Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:19:01 (400682): wrapper (7.7.26015): starting
06:19:01 (400682): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 06:19:01] Arguments: --nthreads 3
[2025-11-22 06:19:01] Threads: 3
[2025-11-22 06:19:01] Checking for CVMFS
[2025-11-22 06:19:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:19:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:19:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:19:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:19:02] 2.9.2.0 3971706 355 68300 153161 2 16 34619963 36864001 0 130560 0 1847208 99.998 17220 8839 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 06:19:02] CVMFS is ok
[2025-11-22 06:19:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:19:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 06:19:02] Further information can be found at the LHC@home message board.
[2025-11-22 06:19:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:19:02] Checking for apptainer binary...
[2025-11-22 06:19:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:19:02] Running /usr/bin/apptainer --version
[2025-11-22 06:19:02] apptainer version 1.4.1-1.1
[2025-11-22 06:19:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:19:02] thA335
[2025-11-22 06:19:02] apptainer works
[2025-11-22 06:19:02] Set ATHENA_PROC_NUMBER=3
[2025-11-22 06:19:02] Set ATHENA_CORE_NUMBER=3
[2025-11-22 06:19:02] Starting ATLAS job with PandaID=6894289104
[2025-11-22 06:19:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 06:23:21]  *** The last 200 lines of the pilot log: ***
[2025-11-22 06:23:21] 2025-11-22 05:22:33,414 | INFO     | update_server=False
[2025-11-22 06:23:21] 2025-11-22 05:22:33,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 06:23:21] 2025-11-22 05:22:33,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:23:21] 2025-11-22 05:22:33,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:23:21] 2025-11-22 05:22:33,714 | INFO     | aborting loop
[2025-11-22 06:23:21] 2025-11-22 05:22:34,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 06:23:21] 2025-11-22 05:22:34,296 | INFO     | all job control threads have been joined
[2025-11-22 06:23:21] 2025-11-22 05:22:34,399 | INFO     | all data control threads have been joined
[2025-11-22 06:23:21] 2025-11-22 05:22:34,420 | INFO     | [job] queue monitor thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,421 | INFO     | [job] retrieve thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,658 | INFO     | [payload] failed_post thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,711 | INFO     | [data] copytool_in thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,720 | INFO     | [job] job monitor thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:34,857 | INFO     | all payload control threads have been joined
[2025-11-22 06:23:21] 2025-11-22 05:22:35,297 | INFO     | [job] control thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,405 | INFO     | [data] control thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,587 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,626 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,728 | INFO     | [payload] validate_post thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,788 | INFO     | [job] validate thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,863 | INFO     | [payload] control thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:35,874 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:36,182 | INFO     | [data] copytool_out thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:22:36,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 06:23:21] 2025-11-22 05:22:40,472 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 06:23:21] 2025-11-22 05:23:03,414 | INFO     | PID=404414 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 06:23:21] 2025-11-22 05:23:03,414 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 06:23:21] 2025-11-22 05:23:03,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 06:23:21] 2025-11-22 05:23:03,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 06:23:21] 2025-11-22 05:23:14,407 | INFO     | [monitor] cgroup control has ended
[2025-11-22 06:23:21] 2025-11-22 05:23:16,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981687482176)>', '<ExcThread(monitor, started 139980961736448)>']
[2025-11-22 06:23:21] 2025-11-22 05:23:16,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 06:23:21] 2025-11-22 05:23:16,484 | INFO     | [monitor] control thread has ended
[2025-11-22 06:23:21] 2025-11-22 05:23:21,345 | INFO     | all workflow threads have been joined
[2025-11-22 06:23:21] 2025-11-22 05:23:21,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 06:23:21] 2025-11-22 05:23:21,346 | INFO     | traces error code: 0
[2025-11-22 06:23:21] 2025-11-22 05:23:21,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 06:23:21] 2025-11-22 05:23:21,391 [wrapper] ==== pilot stdout END ====
[2025-11-22 06:23:21] 2025-11-22 05:23:21,395 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 06:23:21] 2025-11-22 05:23:21,398 [wrapper] pilotpid: 404414
[2025-11-22 06:23:21] 2025-11-22 05:23:21,400 [wrapper] Pilot exit status: 0
[2025-11-22 06:23:21] 2025-11-22 05:23:21,407 [wrapper] pandaids: 6894289104
[2025-11-22 06:23:21] 2025-11-22 05:23:21,424 [wrapper] cleanup supervisor_pilot  404420 404415
[2025-11-22 06:23:21] 2025-11-22 05:23:21,427 [wrapper] Test setup, not cleaning
[2025-11-22 06:23:21] 2025-11-22 05:23:21,430 [wrapper] apfmon messages muted
[2025-11-22 06:23:21] 2025-11-22 05:23:21,432 [wrapper] ==== wrapper stdout END ====
[2025-11-22 06:23:21] 2025-11-22 05:23:21,435 [wrapper] ==== wrapper stderr END ====
[2025-11-22 06:23:21]  *** Error codes and diagnostics ***
[2025-11-22 06:23:21]     "exeErrorCode": 65,
[2025-11-22 06:23:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 06:23:21]     "pilotErrorCode": 1305,
[2025-11-22 06:23:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 06:23:21]  *** Listing of results directory ***
[2025-11-22 06:23:21] total 404320
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc    576529 Nov 21 11:50 pilot3.tar.gz
[2025-11-22 06:23:21] -rwx------ 1 boinc boinc     36292 Nov 21 12:15 runpilot2-wrapper.sh
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:15 queuedata.json
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc       100 Nov 22 06:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 06:23:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 06:19 run_atlas
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc       105 Nov 22 06:19 job.xml
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc 409818461 Nov 22 06:19 EVNT.47493127._002396.pool.root.1
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc    590103 Nov 22 06:19 input.tar.gz
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc     15847 Nov 22 06:19 start_atlas.sh
[2025-11-22 06:23:21] drwxrwx--x 2 boinc boinc      4096 Nov 22 06:19 shared
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 22 06:19 boinc_setup_complete
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      6194 Nov 22 06:19 init_data.xml
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 22 06:19 boinc_lockfile
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      2786 Nov 22 06:19 pandaJob.out
[2025-11-22 06:23:21] -rw------- 1 boinc boinc    989752 Nov 22 06:19 agis_schedconf.cvmfs.json
[2025-11-22 06:23:21] -rw------- 1 boinc boinc   1526164 Nov 22 06:19 agis_ddmendpoints.agis.ALL.json
[2025-11-22 06:23:21] drwx------ 5 boinc boinc      4096 Nov 22 06:19 pilot3
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc       523 Nov 22 06:20 boinc_task_state.xml
[2025-11-22 06:23:21] -rw------- 1 boinc boinc       945 Nov 22 06:20 memory_monitor_summary.json
[2025-11-22 06:23:21] -rw------- 1 boinc boinc     55996 Nov 22 06:20 log.47533967._003676.job.log.tgz.1
[2025-11-22 06:23:21] -rw------- 1 boinc boinc        95 Nov 22 06:22 pilot_heartbeat.json
[2025-11-22 06:23:21] -rw------- 1 boinc boinc      8412 Nov 22 06:22 heartbeat.json
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc        23 Nov 22 06:23 wrapper_checkpoint.txt
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      8192 Nov 22 06:23 boinc_mmap_file
[2025-11-22 06:23:21] -rw------- 1 boinc boinc      4751 Nov 22 06:23 pilotlog.txt
[2025-11-22 06:23:21] -rw------- 1 boinc boinc     93814 Nov 22 06:23 log.47533967._003676.job.log.1
[2025-11-22 06:23:21] -rw------- 1 boinc boinc       186 Nov 22 06:23 output.list
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc       620 Nov 22 06:23 runtime_log
[2025-11-22 06:23:21] -rw------- 1 boinc boinc    174080 Nov 22 06:23 result.tar.gz
[2025-11-22 06:23:21] -rw------- 1 boinc boinc       649 Nov 22 06:23 w0uKDmtHeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkKJKDmRDBsPm.diag
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      8744 Nov 22 06:23 runtime_log.err
[2025-11-22 06:23:21] -rw-r--r-- 1 boinc boinc      7785 Nov 22 06:23 stderr.txt
[2025-11-22 06:23:21] No HITS result produced
[2025-11-22 06:23:21]  *** Contents of shared directory: ***
[2025-11-22 06:23:21] total 400988
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc 409818461 Nov 22 06:19 ATLAS.root_0
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc    590103 Nov 22 06:19 input.tar.gz
[2025-11-22 06:23:21] -rw-r--r-- 2 boinc boinc     15847 Nov 22 06:19 start_atlas.sh
[2025-11-22 06:23:21] -rw------- 1 boinc boinc    174080 Nov 22 06:23 result.tar.gz
06:23:23 (400682): run_atlas exited; CPU time 32.007478
06:23:23 (400682): called boinc_finish(0)

</stderr_txt>
]]>

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