:33,917 | INFO     | sum of deviations: 3607123227453.653
[2025-11-26 02:02:06] 2025-11-26 01:01:33,928 | INFO     | mean x: 1764073488.2847548
[2025-11-26 02:02:06] 2025-11-26 01:01:33,928 | INFO     | mean y: 2831176.2531900606
[2025-11-26 02:02:06] 2025-11-26 01:01:33,928 | INFO     | intersect: -6213216320.480119
[2025-11-26 02:02:06] 2025-11-26 01:01:33,930 | INFO     | chi2: 31.071013117331738
[2025-11-26 02:02:06] 2025-11-26 01:01:33,932 | INFO     | sum of square deviations: 1013400691840.9829
[2025-11-26 02:02:06] 2025-11-26 01:01:34,028 | INFO     | sum of deviations: 4100217323714.381
[2025-11-26 02:02:06] 2025-11-26 01:01:34,029 | INFO     | mean x: 1764073335.7890835
[2025-11-26 02:02:06] 2025-11-26 01:01:34,029 | INFO     | mean y: 2838491.6529649594
[2025-11-26 02:02:06] 2025-11-26 01:01:34,029 | INFO     | intersect: -7134598960.2251425
[2025-11-26 02:02:06] 2025-11-26 01:01:34,031 | INFO     | chi2: 27.78844818106816
[2025-11-26 02:02:06] 2025-11-26 01:01:34,031 | INFO     | current chi2=27.78844818106816 (change=10.56471806653942 %)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,031 | INFO     | right removable region: 1483
[2025-11-26 02:02:06] 2025-11-26 01:01:34,033 | INFO     | sum of square deviations: 1013399524910.9822
[2025-11-26 02:02:06] 2025-11-26 01:01:34,108 | INFO     | sum of deviations: 2978126064291.633
[2025-11-26 02:02:06] 2025-11-26 01:01:34,108 | INFO     | mean x: 1764073640.7890835
[2025-11-26 02:02:06] 2025-11-26 01:01:34,108 | INFO     | mean y: 2840508.545148248
[2025-11-26 02:02:06] 2025-11-26 01:01:34,108 | INFO     | intersect: -5181327788.183912
[2025-11-26 02:02:06] 2025-11-26 01:01:34,110 | INFO     | chi2: 26.195924191512898
[2025-11-26 02:02:06] 2025-11-26 01:01:34,110 | INFO     | current chi2=26.195924191512898 (change=15.69015116246552 %)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,110 | INFO     | left removable region: 10
[2025-11-26 02:02:06] 2025-11-26 01:01:34,112 | INFO     | sum of square deviations: 991031136602.5685
[2025-11-26 02:02:06] 2025-11-26 01:01:34,184 | INFO     | sum of deviations: 3011012574216.5347
[2025-11-26 02:02:06] 2025-11-26 01:01:34,185 | INFO     | mean x: 1764073610.29871
[2025-11-26 02:02:06] 2025-11-26 01:01:34,185 | INFO     | mean y: 2857983.912423625
[2025-11-26 02:02:06] 2025-11-26 01:01:34,185 | INFO     | intersect: -5356860420.760765
[2025-11-26 02:02:06] 2025-11-26 01:01:34,187 | INFO     | chi2: 18.28764208193476
[2025-11-26 02:02:06] 2025-11-26 01:01:34,187 | INFO     | current memory leak: 3.04 B/s (using 1473 data points, chi2=18.29)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,190 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,190 | INFO     | ..............................
[2025-11-26 02:02:06] 2025-11-26 01:01:34,190 | INFO     | . Timing measurements:
[2025-11-26 02:02:06] 2025-11-26 01:01:34,190 | INFO     | . get job = 0 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . initial setup = 11 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . payload setup = 175 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . stage-in = 0 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . payload execution = 90923 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . stage-out = 4 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | . log creation = 1 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,191 | INFO     | ..............................
[2025-11-26 02:02:06] 2025-11-26 01:01:34,640 | INFO     | 
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | job summary report
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | --------------------------------------------------
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | PanDA job id: 6894289137
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | task id: 47533967
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | errors: (none)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | pilot state: finished 
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | transexitcode: 0
[2025-11-26 02:02:06] 2025-11-26 01:01:34,641 | INFO     | exeerrorcode: 0
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | exeerrordiag: 
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | exitcode: 0
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | exitmsg: OK
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | cpuconsumptiontime: 346164 s
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | nevents: 1000
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | neventsw: 0
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | pid: 665
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | pgrp: 665
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | corecount: 8
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | event service: False
[2025-11-26 02:02:06] 2025-11-26 01:01:34,642 | INFO     | sizes: {0: 2283482, 1: 2284338, 2: 2284366, 13: 2284366, 24: 2284422, 34: 2284450, 45: 2284606, 56: 2284634, 67: 2284662, 77: 2284690, 88: 2284746, 99: 2285054, 10
[2025-11-26 02:02:06] 2025-11-26 01:01:34,643 | INFO     | --------------------------------------------------
[2025-11-26 02:02:06] 2025-11-26 01:01:34,643 | INFO     | 
[2025-11-26 02:02:06] 2025-11-26 01:01:34,643 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-26 02:02:06] 2025-11-26 01:01:34,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,858 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:02:06] 2025-11-26 01:01:34,859 | INFO     | job 6894289137 has completed (purged errors)
[2025-11-26 02:02:06] 2025-11-26 01:01:34,859 | INFO     | overall cleanup function is called
[2025-11-26 02:02:06] 2025-11-26 01:01:35,876 | INFO     | --- collectZombieJob: --- 10, [665]
[2025-11-26 02:02:06] 2025-11-26 01:01:35,877 | INFO     | zombie collector waiting for pid 665
[2025-11-26 02:02:06] 2025-11-26 01:01:35,877 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:02:06] 2025-11-26 01:01:35,877 | INFO     | collected zombie processes
[2025-11-26 02:02:06] 2025-11-26 01:01:35,877 | INFO     | will attempt to kill all subprocesses of pid=665
[2025-11-26 02:02:06] 2025-11-26 01:01:35,982 | INFO     | process IDs to be killed: [665] (in reverse order)
[2025-11-26 02:02:06] 2025-11-26 01:01:36,042 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:02:06] 2025-11-26 01:01:36,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:02:06] 2025-11-26 01:01:36,046 | INFO     | did not find any defunct processes belonging to 665
[2025-11-26 02:02:06] 2025-11-26 01:01:36,049 | INFO     | did not find any defunct processes belonging to 665
[2025-11-26 02:02:06] 2025-11-26 01:01:36,052 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:02:06] 2025-11-26 01:01:36,052 | INFO     | ready for new job
[2025-11-26 02:02:06] 2025-11-26 01:01:36,052 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:02:06] 2025-11-26 01:01:36,059 | INFO     | ***************************************
[2025-11-26 02:02:06] 2025-11-26 01:01:36,060 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:02:06] 2025-11-26 01:01:36,060 | INFO     | ***************************************
[2025-11-26 02:02:06] 2025-11-26 01:01:36,060 | INFO     | 
[2025-11-26 02:02:06] 2025-11-26 01:01:36,060 | INFO     | pilot is running in a VM
[2025-11-26 02:02:06] 2025-11-26 01:01:36,061 | INFO     | architecture information:
[2025-11-26 02:02:06] 2025-11-26 01:01:36,061 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:02:06] 2025-11-26 01:01:36,085 | INFO     | cat /etc/os-release:
[2025-11-26 02:02:06] NAME="CentOS Linux"
[2025-11-26 02:02:06] VERSION="7 (Core)"
[2025-11-26 02:02:06] ID="centos"
[2025-11-26 02:02:06] ID_LIKE="rhel fedora"
[2025-11-26 02:02:06] VERSION_ID="7"
[2025-11-26 02:02:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:02:06] ANSI_COLOR="0;31"
[2025-11-26 02:02:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:02:06] HOME_URL="https://www.centos.org/"
[2025-11-26 02:02:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:02:06] 
[2025-11-26 02:02:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:02:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:02:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:02:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:02:06] 
[2025-11-26 02:02:06] 2025-11-26 01:01:36,086 | INFO     | ***************************************
[2025-11-26 02:02:06] 2025-11-26 01:01:36,589 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-26 02:02:06] 2025-11-26 01:01:36,608 | INFO     | sufficient remaining disk space (494700331008 B)
[2025-11-26 02:02:06] 2025-11-26 01:01:36,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:02:06] 2025-11-26 01:01:36,609 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:02:06] 2025-11-26 01:01:36,609 | INFO     | update_server=False
[2025-11-26 02:02:06] 2025-11-26 01:01:36,609 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:02:06] 2025-11-26 01:01:36,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:02:06] 2025-11-26 01:01:36,610 | INFO     | aborting loop
[2025-11-26 02:02:06] 2025-11-26 01:01:36,949 | INFO     | all payload control threads have been joined
[2025-11-26 02:02:06] 2025-11-26 01:01:36,972 | INFO     | all job control threads have been joined
[2025-11-26 02:02:06] 2025-11-26 01:01:37,447 | INFO     | all data control threads have been joined
[2025-11-26 02:02:06] 2025-11-26 01:01:37,614 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:37,615 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:37,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:02:06] 2025-11-26 01:01:37,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:37,714 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:37,955 | INFO     | [payload] control thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:37,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:02:06] 2025-11-26 01:01:37,978 | INFO     | [job] control thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:38,371 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:38,453 | INFO     | [data] control thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:38,501 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:38,663 | INFO     | [job] validate thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:38,745 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:39,026 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:39,027 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:39,328 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:02:06] 2025-11-26 01:01:39,980 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:40,334 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:41,640 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:02:06] 2025-11-26 01:01:54,072 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:02:06] 2025-11-26 01:01:54,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965803321152)>', '<ExcThread(monitor, started 139964998219520)>']
[2025-11-26 02:02:06] 2025-11-26 01:01:59,980 | INFO     | all workflow threads have been joined
[2025-11-26 02:02:06] 2025-11-26 01:01:59,981 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:02:06] 2025-11-26 01:01:59,981 | INFO     | traces error code: 0
[2025-11-26 02:02:06] 2025-11-26 01:01:59,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:02:06] 2025-11-26 01:02:06,110 | INFO     | PID=26584 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 02:02:06] 2025-11-26 01:02:06,111 | INFO     | .. there are 9 such processes running
[2025-11-26 02:02:06] 2025-11-26 01:02:06,112 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:02:06] 2025-11-26 01:02:06,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:02:06] 2025-11-26 01:02:06,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:02:06] 2025-11-26 01:02:06,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:02:06] 2025-11-26 01:02:06,112 | INFO     | [monitor] control thread has ended
[2025-11-26 02:02:06] 2025-11-26 01:02:06,331 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:02:06] 2025-11-26 01:02:06,338 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:02:06] 2025-11-26 01:02:06,383 [wrapper] pilotpid: 26584
[2025-11-26 02:02:06] 2025-11-26 01:02:06,422 [wrapper] Pilot exit status: 0
[2025-11-26 02:02:06] 2025-11-26 01:02:06,447 [wrapper] pandaids: 6894289137
[2025-11-26 02:02:06] 2025-11-26 01:02:06,489 [wrapper] cleanup supervisor_pilot  2457 26585
[2025-11-26 02:02:06] 2025-11-26 01:02:06,500 [wrapper] Test setup, not cleaning
[2025-11-26 02:02:06] 2025-11-26 01:02:06,505 [wrapper] apfmon messages muted
[2025-11-26 02:02:06] 2025-11-26 01:02:06,508 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:02:06] 2025-11-26 01:02:06,510 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:02:06]  *** Error codes and diagnostics ***
[2025-11-26 02:02:06]     "exeErrorCode": 0,
[2025-11-26 02:02:06]     "exeErrorDiag": "",
[2025-11-26 02:02:06]     "pilotErrorCode": 0,
[2025-11-26 02:02:06]     "pilotErrorDiag": "",
[2025-11-26 02:02:06]  *** Listing of results directory ***
[2025-11-26 02:02:06] total 1347340
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc    576529 Nov 21 11:50 pilot3.tar.gz
[2025-11-26 02:02:06] -rwx------. 1 boinc boinc     36292 Nov 21 12:17 runpilot2-wrapper.sh
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:17 queuedata.json
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc       100 Nov 25 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:02:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 00:34 run_atlas
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc       105 Nov 25 00:34 job.xml
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc 410251084 Nov 25 00:34 EVNT.47493127._002399.pool.root.1
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc      6391 Nov 25 00:34 init_data.xml
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:34 start_atlas.sh
[2025-11-26 02:02:06] drwxrwx--x. 2 boinc boinc        68 Nov 25 00:34 shared
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc    590102 Nov 25 00:34 input.tar.gz
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc         0 Nov 25 00:34 boinc_lockfile
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc      2786 Nov 25 00:34 pandaJob.out
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc    991801 Nov 25 00:39 agis_schedconf.cvmfs.json
[2025-11-26 02:02:06] drwx------. 5 boinc boinc      4096 Nov 25 00:39 pilot3
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc       533 Nov 26 01:33 boinc_task_state.xml
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc 935972554 Nov 26 02:00 HITS.47533967._003709.pool.root.1
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc      1033 Nov 26 02:01 memory_monitor_summary.json
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc   1516240 Nov 26 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc   2574917 Nov 26 02:01 log.47533967._003709.job.log.tgz.1
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc      8626 Nov 26 02:01 heartbeat.json
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc      8192 Nov 26 02:01 boinc_mmap_file
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc        29 Nov 26 02:01 wrapper_checkpoint.txt
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc        95 Nov 26 02:02 pilot_heartbeat.json
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc       820 Nov 26 02:02 pilotlog.txt
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc  12197997 Nov 26 02:02 log.47533967._003709.job.log.1
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc       353 Nov 26 02:02 output.list
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc       620 Nov 26 02:02 runtime_log
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc  14796800 Nov 26 02:02 result.tar.gz
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc       662 Nov 26 02:02 vMgKDmsJeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhYHKDmovJMIo.diag
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc      8817 Nov 26 02:02 runtime_log.err
[2025-11-26 02:02:06] -rw-r--r--. 1 boinc boinc     21591 Nov 26 02:02 stderr.txt
[2025-11-26 02:02:06] HITS file was successfully produced:
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc 935972554 Nov 26 02:00 shared/HITS.pool.root.1
[2025-11-26 02:02:06]  *** Contents of shared directory: ***
[2025-11-26 02:02:06] total 1329720
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc 410251084 Nov 25 00:34 ATLAS.root_0
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc     15847 Nov 25 00:34 start_atlas.sh
[2025-11-26 02:02:06] -rw-r--r--. 2 boinc boinc    590102 Nov 25 00:34 input.tar.gz
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc 935972554 Nov 26 02:00 HITS.pool.root.1
[2025-11-26 02:02:06] -rw-------. 1 boinc boinc  14796800 Nov 26 02:02 result.tar.gz
02:02:07 (22858): run_atlas exited; CPU time 346584.127644
02:02:07 (22858): called boinc_finish(0)

</stderr_txt>
]]>

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